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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFL581
Library VF
(Link to library)
Clone ID VFL581
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10390-1
Original site URL
Representative seq. ID VFL581P
(Link to Original site)
Representative DNA sequence 
>VFL581 (VFL581Q) /CSM/VF/VFL5-D/VFL581Q.Seq.d/
ACTACAACAAAGAATAGANNGAATAAAGCAATTGTAGAAAAAGAAAAAAATAATAAAGTA
CATGAAATCATTATAGATAATACAAATAATACAGNAATCACTAAAACTCCACCACCATCA
TNACCAAAAGGTAATAATAATAAAANTANTANTANTNNCANTNNTNNTNNTNNNGNNNNT
NNNGNNCNTNNNGXXXXXXXXXXTNNACATCAGCAGCAGCAGCAGCAGGCAANCANCAAT
AGTAAATTAATAATAAAAAAGAAATATTAAGGATCATTTAANCAATAATTTAAAATTTGT
TAGGGCAAGTGGCATTTTCATGTTTTTATATTATTTAACAATGATGTATGTACGTTATCA
ACATAGAGGAGCAATTGGATTTGCTGATACATTATGGTTATGTAATTTATCGATTGTATT
TGGATTCATTTCGATCGCAGTCAATAAACCAATCTTTTTAGGTATCGCTTGCAATTGTAC
ATTAATAGTTCATGCATTATGGGTTGTTGATGTTGTGGCTTGGTTAATCACTGGTTCCTT
CCCATTGGGTAATGCAGAATATATTAGTTGGCCAACTATCACTTGGGGTGAAATTATCAC
TACAACTCATCATGCTTGGTTCGTACCATTATCTATGATTTGTCTTCATAGAAATGGTGG
TTATCCTTACGGTGCTTGGTCAGGTTCAATGTTATGTGTAATACCAGTAGTATATTTATC
AAAATTATTCCCAAAGATTTTAGTTTTACCTGATAATTCAACTTTTTATTTAAATATTAA
TATGGCCCACGAATGGTGGAGTGATATGAATGGCTGGCCATTTTCTTTAATTCCAAATGA
TCCAGCCCAATATTATTTCTTTTTACTTAGTTTTTCATTAGTATTATTTACAACTGCTCA
TTTNCTTAATGAGTATTAGTTTGTTATATCGT
sequence update 2001.11.22
Translated Amino Acid sequence 
TTTKNRXNKAIVEKEKNNKVHEIIIDNTNNTXITKTPPPSXPKGNNNKXXXXXXXXXXXX
XXXX---

---XHQQQQQQAXXNSKLIIKKKY*gsfxq*fkic*gkwhfhvfilfnndvctlst*rsn
wic*yimvm*fidciwihfdrsq*tnlfryrlqlyinsscimgc*ccglvnhwflpig*c
riy*lanyhlg*nyhynssclvrtiiydlss*kwwlslrclvrfnvmcntssifikiipk
dfsft**fnflfky*ygprmve*yewlaiffnsk*sspilflft*ffisiiyncsfx**v
lvcyi
Translated Amino Acid sequence (All Frames) 
Frame A:
TTTKNRXNKAIVEKEKNNKVHEIIIDNTNNTXITKTPPPSXPKGNNNKXXXXXXXXXXXX
XXXX---

---xtsaaaaagxxq**innkkeilrii*xii*nllgqvafscfyii*q*cmyvinieeq
ldllihygyviyrlyldsfrsqsinqsf*vslaivh**fmhygllmlwlg*slvpshwvm
qnilvgqlslgvklslqlimlgsyhyl*fvfiemvviltvlgqvqcyv*yq*yiyqnysq
rf*fyliiqlfi*iliwptnggvi*maghfl*fqmiqpniisfylvfh*yylqllixlms
isllyr

Frame B:
lqqrixxikql*kkkkiikymksl*iiqiiqxslklhhhhxqkviiikxxxxxxxxxxxx
xxxx---

---XHQQQQQQAXXNSKLIIKKKY*gsfxq*fkic*gkwhfhvfilfnndvctlst*rsn
wic*yimvm*fidciwihfdrsq*tnlfryrlqlyinsscimgc*ccglvnhwflpig*c
riy*lanyhlg*nyhynssclvrtiiydlss*kwwlslrclvrfnvmcntssifikiipk
dfsft**fnflfky*ygprmve*yewlaiffnsk*sspilflft*ffisiiyncsfx**v
lvcyi

Frame C:
ynke*xe*sncrkrkk**st*nhyr*yk*yxnh*nsttixtkr****xxxxxxxxxxxxx
xxx---

---xisssssrqxxivn***krnikdhlxnnlkfvrasgifmflyyltmmyvryqhrgai
gfadtlwlcnlsivfgfisiavnkpiflgiacnctlivhalwvvdvvawlitgsfplgna
eyiswptitwgeiittthhawfvplsmiclhrnggypygawsgsmlcvipvvylsklfpk
ilvlpdnstfylninmahewwsdmngwpfslipndpaqyyffllsfslvlfttahxlney
*fvis
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL581 (VFL581Q) /CSM/VF/VFL5-D/VFL581Q.Seq.d/                       1372   0.0
VFH101 (VFH101Q) /CSM/VF/VFH1-A/VFH101Q.Seq.d/                       1059   0.0
VSG342 (VSG342Q) /CSM/VS/VSG3-B/VSG342Q.Seq.d/                         38   0.23
VFK154 (VFK154Q) /CSM/VF/VFK1-C/VFK154Q.Seq.d/                         38   0.23
VFG168 (VFG168Q) /CSM/VF/VFG1-C/VFG168Q.Seq.d/                         38   0.23
SSF166 (SSF166Q) /CSM/SS/SSF1-C/SSF166Q.Seq.d/                         38   0.23
SSB319 (SSB319Q) /CSM/SS/SSB3-A/SSB319Q.Seq.d/                         38   0.23
SHF883 (SHF883Q) /CSM/SH/SHF8-D/SHF883Q.Seq.d/                         38   0.23
SFE482 (SFE482Q) /CSM/SF/SFE4-D/SFE482Q.Seq.d/                         38   0.23
AFL316 (AFL316Q) /CSM/AF/AFL3-A/AFL316Q.Seq.d/                         38   0.23
own update 2004. 7.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ434708) Dictyostelium discoideum cDNA clone:ddv24a21, 3' ...  1364   0.0    1
(BJ431649) Dictyostelium discoideum cDNA clone:ddv15a01, 3' ...  1059   0.0    1
(BJ413293) Dictyostelium discoideum cDNA clone:ddv15a01, 5' ...   208   e-112  4
(BJ416052) Dictyostelium discoideum cDNA clone:ddv24a21, 5' ...   176   3e-52  2
(AZ535282) ENTCV76TF Entamoeba histolytica Sheared DNA Entam...    38   0.002  3
(AC130926) Rattus norvegicus  BAC CH230-39O11 (Children's Ho...    42   0.007  2
(AC103077) Rattus norvegicus  BAC CH230-224J5 (Children's Ho...    42   0.007  2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    38   0.019  8
(AM481950) Vitis vinifera contig VV78X118571.5, whole genome...    40   0.033  4
(AC177002) Strongylocentrotus purpuratus clone R3-37B3, WORK...    48   0.038  5
dna update 2009. 3.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX294156_94(BX294156|pid:none) Rhodopirellula baltica SH 1 compl...    38   0.56
CP000264_2214(CP000264|pid:none) Jannaschia sp. CCS1, complete g...    37   1.2
CP000682_198(CP000682|pid:none) Metallosphaera sedula DSM 5348, ...    36   1.6
CP001019_1044(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co...    36   2.1
AK228906_1(AK228906|pid:none) Arabidopsis thaliana mRNA for suga...    35   2.8
(Q94AF9) RecName: Full=Sugar transporter ERD6-like 11;  &AK31709...    35   2.8
CR382136_453(CR382136|pid:none) Debaryomyces hansenii strain CBS...    35   2.8
(Q93Z80) RecName: Full=Sugar transporter ERD6-like 10;  &AY05805...    35   3.6
CP000826_2564(CP000826|pid:none) Serratia proteamaculans 568, co...    34   8.1
protein update 2009. 2.18
PSORT 

 psg: 0.43  gvh: 0.45  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial

>> prediction for VFL581 is nuc
5' end seq. ID VFL581F
5' end seq. 
>VFL581F.Seq
ACTACAACAAAGAATAGANNGAATAAAGCAATTGTAGAAAAAGAAAAAAATAATAAAGTA
CATGAAATCATTATAGATAATACAAATAATACAGNAATCACTAAAACTCCACCACCATCA
TNACCAAAAGGTAATAATAATAAAANTANTANTANTNNCANTNNTNNTNNTNNNGNNNNT
NNNGNNCNTNNNGNNNNNNNNNN
Length of 5' end seq. 203
3' end seq. ID VFL581Z
3' end seq. 
>VFL581Z.Seq
NNNNNNNNNNTNNACATCAGCAGCAGCAGCAGCAGGCAANCANCAATAGTAAATTAATAA
TAAAAAAGAAATATTAAGGATCATTTAANCAATAATTTAAAATTTGTTAGGGCAAGTGGC
ATTTTCATGTTTTTATATTATTTAACAATGATGTATGTACGTTATCAACATAGAGGAGCA
ATTGGATTTGCTGATACATTATGGTTATGTAATTTATCGATTGTATTTGGATTCATTTCG
ATCGCAGTCAATAAACCAATCTTTTTAGGTATCGCTTGCAATTGTACATTAATAGTTCAT
GCATTATGGGTTGTTGATGTTGTGGCTTGGTTAATCACTGGTTCCTTCCCATTGGGTAAT
GCAGAATATATTAGTTGGCCAACTATCACTTGGGGTGAAATTATCACTACAACTCATCAT
GCTTGGTTCGTACCATTATCTATGATTTGTCTTCATAGAAATGGTGGTTATCCTTACGGT
GCTTGGTCAGGTTCAATGTTATGTGTAATACCAGTAGTATATTTATCAAAATTATTCCCA
AAGATTTTAGTTTTACCTGATAATTCAACTTTTTATTTAAATATTAATATGGCCCACGAA
TGGTGGAGTGATATGAATGGCTGGCCATTTTCTTTAATTCCAAATGATCCAGCCCAATAT
TATTTCTTTTTACTTAGTTTTTCATTAGTATTATTTACAACTGCTCATTTNCTTAATGAG
TATTAGTTTGTTATATCGT
Length of 3' end seq. 739
Connected seq. ID VFL581P
Connected seq. 
>VFL581P.Seq
ACTACAACAAAGAATAGANNGAATAAAGCAATTGTAGAAAAAGAAAAAAATAATAAAGTA
CATGAAATCATTATAGATAATACAAATAATACAGNAATCACTAAAACTCCACCACCATCA
TNACCAAAAGGTAATAATAATAAAANTANTANTANTNNCANTNNTNNTNNTNNNGNNNNT
NNNGNNCNTNNNG----------TNNACATCAGCAGCAGCAGCAGCAGGCAANCANCAAT
AGTAAATTAATAATAAAAAAGAAATATTAAGGATCATTTAANCAATAATTTAAAATTTGT
TAGGGCAAGTGGCATTTTCATGTTTTTATATTATTTAACAATGATGTATGTACGTTATCA
ACATAGAGGAGCAATTGGATTTGCTGATACATTATGGTTATGTAATTTATCGATTGTATT
TGGATTCATTTCGATCGCAGTCAATAAACCAATCTTTTTAGGTATCGCTTGCAATTGTAC
ATTAATAGTTCATGCATTATGGGTTGTTGATGTTGTGGCTTGGTTAATCACTGGTTCCTT
CCCATTGGGTAATGCAGAATATATTAGTTGGCCAACTATCACTTGGGGTGAAATTATCAC
TACAACTCATCATGCTTGGTTCGTACCATTATCTATGATTTGTCTTCATAGAAATGGTGG
TTATCCTTACGGTGCTTGGTCAGGTTCAATGTTATGTGTAATACCAGTAGTATATTTATC
AAAATTATTCCCAAAGATTTTAGTTTTACCTGATAATTCAACTTTTTATTTAAATATTAA
TATGGCCCACGAATGGTGGAGTGATATGAATGGCTGGCCATTTTCTTTAATTCCAAATGA
TCCAGCCCAATATTATTTCTTTTTACTTAGTTTTTCATTAGTATTATTTACAACTGCTCA
TTTNCTTAATGAGTATTAGTTTGTTATATCGT
Length of connected seq. 922
Full length Seq ID -
Full length Seq. -
Length of full length seq. -