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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFN168
Library AF
(Link to library)
Clone ID AFN168
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFN168P
(Link to Original site)
Representative DNA sequence 
>AFN168 (AFN168Q) /CSM/AF/AFN1-C/AFN168Q.Seq.d/
AAAAAAAAATATTCAATACATACATATATATACATATATATATATATATAAAATAATATA
AAATAAGCATTTATAATTTTAATATTTATTTTATTAAAAAAAAAAXXXXXXXXXXCTNTN
AAAANAATAGTTTTTNAAAATTNAATGTTNTTNAAAAAANCAATNTTTAAAAATNATNCA
AAATCAAGTGNNAAAGNGTNAATAATNATTTNNNAAGGNAATAGTNTTTTAAATAATNAA
AGTAATAATNTTTAAANAANAAACCCTTTTGGAAANANAANATTTTTTAATTNAAAAATN
ATNATNATNATNATAATNATNATNATTATNATAATAATNATAATAATAATAATAATAATA
ATAACNTTNATAATNATAGTTATNATNATATAAC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
kkifntyiyihiyiyik*YKISIYNFNIYFIKKK---

---XKXIVFXNXMXXKKXXFKNXXKSSXKXXIXIXXGNSXLNNXSNNX*xxnpfgxxxff
nxkxxxxxixxxixiixiiiiiiiitxixivxxi*
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkysihtyiyiyiyi*nnik*afiilifillkkk---

---lxkx*fxkixcxxkxqxlkxxqnqvxkxx*xfxkxivf*ixkvixfkxxtllexxxf
lixkxxxxx*xxxlx**x********xx*x*lxxyn

Frame B:
kkniqyihiytyiyiykii*nkhl*f*ylfy*kk---

---xxxnsfxkxnvxxkxnx*kxxkikxxxvnnxxxrx*xfk*xk**xlxxkpfwkxxif
*xknxxxxxnxxxyxnnxnnnnnnnnxxnxsyxxi

Frame C:
kkifntyiyihiyiyik*YKISIYNFNIYFIKKK---

---XKXIVFXNXMXXKKXXFKNXXKSSXKXXIXIXXGNSXLNNXSNNX*xxnpfgxxxff
nxkxxxxxixxxixiixiiiiiiiitxixivxxi*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN168 (AFN168Q) /CSM/AF/AFN1-C/AFN168Q.Seq.d/                        167   2e-40
SSB827 (SSB827Q) /CSM/SS/SSB8-B/SSB827Q.Seq.d/                         32   6.0
SLI442 (SLI442Q) /CSM/SL/SLI4-B/SLI442Q.Seq.d/                         32   6.0
SLF212 (SLF212Q) /CSM/SL/SLF2-A/SLF212Q.Seq.d/                         32   6.0
SFG757 (SFG757Q) /CSM/SF/SFG7-C/SFG757Q.Seq.d/                         32   6.0
CHF678 (CHF678Q) /CSM/CH/CHF6-D/CHF678Q.Seq.d/                         32   6.0
AHM392 (AHM392Q) /CSM/AH/AHM3-D/AHM392Q.Seq.d/                         32   6.0
AHL845 (AHL845Q) /CSM/AH/AHL8-B/AHL845Q.Seq.d/                         32   6.0
AHI586 (AHI586Q) /CSM/AH/AHI5-D/AHI586Q.Seq.d/                         32   6.0
AHE677 (AHE677Q) /CSM/AH/AHE6-D/AHE677Q.Seq.d/                         32   6.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347600) Dictyostelium discoideum cDNA clone:dda27g17, 3' ...   115   1e-21  1
dna update 2009. 4.15
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 99,397,682
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFN168 is

5' end seq. ID AFN168F
5' end seq. 
>AFN168F.Seq
AAAAAAAAATATTCAATACATACATATATATACATATATATATATATATAAAATAATATA
AAATAAGCATTTATAATTTTAATATTTATTTTATTAAAAAAAAAAXXXXXXXXXX
Length of 5' end seq. 115
3' end seq. ID AFN168Z
3' end seq. 
>AFN168Z.Seq
XXXXXXXXXXCTNTNAAAANAATAGTTTTTNAAAATTNAATGTTNTTNAAAAAANCAATN
TTTAAAAATNATNCAAAATCAAGTGNNAAAGNGTNAATAATNATTTNNNAAGGNAATAGT
NTTTTAAATAATNAAAGTAATAATNTTTAAANAANAAACCCTTTTGGAAANANAANATTT
TTTAATTNAAAAATNATNATNATNATNATAATNATNATNATTATNATAATAATNATAATA
ATAATAATAATAATAATAACNTTNATAATNATAGTTATNATNATATAAC
Length of 3' end seq. 289
Connected seq. ID AFN168P
Connected seq. 
>AFN168P.Seq
AAAAAAAAATATTCAATACATACATATATATACATATATATATATATATAAAATAATATA
AAATAAGCATTTATAATTTTAATATTTATTTTATTAAAAAAAAAA----------CTNTN
AAAANAATAGTTTTTNAAAATTNAATGTTNTTNAAAAAANCAATNTTTAAAAATNATNCA
AAATCAAGTGNNAAAGNGTNAATAATNATTTNNNAAGGNAATAGTNTTTTAAATAATNAA
AGTAATAATNTTTAAANAANAAACCCTTTTGGAAANANAANATTTTTTAATTNAAAAATN
ATNATNATNATNATAATNATNATNATTATNATAATAATNATAATAATAATAATAATAATA
ATAACNTTNATAATNATAGTTATNATNATATAAC
Length of connected seq. 384
Full length Seq ID -
Full length Seq. -
Length of full length seq. -