NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFN150
Library AF
(Link to library)
Clone ID AFN150
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFN150P
(Link to Original site)
Representative DNA sequence 
>AFN150 (AFN150Q) /CSM/AF/AFN1-C/AFN150Q.Seq.d/
ATTTTTATTTTTTTTTTTTATAANAAAAAACGACCAACCTTTTGTAATATTAAAAATAAN
GTTATAATTATTATTATTATTTATTATTAAACACNCATTTCAATACATAGCATAATTATA
ATTNCAATTNTAATTTAAAAAAAAAAXXXXXXXXXXANCAACATCATTATCACTCATTTT
TCAATGAAAAAGATCGTAAAGCATTACAAGCAACAGAGAATGAAGTATCCTTACTTCAAT
TGGTAATTCAATGGTTGGAACGTAACCCATTCCTCTATTATAAAGGTTACGATTTTTGGT
CCTCCTACAAATCAGCTGTCGATCAAATCCTTGAAAATGATCTTCAAAGAATTCAAGCAA
ATAATGATCTCTCTCAAGATATGAAAGATCAATCAACCAAAGAAGCTAAAAAGAATATGG
AATCTTTCTCAACACTTTTCGATGAAGTTGCTTATAATGAAAGATTAGAAAAAGGTGAAG
TTAGATTAAGTTATAAAGCATTACAATCAGCAATTTTAATTTATTTATATAAAGATGAAC
CAATTTTCCATACACCATTCCTTATTTTAAATCTTTTAACAGAAATTGATGAATTATTAA
CACATGTGNAGANTCCGTCACCCAATGATGGTACANAGAANTATTGGTGCCAAGATTGGT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
fyfffl*xkttnll*y*k*xynyyyylllnthfnt*HNYNXNXNLKKK---

---QHHYHSFFNEKDRKALQATENEVSLLQLVIQWLERNPFLYYKGYDFWSSYKSAVDQI
LENDLQRIQANNDLSQDMKDQSTKEAKKNMESFSTLFDEVAYNERLEKGEVRLSYKALQS
AILIYLYKDEPIFHTPFLILNLLTEIDELLTHVXXPSPNDGTXXYWCQDW
Translated Amino Acid sequence (All Frames) 
Frame A:
ififffyxkkrptfcniknxviiiiiiyy*txisihsiiiixixi*kk---

---xniiithfsmkkivkhykqqrmkypyfnw*fngwnvthssiikvtifgpptnqlsik
slkmifkefkqimislki*kinqpkklkriwnlsqhfsmkllimkd*kkvkld*vikhyn
qqf*fiyikmnqfsihhslf*if*qklmny*hmxrxrhpmmvxrxigakig

Frame B:
flffffixkndqpfvilkixl*llllfiikhxfqyia*l*xqx*fkkk---

---xtslslifq*krs*sitsnre*siltsignsmvgt*pipll*rlrflvllqiscrsn
p*k*ssknssk**slsryersinqrs*keygiflntfr*scl**kirkr*s*ikl*siti
snfnlfi*r*tnfpytipyfksfnrn**iintcxxsvtq*wyxexlvprl

Frame C:
fyfffl*xkttnll*y*k*xynyyyylllnthfnt*HNYNXNXNLKKK---

---QHHYHSFFNEKDRKALQATENEVSLLQLVIQWLERNPFLYYKGYDFWSSYKSAVDQI
LENDLQRIQANNDLSQDMKDQSTKEAKKNMESFSTLFDEVAYNERLEKGEVRLSYKALQS
AILIYLYKDEPIFHTPFLILNLLTEIDELLTHVXXPSPNDGTXXYWCQDW
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN150 (AFN150Q) /CSM/AF/AFN1-C/AFN150Q.Seq.d/                        971   0.0
SSH813 (SSH813Q) /CSM/SS/SSH8-A/SSH813Q.Seq.d/                        934   0.0
AFJ375 (AFJ375Q) /CSM/AF/AFJ3-D/AFJ375Q.Seq.d/                        494   e-139
AFO124 (AFO124Q) /CSM/AF/AFO1-A/AFO124Q.Seq.d/                        444   e-124
VSF818 (VSF818Q) /CSM/VS/VSF8-A/VSF818Q.Seq.d/                         66   7e-10
VFO525 (VFO525Q) /CSM/VF/VFO5-B/VFO525Q.Seq.d/                         38   0.16
VFM690 (VFM690Q) /CSM/VF/VFM6-D/VFM690Q.Seq.d/                         38   0.16
VFM269 (VFM269Q) /CSM/VF/VFM2-C/VFM269Q.Seq.d/                         38   0.16
VFJ442 (VFJ442Q) /CSM/VF/VFJ4-B/VFJ442Q.Seq.d/                         38   0.16
VFI477 (VFI477Q) /CSM/VF/VFI4-D/VFI477Q.Seq.d/                         38   0.16
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347577) Dictyostelium discoideum cDNA clone:dda27c13, 3' ...   971   0.0    1
(BJ344579) Dictyostelium discoideum cDNA clone:dda19f19, 3' ...   442   e-133  2
(BJ346131) Dictyostelium discoideum cDNA clone:dda29o05, 3' ...   396   e-118  2
(AU038514) Dictyostelium discoideum slug cDNA, clone SSH813.      367   e-113  2
(BJ330141) Dictyostelium discoideum cDNA clone:dda27c13, 5' ...    82   4e-28  2
(BJ327263) Dictyostelium discoideum cDNA clone:dda19f19, 5' ...    76   4e-25  2
(AU265836) Dictyostelium discoideum vegetative cDNA clone:VS...    66   2e-06  1
(AM438411) Vitis vinifera contig VV78X270066.15, whole genom...    36   0.071  2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.38   13
(AG543726) Mus musculus molossinus DNA, clone:MSMg01-457L16....    48   0.43   1
dna update 2009. 4.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DB4) RecName: Full=Tryptophan 2,3-dioxygenase;          Shor...   298   3e-82
(Q2KIQ5) RecName: Full=Tryptophan 2,3-dioxygenase;          Shor...   118   2e-25
(Q6MM37) RecName: Full=Tryptophan 2,3-dioxygenase;          Shor...   115   2e-25
(Q7SY53) RecName: Full=Tryptophan 2,3-dioxygenase B;          Sh...   117   2e-25
AY965263_1(AY965263|pid:none) Chlamys farreri tryptophan 2,3-dio...   110   2e-24
(P48775) RecName: Full=Tryptophan 2,3-dioxygenase;          Shor...   114   2e-24
(Q5EBG2) RecName: Full=Tryptophan 2,3-dioxygenase;          Shor...   114   3e-24
(P48776) RecName: Full=Tryptophan 2,3-dioxygenase;          Shor...   113   4e-24
U24493_1(U24493|pid:none) Mouse tryptophan-2,3-dioxygenase (TDO)...   112   7e-24
(P21643) RecName: Full=Tryptophan 2,3-dioxygenase;          Shor...   112   1e-23
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFN150 is

5' end seq. ID AFN150F
5' end seq. 
>AFN150F.Seq
ATTTTTATTTTTTTTTTTTATAANAAAAAACGACCAACCTTTTGTAATATTAAAAATAAN
GTTATAATTATTATTATTATTTATTATTAAACACNCATTTCAATACATAGCATAATTATA
ATTNCAATTNTAATTTAAAAAAAAAAXXXXXXXXXX
Length of 5' end seq. 156
3' end seq. ID AFN150Z
3' end seq. 
>AFN150Z.Seq
XXXXXXXXXXANCAACATCATTATCACTCATTTTTCAATGAAAAAGATCGTAAAGCATTA
CAAGCAACAGAGAATGAAGTATCCTTACTTCAATTGGTAATTCAATGGTTGGAACGTAAC
CCATTCCTCTATTATAAAGGTTACGATTTTTGGTCCTCCTACAAATCAGCTGTCGATCAA
ATCCTTGAAAATGATCTTCAAAGAATTCAAGCAAATAATGATCTCTCTCAAGATATGAAA
GATCAATCAACCAAAGAAGCTAAAAAGAATATGGAATCTTTCTCAACACTTTTCGATGAA
GTTGCTTATAATGAAAGATTAGAAAAAGGTGAAGTTAGATTAAGTTATAAAGCATTACAA
TCAGCAATTTTAATTTATTTATATAAAGATGAACCAATTTTCCATACACCATTCCTTATT
TTAAATCTTTTAACAGAAATTGATGAATTATTAACACATGTGNAGANTCCGTCACCCAAT
GATGGTACANAGAANTATTGGTGCCAAGATTGGT
Length of 3' end seq. 514
Connected seq. ID AFN150P
Connected seq. 
>AFN150P.Seq
ATTTTTATTTTTTTTTTTTATAANAAAAAACGACCAACCTTTTGTAATATTAAAAATAAN
GTTATAATTATTATTATTATTTATTATTAAACACNCATTTCAATACATAGCATAATTATA
ATTNCAATTNTAATTTAAAAAAAAAA----------ANCAACATCATTATCACTCATTTT
TCAATGAAAAAGATCGTAAAGCATTACAAGCAACAGAGAATGAAGTATCCTTACTTCAAT
TGGTAATTCAATGGTTGGAACGTAACCCATTCCTCTATTATAAAGGTTACGATTTTTGGT
CCTCCTACAAATCAGCTGTCGATCAAATCCTTGAAAATGATCTTCAAAGAATTCAAGCAA
ATAATGATCTCTCTCAAGATATGAAAGATCAATCAACCAAAGAAGCTAAAAAGAATATGG
AATCTTTCTCAACACTTTTCGATGAAGTTGCTTATAATGAAAGATTAGAAAAAGGTGAAG
TTAGATTAAGTTATAAAGCATTACAATCAGCAATTTTAATTTATTTATATAAAGATGAAC
CAATTTTCCATACACCATTCCTTATTTTAAATCTTTTAACAGAAATTGATGAATTATTAA
CACATGTGNAGANTCCGTCACCCAATGATGGTACANAGAANTATTGGTGCCAAGATTGGT
Length of connected seq. 650
Full length Seq ID -
Full length Seq. -
Length of full length seq. -