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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFL542
Library VF
(Link to library)
Clone ID VFL542
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16505-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFL542 (VFL542Q) /CSM/VF/VFL5-B/VFL542Q.Seq.d/
XXXXXXXXXXTCNTTACNCNCTCCNTTGAATTNTCNAACTAAANANATGGTAAACTNTGA
ATCCNTCGAAAAAATNAAANATGGTGTTATNATTATCAACGTTTCAAAAGGNGCTTTAGT
TAANGCTTNTGANGCNANTGTTGGTTTAAAATCTGGNAAAANCNGNTCNCTTGGNANGGA
TGNCTATGAAAANGAAACCNATTACTTTTANCAANATCCCNATGGNTCNATCNTTAAANA
TGANAATCNCNCTTTATTAATCTCTTAACCNAATGTTATGATCCCNTCCCNNCNAGCNTG
GGACNCNAAAAAAGCCCTTTCTTGGANCTGTGGGACNTCCCNTCAAAANTTCGTTGATTT
TAGATCNAATCNAATTNAAAAANCCAATTTAGTTAANAANCCNATTTCNTCCCNACCCAC
CCNATTAATTAAAAAAAAAAAAAATAATTAAAAATAAAAAAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
---LXXPLNXXTKXMVNXESXEKXKXGVXIINVSKGALVXAXXAXVGLKSGKXXSLGXDX
YEXETXYFXQXPXGSIXKXXNXXLLIS*pnvmipsxxawdxkkalswxcgtsxqxfvdfr
snxixkxnlvxxpissxptxlikkkknn*k*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
---xyxlx*ixxlxxw*txnpskkxxmvlxlstfqkxl*lxlxxxxlv*nlxkxxxlxxm
xmkxkpitfxxipmxxslxmxixly*slnxml*sxpxxxgtxkkpflgxvgxpxkxslil
dxixxkxpi*lxxxfxpxppx*lkkkkiiknkkk


Frame B:
---xtxsxexsn*xxgkl*ixrknxxwcyxyqrfkrxfs*xx*xxcwfkiwxxxxxwxgx
l*kxnxlllxxsxwxxx*x*xsxfinlltxcydpxpxsxgxxkspflxlwdxpskxr*f*
ixsnxkxqfs*xxxfxpthpin*kkkk*lkikk


Frame C:
---LXXPLNXXTKXMVNXESXEKXKXGVXIINVSKGALVXAXXAXVGLKSGKXXSLGXDX
YEXETXYFXQXPXGSIXKXXNXXLLIS*pnvmipsxxawdxkkalswxcgtsxqxfvdfr
snxixkxnlvxxpissxptxlikkkknn*k*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL542 (VFL542Q) /CSM/VF/VFL5-B/VFL542Q.Seq.d/                        470   e-132
VFG394 (VFG394Q) /CSM/VF/VFG3-D/VFG394Q.Seq.d/                        426   e-118
AFO359 (AFO359Q) /CSM/AF/AFO3-C/AFO359Q.Seq.d/                        414   e-115
VFH856 (VFH856Q) /CSM/VF/VFH8-C/VFH856Q.Seq.d/                        404   e-112
VFH519 (VFH519Q) /CSM/VF/VFH5-A/VFH519Q.Seq.d/                        385   e-106
VFF779 (VFF779Q) /CSM/VF/VFF7-D/VFF779Q.Seq.d/                        381   e-105
SFE418 (SFE418Q) /CSM/SF/SFE4-A/SFE418Q.Seq.d/                        379   e-104
VFG876 (VFG876Q) /CSM/VF/VFG8-D/VFG876Q.Seq.d/                        367   e-100
VFE164 (VFE164Q) /CSM/VF/VFE1-C/VFE164Q.Seq.d/                        365   e-100
VFC866 (VFC866Q) /CSM/VF/VFC8-C/VFC866Q.Seq.d/                        361   6e-99
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ434568) Dictyostelium discoideum cDNA clone:ddv24c11, 3' ...   470   e-128  1
(BJ431363) Dictyostelium discoideum cDNA clone:ddv13l23, 3' ...   426   e-115  1
(BJ345937) Dictyostelium discoideum cDNA clone:dda29f15, 3' ...   414   e-111  1
(BJ434384) Dictyostelium discoideum cDNA clone:ddv16p14, 3' ...   400   e-107  1
(BJ434156) Dictyostelium discoideum cDNA clone:ddv16e05, 3' ...   383   e-102  1
(BJ428703) Dictyostelium discoideum cDNA clone:ddv12n19, 3' ...   381   e-101  1
(BJ400164) Dictyostelium discoideum cDNA clone:dds9d06, 3' e...   377   e-100  1
(BJ431615) Dictyostelium discoideum cDNA clone:ddv14h20, 3' ...   367   2e-97  1
(BJ431047) Dictyostelium discoideum cDNA clone:ddv9o15, 3' e...   365   1e-96  1
(BJ430233) Dictyostelium discoideum cDNA clone:ddv6d18, 3' e...   361   1e-95  1
dna update 2009. 3.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UF7) RecName: Full=Putative D-lactate dehydrogenase;        ...   156   2e-37
CP000117_2647(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    70   2e-11
AB1814(AB1814) D-lactate dehydrogenase [imported] - Nostoc sp. (...    70   2e-11
CP001037_2271(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    69   4e-11
AP006841_1461(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    69   7e-11
CP000749_2997(CP000749|pid:none) Marinomonas sp. MWYL1, complete...    69   7e-11
CP000450_1261(CP000450|pid:none) Nitrosomonas eutropha C91, comp...    68   1e-10
CP000139_2426(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    67   2e-10
AE015928_1575(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    67   2e-10
CP000250_2250(CP000250|pid:none) Rhodopseudomonas palustris HaA2...    66   3e-10
protein update 2009. 6.23
PSORT 

 psg: 0.69  gvh: 0.43  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VFL542 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFL542Z
3' end seq. 
>VFL542Z.Seq
NNNNNNNNNNTCNTTACNCNCTCCNTTGAATTNTCNAACTAAANANATGGTAAACTNTGA
ATCCNTCGAAAAAATNAAANATGGTGTTATNATTATCAACGTTTCAAAAGGNGCTTTAGT
TAANGCTTNTGANGCNANTGTTGGTTTAAAATCTGGNAAAANCNGNTCNCTTGGNANGGA
TGNCTATGAAAANGAAACCNATTACTTTTANCAANATCCCNATGGNTCNATCNTTAAANA
TGANAATCNCNCTTTATTAATCTCTTAACCNAATGTTATGATCCCNTCCCNNCNAGCNTG
GGACNCNAAAAAAGCCCTTTCTTGGANCTGTGGGACNTCCCNTCAAAANTTCGTTGATTT
TAGATCNAATCNAATTNAAAAANCCAATTTAGTTAANAANCCNATTTCNTCCCNACCCAC
CCNATTAATTAAAAAAAAAAAAAATAATTAAAAATAAAAAAAAA
Length of 3' end seq. 464
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -