VFM217
Library VF
(Link to library)
Clone ID VFM217
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13881-1
Original site URL
Representative seq. ID VFM217P
(Link to Original site)
Representative DNA sequence
>VFM217 (VFM217Q) /CSM/VF/VFM2-A/VFM217Q.Seq.d/
ATTCTTTAATATACATATAAATATAAAATAATGAATCCAGATTTCACAGTTTATGTTTCA
AATATTTCATTGAAAGCAAATACTAAAACAGTTTCAGATTTTTTNTCATTTTGTGGAAGA
ATTGTTAATTTATTTTTAAGAAANGACCCAACTGGTAGTTCACAACAAGCAATAGTAGTA
TTTGAATCAGATTCAGCTGCAAAAACAGCTTTATXXXXXXXXXXTAGAGTTTGATTTAAC
ACAACCAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACAACCACAAC
AACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAGTGTGCCAG
ATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGTGTTG
GACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATTTCATTAAAAC
TTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTTCACA
TTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATG
AAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAACAAGCTT
CCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTT
CAAGTTTTGGTACTTTTATTAAACAAGAAGTTCAACAAATTCAAACTGAAACCTCTCAAG
CAATTGATGAAAAAAATAAAGAAAAAGGTATTAACTCTTCAAATGATACTGAATTACAAC
AACAACAACAACAACAACAACAACAACCAGAACAACCAGAACAATACTCAAATATAGATT
TTTCAAAAGAACAATAAGTTTA
sequence update 2001.11.22
Translated Amino Acid sequence
il*YTYKYKIMNPDFTVYVSNISLKANTKTVSDFXSFCGRIVNLFLRXDPTGSSQQAIVV
FESDSAAKTAL---

---EFDLTQPIFSTTTI**sqw*tttttttic*sttrrhck*rt*car**kk*nlcccin
ycsrl*cwtrrch*stss**rtydfikt*sws*scqsksk*n***pshf*ecrch*gcsc
reskctr*kipnlrfl*eck*ydlstsfqfnessrrk*ysftnrk*sfkfwyfy*trsst
nsn*nlssn**kk*rkry*lfk*y*itttttttttttrttrtilkyrffkrtisl


Translated Amino Acid sequence (All Frames)
Frame A:
il*YTYKYKIMNPDFTVYVSNISLKANTKTVSDFXSFCGRIVNLFLRXDPTGSSQQAIVV
FESDSAAKTAL---

---*sli*hnqfsqqqqfnnlsgeqqpqqqqyvsqpqedivnrehsvpdnersktsvvas
iiaagysvgqdaaikarqvdeehmislklkvgaeavkakaneidnnlhisesaaaikgav
veranalderfqisgffksasdmisqqasnlmkaaeenstvspivnkvssfgtfikqevq
qiqtetsqaideknkekginssndtelqqqqqqqqqqpeqpeqysnidfskeq*v

Frame B:
ffnihinik**iqisqfmfqifh*kqilkqfqifxhfveelliyf*extqlvvhnkq**y
lnqiqlqkqly---

---rv*fnttnflnnnnliisvvnnnhnnnnmlvnhkktl*ienivcqimkevkplllhq
llqqvivldktlplkhvklmkni*fh*nlklelklskqkqmkliitftflrvplplrvql
*reqmhsmkdsksqvslrvqvi*slnklpi**kqpkkivqfhqs*ikfqvlvlllnkkfn
kfklkplkqlmkkikkkvltlqmilnynnnnnnnnnnqnnqnntqi*ifqknnkf

Frame C:
sliyi*i*nnesrfhslcfkyfiesky*nsfrffxilwknc*fifkkxpnw*fttsnssi
*irfscknsf---

---EFDLTQPIFSTTTI**sqw*tttttttic*sttrrhck*rt*car**kk*nlcccin
ycsrl*cwtrrch*stss**rtydfikt*sws*scqsksk*n***pshf*ecrch*gcsc
reskctr*kipnlrfl*eck*ydlstsfqfnessrrk*ysftnrk*sfkfwyfy*trsst
nsn*nlssn**kk*rkry*lfk*y*itttttttttttrttrtilkyrffkrtisl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSB202 (VSB202Q) /CSM/VS/VSB2-A/VSB202Q.Seq.d/ 1003 0.0
VFM217 (VFM217Q) /CSM/VF/VFM2-A/VFM217Q.Seq.d/ 1003 0.0
VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/ 1003 0.0
VFC715 (VFC715Q) /CSM/VF/VFC7-A/VFC715Q.Seq.d/ 1003 0.0
VFB756 (VFB756Q) /CSM/VF/VFB7-C/VFB756Q.Seq.d/ 1003 0.0
CFK424 (CFK424Q) /CSM/CF/CFK4-A/CFK424Q.Seq.d/ 1003 0.0
CFD434 (CFD434Q) /CSM/CF/CFD4-B/CFD434Q.Seq.d/ 1003 0.0
VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/ 995 0.0
CHB354 (CHB354Q) /CSM/CH/CHB3-C/CHB354Q.Seq.d/ 995 0.0
CFJ578 (CFJ578Q) /CSM/CF/CFJ5-D/CFJ578Q.Seq.d/ 995 0.0

own update 2002.12.19
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ434793) Dictyostelium discoideum cDNA clone:ddv25a06, 3' ... 952 0.0 4
(AU261887) Dictyostelium discoideum vegetative cDNA clone:VS... 952 0.0 3
(BJ430130) Dictyostelium discoideum cDNA clone:ddv6n03, 3' e... 952 0.0 3
(BJ429735) Dictyostelium discoideum cDNA clone:ddv4p13, 3' e... 952 0.0 4
(BJ376110) Dictyostelium discoideum cDNA clone:ddc21p06, 3' ... 952 0.0 5
(BJ399331) Dictyostelium discoideum cDNA clone:dds5b13, 3' e... 930 0.0 3
(BJ376016) Dictyostelium discoideum cDNA clone:ddc20k19, 3' ... 944 0.0 4
(BJ432924) Dictyostelium discoideum cDNA clone:ddv20b12, 3' ... 952 0.0 5
(BJ436351) Dictyostelium discoideum cDNA clone:ddv30l19, 3' ... 952 0.0 3
(BJ377460) Dictyostelium discoideum cDNA clone:ddc24l13, 3' ... 944 0.0 2
dna update 2009. 3.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC150647_11(AC150647|pid:none) Medicago truncatula clone mth2-65... 60 1e-07
AM458618_1(AM458618|pid:none) Vitis vinifera contig VV78X062814.... 58 4e-07
AC183492_7(AC183492|pid:none) Brassica oleracea Contig G, comple... 56 1e-06
AK061483_1(AK061483|pid:none) Oryza sativa Japonica Group cDNA c... 56 2e-06
AP008212_69(AP008212|pid:none) Oryza sativa (japonica cultivar-g... 56 2e-06
AY087960_1(AY087960|pid:none) Arabidopsis thaliana clone 39922 m... 54 6e-06
AM477014_3(AM477014|pid:none) Vitis vinifera contig VV78X023314.... 54 1e-05
BT010766_1(BT010766|pid:none) Arabidopsis thaliana At5g46870 gen... 52 2e-05
AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ... 52 2e-05
BT065499_1(BT065499|pid:none) Zea mays full-length cDNA clone ZM... 52 3e-05
protein update 2009. 6.24
PSORT

psg: 0.84 gvh: 0.52 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFM217 is nuc

5' end seq. ID VFM217F
5' end seq.
>VFM217F.Seq
ATTCTTTAATATACATATAAATATAAAATAATGAATCCAGATTTCACAGTTTATGTTTCA
AATATTTCATTGAAAGCAAATACTAAAACAGTTTCAGATTTTTTNTCATTTTGTGGAAGA
ATTGTTAATTTATTTTTAAGAAANGACCCAACTGGTAGTTCACAACAAGCAATAGTAGTA
TTTGAATCAGATTCAGCTGCAAAAACAGCTTTATNNNNNNNNNN
Length of 5' end seq. 224
3' end seq. ID VFM217Z
3' end seq.
>VFM217Z.Seq
NNNNNNNNNNTAGAGTTTGATTTAACACAACCAATTTTCTCAACAACAACAATTTAATAA
TCTCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACAT
TGTAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATC
AATTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGA
TGAAGAACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGC
AAATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGT
TGTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGC
AAGTGATATGATCTCTCAACAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTAC
AGTTTCACCAATCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTAAACAAGAAGTTCA
ACAAATTCAAACTGAAACCTCTCAAGCAATTGATGAAAAAAATAAAGAAAAAGGTATTAA
CTCTTCAAATGATACTGAATTACAACAACAACAACAACAACAACAACAACAACCAGAACA
ACCAGAACAATACTCAAATATAGATTTTTCAAAAGAACAATAAGTTTA
Length of 3' end seq. 708
Connected seq. ID VFM217P
Connected seq.
>VFM217P.Seq
ATTCTTTAATATACATATAAATATAAAATAATGAATCCAGATTTCACAGTTTATGTTTCA
AATATTTCATTGAAAGCAAATACTAAAACAGTTTCAGATTTTTTNTCATTTTGTGGAAGA
ATTGTTAATTTATTTTTAAGAAANGACCCAACTGGTAGTTCACAACAAGCAATAGTAGTA
TTTGAATCAGATTCAGCTGCAAAAACAGCTTTAT----------TAGAGTTTGATTTAAC
ACAACCAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACAACCACAAC
AACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAGTGTGCCAG
ATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGTGTTG
GACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATTTCATTAAAAC
TTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTTCACA
TTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATG
AAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAACAAGCTT
CCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTT
CAAGTTTTGGTACTTTTATTAAACAAGAAGTTCAACAAATTCAAACTGAAACCTCTCAAG
CAATTGATGAAAAAAATAAAGAAAAAGGTATTAACTCTTCAAATGATACTGAATTACAAC
AACAACAACAACAACAACAACAACAACCAGAACAACCAGAACAATACTCAAATATAGATT
TTTCAAAAGAACAATAAGTTTA
Length of connected seq. 912
Full length Seq ID -
Full length Seq. -
Length of full length seq. -