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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFL817
Library VF
(Link to library)
Clone ID VFL817
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09858-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFL817 (VFL817Q) /CSM/VF/VFL8-A/VFL817Q.Seq.d/
ACTGTTGGCCTACTGGNATTTTTAATTCTCAACCCAAATAACCATCTTGTTTATATATAT
AAAAAAATAAAANTAATCACACAATCACACACACACACCTTTAAAACACAAATAAACATA
TAAATAATACCAATAAAATGAAAGTCACAATCAAAAACATTAATAAAGAAATTTATGTTT
TTGAAGTAAATGGAGATTTAACTGTNGCAGAATTAAAAAATTTANTTAGTGAAAAACATA
ATCAAACTCCATCATGGNAAACATTAATTTATAGNGGAAAGATNTTAGAAGATNAACGTG
CACTCGAANCXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence 
cwptgifnsqpk*psclyi*knkxnhtiththl*NTNKHINNTNKMKVTIKNINKEIYVF
EVNGDLTVAELKNLXSEKHNQTPSWXTLIYXGKXLEDXRALE---
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxflilnpnnhlvyiykkikxitqshthtfktqini*iipik*ksqsktlikkfmf
lk*mei*lxqn*kixlvkniiklhhgkh*fixerx*kxnvhsx---


Frame B:
llaywxf*fstqitilfiyikk*x*shnhthtplkhk*tyk*yq*neshnqkh**rnlcf
*skwrfncxrikkfx**kt*snsimxninl*xkdxrrxtctr---


Frame C:
cwptgifnsqpk*psclyi*knkxnhtiththl*NTNKHINNTNKMKVTIKNINKEIYVF
EVNGDLTVAELKNLXSEKHNQTPSWXTLIYXGKXLEDXRALE---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL817 (VFL817Q) /CSM/VF/VFL8-A/VFL817Q.Seq.d/                        260   1e-68
VFO417 (VFO417Q) /CSM/VF/VFO4-A/VFO417Q.Seq.d/                        252   3e-66
VFH384 (VFH384Q) /CSM/VF/VFH3-D/VFH384Q.Seq.d/                        252   3e-66
VFE423 (VFE423Q) /CSM/VF/VFE4-A/VFE423Q.Seq.d/                        252   3e-66
VFD220 (VFD220Q) /CSM/VF/VFD2-A/VFD220Q.Seq.d/                        252   3e-66
SLB153 (SLB153Q) /CSM/SL/SLB1-C/SLB153Q.Seq.d/                        252   3e-66
SFE204 (SFE204Q) /CSM/SF/SFE2-A/SFE204Q.Seq.d/                        252   3e-66
SFD771 (SFD771Q) /CSM/SF/SFD7-C/SFD771Q.Seq.d/                        252   3e-66
SFC339 (SFC339Q) /CSM/SF/SFC3-B/SFC339Q.Seq.d/                        252   3e-66
SFA810 (SFA810Q) /CSM/SF/SFA8-A/SFA810Q.Seq.d/                        252   3e-66
own update 2001.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ415870) Dictyostelium discoideum cDNA clone:ddv24b06, 5' ...   234   8e-84  2
(BJ387278) Dictyostelium discoideum cDNA clone:dds1c09, 5' e...   226   3e-81  2
(BJ325655) Dictyostelium discoideum cDNA clone:dda1h20, 5' e...   226   1e-80  2
(BJ326331) Dictyostelium discoideum cDNA clone:dda16h06, 5' ...   226   5e-76  3
(BJ360457) Dictyostelium discoideum cDNA clone:ddc6n04, 5' e...   226   5e-73  2
(BJ323720) Dictyostelium discoideum cDNA clone:dda11o20, 5' ...   226   7e-73  2
(BJ388343) Dictyostelium discoideum cDNA clone:dds9g02, 5' e...   226   7e-73  2
(BJ329882) Dictyostelium discoideum cDNA clone:dda26j17, 5' ...   226   8e-73  2
(BJ412603) Dictyostelium discoideum cDNA clone:ddv9n06, 5' e...   226   8e-73  2
(BJ328451) Dictyostelium discoideum cDNA clone:dda28a10, 5' ...   226   8e-73  2
dna update 2009. 3.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54LV1) RecName: Full=UV excision repair protein RAD23 homolog;...   103   1e-21
AF103870_1(AF103870|pid:none) Dictyostelium discoideum repC-bind...   103   1e-21
AL844508_220(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    42   0.007
AM910989_193(AM910989|pid:none) Plasmodium knowlesi strain H chr...    39   0.073
AF250284_180(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    37   0.16
AM920435_115(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    37   0.28
EU780426_128(EU780426|pid:none) Spodoptera litura nucleopolyhedr...    36   0.36
EF035042_123(EF035042|pid:none) Spodoptera frugiperda MNPV isola...    36   0.36
AC079933_43(AC079933|pid:none) Trypanosoma brucei chromosome 4 c...    36   0.47
EU586197_1(EU586197|pid:none) Malus x domestica cultivar Fuji po...    35   0.62
protein update 2009. 6.23
PSORT 

 psg: 0.66  gvh: 0.27  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFL817 is nuc
5' end seq. ID VFL817F
5' end seq. 
>VFL817F.Seq
ACTGTTGGCCTACTGGNATTTTTAATTCTCAACCCAAATAACCATCTTGTTTATATATAT
AAAAAAATAAAANTAATCACACAATCACACACACACACCTTTAAAACACAAATAAACATA
TAAATAATACCAATAAAATGAAAGTCACAATCAAAAACATTAATAAAGAAATTTATGTTT
TTGAAGTAAATGGAGATTTAACTGTNGCAGAATTAAAAAATTTANTTAGTGAAAAACATA
ATCAAACTCCATCATGGNAAACATTAATTTATAGNGGAAAGATNTTAGAAGATNAACGTG
CACTCGAANCNNNNNNNNNN
Length of 5' end seq. 320
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -