>VFL440 (VFL440Q) /CSM/VF/VFL4-B/VFL440Q.Seq.d/
XXXXXXXXXXAAAAATTCGATGCAACAATCATTGCATTAGTACCAAGTACAATTAGGTTT
GATGGTTTATGTGATTTTCAATATCTTATTAAATCAGATAATAATAATACAAAATCAGAA
AGTGATAATGTGAATGATAGTTCATCATCATCATCATCAAAAACAGTACCAATAACTAAA
CAAAAGGATCAATATTATGTTCAACAATATAGTGATAATAATGAAATTATGAAAGATGAA
CCAATGAATTTAATACCACCATTATTCTCAAGAATTGATTTCCCTCAAAATTATTTATTC
AAAGCTAATCCAAATGCTCAATTCGATAAAACATCAAAACAATTTGTTTTTGCAAAACAA
ACTACTCGTAAAGCTACTGGTCATGCTAAATTTAATAATGTAATCCCAGTTGCACCACAA
GAATTACCAAAAGTATTTGGAGTAAATGAATTAATGAAAAAGACAAGGGATATATTAGTT
GCACTTTTTGAGAAAAGACCAATTTGGTTATATATATCATTATTGGATAAAGTTCAAAAA
GAGGGTGGTTTAGTAGCTCATACTAAAAGAGTATTACCATCATTAGCATTCAATTTCGTC
GATGGACCTTGGAGAAAATGTTGGGTTAAATTAGGTTTCGATCCAAGAATTCATCCTGAA
ACTTCTCAATATCAAACAATNATTTTAGAATTTCNAACAAGATAATCATTATC

---KFDATIIALVPSTIRFDGLCDFQYLIKSDNNNTKSESDNVNDSSSSSSSKTVPITKQ
KDQYYVQQYSDNNEIMKDEPMNLIPPLFSRIDFPQNYLFKANPNAQFDKTSKQFVFAKQT
TRKATGHAKFNNVIPVAPQELPKVFGVNELMKKTRDILVALFEKRPIWLYISLLDKVQKE
GGLVAHTKRVLPSLAFNFVDGPWRKCWVKLGFDPRIHPETSQYQTXILEFXTR*sl

Frame A:
---kircnnhcistkyn*v*wfm*fsisy*ir***ykirk**ce**fiiiiiknstnn*t
kgsilcsti*****nyer*tnefnttiilkn*fpsklfiqs*skcsir*nikticfcktn
ys*sywsc*i**cnpscttritksiwsk*inekdkgyisctf*ektnlviyiiig*sskr
gwfsssy*ksitiisiqfrrwtlekmlg*irfrsknss*nfsisnnxfrisnkiiii


Frame B:
---KFDATIIALVPSTIRFDGLCDFQYLIKSDNNNTKSESDNVNDSSSSSSSKTVPITKQ
KDQYYVQQYSDNNEIMKDEPMNLIPPLFSRIDFPQNYLFKANPNAQFDKTSKQFVFAKQT
TRKATGHAKFNNVIPVAPQELPKVFGVNELMKKTRDILVALFEKRPIWLYISLLDKVQKE
GGLVAHTKRVLPSLAFNFVDGPWRKCWVKLGFDPRIHPETSQYQTXILEFXTR*sl


Frame C:
---nsmqqslh*yqvqlglmvyvifnillnqiiiiqnqkvim*mivhhhhhqkqyq*lnk
rinimfnniviimkl*kmnq*i*yhhysqelislkiiyskliqmlnsikhqnnlflqnkl
lvkllvmlnlim*sqlhhknyqkyle*mn**krqgiy*lhflrkdqfgyiyhywikfkkr
vv**lilkeyyhh*hsissmdlgenvgln*vsiqefilkllnikqxf*nfxqdnhy

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL440 (VFL440Q) /CSM/VF/VFL4-B/VFL440Q.Seq.d/                       1086   0.0
VSE834 (VSE834Q) /CSM/VS/VSE8-B/VSE834Q.Seq.d/                         38   0.18
VSD646 (VSD646Q) /CSM/VS/VSD6-B/VSD646Q.Seq.d/                         38   0.18
VSC829 (VSC829Q) /CSM/VS/VSC8-B/VSC829Q.Seq.d/                         38   0.18
VHN714 (VHN714Q) /CSM/VH/VHN7-A/VHN714Q.Seq.d/                         38   0.18
SSM608 (SSM608Q) /CSM/SS/SSM6-A/SSM608Q.Seq.d/                         38   0.18
SSM118 (SSM118Q) /CSM/SS/SSM1-A/SSM118Q.Seq.d/                         38   0.18
SSI676 (SSI676Q) /CSM/SS/SSI6-D/SSI676Q.Seq.d/                         38   0.18
SSI478 (SSI478Q) /CSM/SS/SSI4-D/SSI478Q.Seq.d/                         38   0.18
SSH669 (SSH669Q) /CSM/SS/SSH6-C/SSH669Q.Seq.d/                         38   0.18

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ433957) Dictyostelium discoideum cDNA clone:ddv23p10, 3' ...  1086   0.0    2
(FJ172159) Human enterovirus 71 isolate NUH0075/SIN/08, comp...    52   0.029  1
(EU868611) Human enterovirus 71 isolate NUH0075/SIN/08 polyp...    52   0.029  1
(CS327670) Sequence 5 from Patent EP1674582.                       50   0.11   1
(AC131042) Homo sapiens chromosome 8, clone CTD-2607C6, comp...    50   0.11   1
(AC011200) Homo sapiens chromosome 8 clone RP11-71N3, comple...    50   0.11   1
(AC103723) Homo sapiens chromosome 8 clone RP11-719O18 map 8...    50   0.11   1
(AC090275) Homo sapiens chromosome 8 clone RP1-171I8 map 8, ...    50   0.11   1
(AC090262) Homo sapiens chromosome 8 clone RP11-71N3 map 8, ...    50   0.11   1
(AF215843) Homo sapiens chromosome 8 clone RP1-171I8 map 8qt...    50   0.11   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN357420_10(FN357420|pid:none) Schistosoma mansoni genome sequen...    78   2e-13
BC027247_1(BC027247|pid:none) Mus musculus general transcription...    77   4e-13
BC009741_1(BC009741|pid:none) Homo sapiens general transcription...    77   5e-13
(Q9H4P2) RecName: Full=General transcription factor 3C polypepti...    77   5e-13
AF133124_1(AF133124|pid:none) Homo sapiens transcription factor ...    77   5e-13
AK097295_1(AK097295|pid:none) Homo sapiens cDNA FLJ39976 fis, cl...    77   5e-13
BC030157_1(BC030157|pid:none) Homo sapiens general transcription...    77   5e-13
AB168625_1(AB168625|pid:none) Macaca fascicularis testis cDNA cl...    77   5e-13
CR380956_422(CR380956|pid:none) Candida glabrata strain CBS138 c...    71   4e-11
CU928175_705(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    70   8e-11

 psg: 0.92  gvh: 0.36  alm: 0.40  top: 0.40  tms: 0.00  mit: 0.22  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane

>> prediction for VFL440 is cyt

>VFL440Z.Seq
NNNNNNNNNNAAAAATTCGATGCAACAATCATTGCATTAGTACCAAGTACAATTAGGTTT
GATGGTTTATGTGATTTTCAATATCTTATTAAATCAGATAATAATAATACAAAATCAGAA
AGTGATAATGTGAATGATAGTTCATCATCATCATCATCAAAAACAGTACCAATAACTAAA
CAAAAGGATCAATATTATGTTCAACAATATAGTGATAATAATGAAATTATGAAAGATGAA
CCAATGAATTTAATACCACCATTATTCTCAAGAATTGATTTCCCTCAAAATTATTTATTC
AAAGCTAATCCAAATGCTCAATTCGATAAAACATCAAAACAATTTGTTTTTGCAAAACAA
ACTACTCGTAAAGCTACTGGTCATGCTAAATTTAATAATGTAATCCCAGTTGCACCACAA
GAATTACCAAAAGTATTTGGAGTAAATGAATTAATGAAAAAGACAAGGGATATATTAGTT
GCACTTTTTGAGAAAAGACCAATTTGGTTATATATATCATTATTGGATAAAGTTCAAAAA
GAGGGTGGTTTAGTAGCTCATACTAAAAGAGTATTACCATCATTAGCATTCAATTTCGTC
GATGGACCTTGGAGAAAATGTTGGGTTAAATTAGGTTTCGATCCAAGAATTCATCCTGAA
ACTTCTCAATATCAAACAATNATTTTAGAATTTCNAACAAGATAATCATTATC