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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFM182
Library VF
(Link to library)
Clone ID VFM182
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15022-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFM182 (VFM182Q) /CSM/VF/VFM1-D/VFM182Q.Seq.d/
XXXXXXXXXXTNCTTCNAGTANNCNCTTNCNAGGTGNTCNAGGTANAGATNCCGCNANCN
CTGGTANGGGTTTACATTGACGNGATTGGAATATAGCTCGTTATTTAACAACTGAATATG
GTGTAACTACAATTCCNCCNTCNGCTTTCTATTGTGATGATCATCAAAAAATACCCGAAA
ATTTCGTACGTTTCACTTTTTGTAAAGATGATTTAACTTTGCAAAAAGCTCATGATAATT
TATTAAAATTAAAAAAATAAATCATAATAAATCATAATAAATAATAATAAATAAATAAAT
AAATAATAATAAATAATAATAAATTATAATAAAAATTTATTGNGNGGATTTATAA
sequence update 2001.11.22
Translated Amino Acid sequence 
---xssxxxxgxxgxdxaxxgxglh*RDWNIARYLTTEYGVTTIPPSAFYCDDHQKIPEN
FVRFTFCKDDLTLQKAHDNLLKLKK*iiinhnk***ink*iiinnnkl**kfixxiy
Translated Amino Acid sequence (All Frames) 
Frame A:
---xssxxxxgxxgxdxaxxgxglh*RDWNIARYLTTEYGVTTIPPSAFYCDDHQKIPEN
FVRFTFCKDDLTLQKAHDNLLKLKK*iiinhnk***ink*iiinnnkl**kfixxiy


Frame B:
---lxvxxxxvxxvxxpxxlvxvyidxigi*lvi*qlnmv*lqfxxxlsivmiikkypki
syvslfvkmi*lckklmiiy*n*knks**iiinnnk*ink***iiinynknllxgfi


Frame C:
---fxxxlxrxsrxrxrxxwxgftltxleysslfnn*iwcnynsxxxfll**sskntrkf
rtfhfl*r*fnfakss**fikikkinhnks**iiink*innnk***iiikiyxxdl*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFM182 (VFM182Q) /CSM/VF/VFM1-D/VFM182Q.Seq.d/                        331   4e-90
VSB110 (VSB110Q) /CSM/VS/VSB1-A/VSB110Q.Seq.d/                        315   2e-85
SFJ118 (SFJ118Q) /CSM/SF/SFJ1-A/SFJ118Q.Seq.d/                        315   2e-85
SFI175 (SFI175Q) /CSM/SF/SFI1-D/SFI175Q.Seq.d/                        315   2e-85
SFH819 (SFH819Q) /CSM/SF/SFH8-A/SFH819Q.Seq.d/                        315   2e-85
AFO213 (AFO213Q) /CSM/AF/AFO2-A/AFO213Q.Seq.d/                        315   2e-85
AFL113 (AFL113Q) /CSM/AF/AFL1-A/AFL113Q.Seq.d/                        315   2e-85
VFI637 (VFI637Q) /CSM/VF/VFI6-B/VFI637Q.Seq.d/                        307   6e-83
VFI301 (VFI301Q) /CSM/VF/VFI3-A/VFI301Q.Seq.d/                        307   6e-83
VFH823 (VFH823Q) /CSM/VF/VFH8-A/VFH823Q.Seq.d/                        307   6e-83
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ435010) Dictyostelium discoideum cDNA clone:ddv25c21, 3' ...   309   4e-80  1
(AU261822) Dictyostelium discoideum vegetative cDNA clone:VS...   293   2e-75  1
(BJ402717) Dictyostelium discoideum cDNA clone:dds17e19, 3' ...   293   2e-75  1
(BJ402272) Dictyostelium discoideum cDNA clone:dds16f06, 3' ...   293   2e-75  1
(BJ401667) Dictyostelium discoideum cDNA clone:dds19c05, 3' ...   293   2e-75  1
(BJ346101) Dictyostelium discoideum cDNA clone:dda29i04, 3' ...   293   2e-75  1
(BJ345247) Dictyostelium discoideum cDNA clone:dda23i03, 3' ...   293   2e-75  1
(BJ431905) Dictyostelium discoideum cDNA clone:ddv17b01, 3' ...   287   1e-73  1
(BJ434204) Dictyostelium discoideum cDNA clone:ddv16n06, 3' ...   285   5e-73  1
(BJ432323) Dictyostelium discoideum cDNA clone:ddv18i10, 3' ...   285   5e-73  1
dna update 2009. 3.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KM6) RecName: Full=Kynurenine--oxoglutarate transaminase;   ...   133   2e-30
AM270026_16(AM270026|pid:none) Aspergillus niger contig An02c031...    55   1e-06
FJ411012_1(FJ411012|pid:none) Paecilomyces sp. J18 kynurenine am...    53   3e-06
CU928180_448(CU928180|pid:none) Kluyveromyces thermotolerans str...    52   8e-06
AE016818_177(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    52   8e-06
CR382126_68(CR382126|pid:none) Kluyveromyces lactis strain NRRL ...    51   1e-05
CU638743_437(CU638743|pid:none) Podospora anserina genomic DNA c...    51   1e-05
CR380956_211(CR380956|pid:none) Candida glabrata strain CBS138 c...    50   3e-05
AB206815_1(AB206815|pid:none) Hordeum vulgare IDI4 mRNA for puta...    49   4e-05
AL807372_2(AL807372|pid:none) Neurospora crassa DNA linkage grou...    49   5e-05
protein update 2009. 6.24
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VFM182 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFM182Z
3' end seq. 
>VFM182Z.Seq
NNNNNNNNNNTNCTTCNAGTANNCNCTTNCNAGGTGNTCNAGGTANAGATNCCGCNANCN
CTGGTANGGGTTTACATTGACGNGATTGGAATATAGCTCGTTATTTAACAACTGAATATG
GTGTAACTACAATTCCNCCNTCNGCTTTCTATTGTGATGATCATCAAAAAATACCCGAAA
ATTTCGTACGTTTCACTTTTTGTAAAGATGATTTAACTTTGCAAAAAGCTCATGATAATT
TATTAAAATTAAAAAAATAAATCATAATAAATCATAATAAATAATAATAAATAAATAAAT
AAATAATAATAAATAATAATAAATTATAATAAAAATTTATTGNGNGGATTTATAA
Length of 3' end seq. 355
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -