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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFN141
Library AF
(Link to library)
Clone ID AFN141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFN141 (AFN141Q) /CSM/AF/AFN1-B/AFN141Q.Seq.d/
XXXXXXXXXXGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGT
TGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATNTGGTATCTATTATGAGCC
AAAATGTTCTNCACCTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGG
TANAGATNATGAAGGTCCAGTATTNAACANANANCANACCATTGTTATCCNCAAGAATCA
AGATAANANAGTTNAATCCTCTGATGANTCATCTGATAGTGTTAGACCAAAG
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---SEISLENGAQHGPVSVAIDASHNSFQLYTXGIYYEPKCSXPELDHGVLVVGYGVQGX
DXEGPVXNXXXTIVIXKNQDXXVXSSDXSSDSVRPK
Translated Amino Acid sequence (All Frames) 
Frame A:
---vqrfh*rmvlnmvqyllqlmlpiivsnsihxvsimsqnvlhlnwimvf*llvmvfkv
xxmkvqyxtxxxpllsxrikixxxnplmxhlivldq


Frame B:
---frdfirewcstwssiccn*cfp**fptlyxwyll*akmfxt*igswcfscwlwcsrx
rx*rssixxxxxhcypqesr*xsxil**xi**c*tk


Frame C:
---SEISLENGAQHGPVSVAIDASHNSFQLYTXGIYYEPKCSXPELDHGVLVVGYGVQGX
DXEGPVXNXXXTIVIXKNQDXXVXSSDXSSDSVRPK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN141 (AFN141Q) /CSM/AF/AFN1-B/AFN141Q.Seq.d/                        476   e-134
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        460   e-129
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        460   e-129
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        460   e-129
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        460   e-129
SSK727 (SSK727Q) /CSM/SS/SSK7-B/SSK727Q.Seq.d/                        460   e-129
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        460   e-129
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        460   e-129
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/                        460   e-129
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                        460   e-129
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347482) Dictyostelium discoideum cDNA clone:dda27a11, 3' ...   472   e-129  1
(X03344) Dictyostelium discoideum mRNA for cysteine proteina...   456   e-124  1
(M16039) Dictyostelium discoideum pst-cath gene encoding pst...   456   e-124  1
(AU052270) Dictyostelium discoideum slug cDNA, clone SLA477.      456   e-124  1
(AU051994) Dictyostelium discoideum slug cDNA, clone SSB127.      456   e-124  1
(AU051886) Dictyostelium discoideum slug cDNA, clone SSC322.      456   e-124  1
(AU039933) Dictyostelium discoideum slug cDNA, clone SLG775.      456   e-124  1
(AU039554) Dictyostelium discoideum slug cDNA, clone SLE742.      456   e-124  1
(AU039485) Dictyostelium discoideum slug cDNA, clone SLH872.      456   e-124  1
(AU039319) Dictyostelium discoideum slug cDNA, clone SLH547.      456   e-124  1
dna update 2009. 4.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   117   1e-25
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...    70   3e-11
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...    70   3e-11
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...    65   9e-10
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ...    62   4e-09
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...    62   4e-09
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste...    62   8e-09
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...    62   8e-09
(P13277) RecName: Full=Digestive cysteine proteinase 1;         ...    60   2e-08
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae...    59   4e-08
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFN141 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFN141Z
3' end seq. 
>AFN141Z.Seq
XXXXXXXXXXGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGT
TGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATNTGGTATCTATTATGAGCC
AAAATGTTCTNCACCTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGG
TANAGATNATGAAGGTCCAGTATTNAACANANANCANACCATTGTTATCCNCAAGAATCA
AGATAANANAGTTNAATCCTCTGATGANTCATCTGATAGTGTTAGACCAAAG
Length of 3' end seq. 292
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -