VFL417
Library VF
(Link to library)
Clone ID VFL417
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11292-1
Original site URL
Representative seq. ID VFL417E
(Link to Original site)
Representative DNA sequence
>VFL417 (VFL417Q) /CSM/VF/VFL4-A/VFL417Q.Seq.d/
TGTTATAGTCTATTGGTTACTACGTGGTGAAAAGAATTCAATGGAGATGTTACCACCAAA
TATTCAAACTAGATCAGCCGAGAATGGAATTTACAATAGTATTGTATCTGACCAACTTTT
CACCTCTAGAAGATTGAATGGCTCAAATAGACCATACAATGATTTCGTTAGAGTTGAAAG
TTGTAAAGAGAATAACTATGGTGAATGGAACTATGAATTAAGATTGGATTCATCAGGATA
TGAATTAAAACAAGATGTTTGGTTTCCAAAAGAAACATGTTGTAGATTTAAACTTAAGGA
AAATGAAAATCATAATGATAATGATGAAGATAATGAAAATGAATTAATTATAAAATCAAT
TGCATATAGAATGAATGATTATGGTGATGGTGATGGTGATGGTGATGATGGATGGGATAG
TTCAACAAGCTGATGATTCAAAAGAATGGAATGATTTAAAAGTTAAATATATGATGGTTG
AATTTAATTATAATATTAATTGGGGTCATGTTGGTGTACATTTTGTTGTGGAAATGTTTA
ATATGGCATTTTATAGAAATATTATAAATAATCCAATAAAGAAATTACTTTATCCACATT
TCGATGGTGTAATATTTAATAATTGGTTAGTGGTAAGACCGATGCTTGATGGTGTTGTCA
CTCAAAGCTGCTGCTTTCACATATGAAGGTCAAGTTCAAATGCTACAAAAGAGATTCAGT
CAAACAACTTATAAATGGAGACCAACACCAATTAATGATAAAATTAAAGGTCATGTTTAT
GATACCTCCAGTCAAGCCATTTGGGACGCAATCACTGAATATGTTGATGAATGGTTTTTA
GAGAATAAAGAAGATACTCTAAAAGTATGGAATGAAATTGAACTGGTTTCAGATGATTTA
GTTCAACATTGTTTAAATGCTGATAAAAGTGCAAATGAAATTAAAAATATTCAAGATCTT
AGAGATTGTTCAATATTTATCATTTATCAGGCTGTTTTCTCTCATGCATACGTTCATTGG
AAAGCTTGGGATGAAGAAGCAAAAGCTATCATTTTCAATCAAGATGGTGCCACCACTAAA
AAAGATATTAAATATTACGAAAATCTTGGTAATGCAATTGAAGCAGGTGTTCAGTATCCA
TCTCCTTATGTTAGACAATATCCAATCTTGGATGTTGAATTTGGTGGTCCTGAATTATTA
CAAAAGAAAATTTGGAAATATGCTCATAAAATTAATCCTGCAATTTCAATTGGTTCTTTA
ATTATGTCACCAAATATTTAAAAATNATNATAAAATAA
sequence update 2001.11.24
Translated Amino Acid sequence
cysllvttw*kefngdvttkysn*isrewnlq*yci*ptfhl*kiewlk*tiq*fr*s*k
l*re*lw*mel*ikigfiri*iktrclvskrnml*i*t*gk*ks*****r**k*inykin
ci*ne*lw*w*w*w**wmg*fnklmiqkngmi*klni*wlnliiiligvmlvyillwkcl
iwhfieil*iiq*rnyfihismv*yliig*w*DRCLMVLSLKAAAFTYEGQVQMLQKRFS
QTTYKWRPTPINDKIKGHVYDTSSQAIWDAITEYVDEWFLENKEDTLKVWNEIELVSDDL
VQHCLNADKSANEIKNIQDLRDCSIFIIYQAVFSHAYVHWKAWDEEAKAIIFNQDGATTK
KDIKYYENLGNAIEAGVQYPSPYVRQYPILDVEFGGPELLQKKIWKYAHKINPAISIGSL
IMSPNI*kxx*n


Translated Amino Acid sequence (All Frames)
Frame A:
cysllvttw*kefngdvttkysn*isrewnlq*yci*ptfhl*kiewlk*tiq*fr*s*k
l*re*lw*mel*ikigfiri*iktrclvskrnml*i*t*gk*ks*****r**k*inykin
ci*ne*lw*w*w*w**wmg*fnklmiqkngmi*klni*wlnliiiligvmlvyillwkcl
iwhfieil*iiq*rnyfihismv*yliig*w*DRCLMVLSLKAAAFTYEGQVQMLQKRFS
QTTYKWRPTPINDKIKGHVYDTSSQAIWDAITEYVDEWFLENKEDTLKVWNEIELVSDDL
VQHCLNADKSANEIKNIQDLRDCSIFIIYQAVFSHAYVHWKAWDEEAKAIIFNQDGATTK
KDIKYYENLGNAIEAGVQYPSPYVRQYPILDVEFGGPELLQKKIWKYAHKINPAISIGSL
IMSPNI*kxx*n


Frame B:
vivywllrgeknsmemlppniqtrsaengiynsivsdqlftsrrlngsnrpyndfvrves
ckennygewnyelrldssgyelkqdvwfpketccrfklkenenhndndedneneliiksi
ayrmndygdgdgdgddgwdssts**fkrme*fks*iydg*i*l*y*lgscwctfccgnv*
ygil*kyyk*snkeitlstfrwcni**lvsgktda*wcchsklllshmkvkfkcykrdsv
kqlingdqhqlmiklkvmfmippvkpfgtqslnmlmngf*rikkil*kygmklnwfqmi*
fniv*mlikvqmklkifkileivqylsfirlfslmhtfigklgmkkqklsfsikmvpplk
kilnitkilvmqlkqvfsihllmldniqswmlnlvvlnyykrkfgnmliklilqfqlvl*
lchqifknxxki


Frame C:
l*sigyyvvkriqwrcyhqifkldqprmeftivlyltnfspled*maqidhtmislelkv
vkritmvngtmn*dwihqdmn*nkmfgfqkkhvvdlnlrkmkiimimmkimkmn*l*nql
hie*mimvmvmvmvmmdgivqqaddskewndlkvkymmvefnyninwghvgvhfvvemfn
mafyrniinnpikkllyphfdgvifnnwlvvrpmldgvvtqsccfhi*rsssnatkeiqs
nnl*metntn***n*rscl*ylqsshlgrnh*ic**mvfre*rrysksme*n*tgfr*fs
stlfkc**kck*n*kysrs*rlfniyhlsgcflscirsleslg*rsksyhfqsrwchh*k
ry*ilrksw*cn*srcsvsislc*tisnlgc*iwws*iitkenleics*n*scnfnwffn
yvtkylkxxik*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL417 (VFL417Q) /CSM/VF/VFL4-A/VFL417Q.Seq.d/ 1739 0.0
AHE223 (AHE223Q) /CSM/AH/AHE2-A/AHE223Q.Seq.d/ 1396 0.0
SSB326 (SSB326Q) /CSM/SS/SSB3-B/SSB326Q.Seq.d/ 1043 0.0
SSI528 (SSI528Q) /CSM/SS/SSI5-B/SSI528Q.Seq.d/ 44 0.005
SSI504 (SSI504Q) /CSM/SS/SSI5-A/SSI504Q.Seq.d/ 44 0.005
SFD173 (SFD173Q) /CSM/SF/SFD1-D/SFD173Q.Seq.d/ 44 0.005
CFK474 (CFK474Q) /CSM/CF/CFK4-D/CFK474Q.Seq.d/ 44 0.005
CFK450 (CFK450Q) /CSM/CF/CFK4-C/CFK450Q.Seq.d/ 44 0.005
AHD365 (AHD365Q) /CSM/AH/AHD3-C/AHD365Q.Seq.d/ 44 0.005
VFG622 (VFG622Q) /CSM/VF/VFG6-A/VFG622Q.Seq.d/ 42 0.021

own update 2003. 6.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ433810) Dictyostelium discoideum cDNA clone:ddv23b06, 3' ... 1372 0.0 1
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 1235 0.0 2
(BJ350228) Dictyostelium discoideum cDNA clone:dda39m06, 3' ... 1162 0.0 3
(BJ415573) Dictyostelium discoideum cDNA clone:ddv23b06, 5' ... 591 0.0 3
(C84217) Dictyostelium discoideum slug cDNA, clone SSB326. 668 0.0 1
(AU071369) Dictyostelium discoideum slug cDNA, clone SSB326. 440 e-119 1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 36 0.030 17
(FI217199) CccaBa060-L24TR CccABa Cajanus cajan genomic clon... 50 0.047 2
(FI199692) CccaBa031-N10TR CccABa Cajanus cajan genomic clon... 50 0.047 2
(EJ424712) 1093012257626 Global-Ocean-Sampling_GS-28-01-01-1... 50 0.067 2
dna update 2009. 3.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000113_1709(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 39 2e-05
EU325569_1(EU325569|pid:none) Capsicum annuum lypoxygenase (LOX)... 31 0.13
U04526_1(U04526|pid:none) Glycine max cv. Williams 82 lipoxygena... 37 0.16
CP000828_770(CP000828|pid:none) Acaryochloris marina MBIC11017, ... 40 0.24
CP000302_1667(CP000302|pid:none) Shewanella denitrificans OS217,... 39 0.41
CP000806_2644(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 39 0.54
CP000828_3465(CP000828|pid:none) Acaryochloris marina MBIC11017,... 39 0.54
CP000828_3800(CP000828|pid:none) Acaryochloris marina MBIC11017,... 38 0.70
DQ494210_1(DQ494210|pid:none) Synthetic construct linoleate oxyg... 37 1.2
AJ293015_1(AJ293015|pid:none) Pisum sativum lox1:Ps:7 gene for l... 37 1.2
protein update 2009. 3. 9
PSORT

psg: 0.77 gvh: 0.61 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VFL417 is cyt

5' end seq. ID VFL417F
5' end seq.
>VFL417F.Seq
TGTTATAGTCTATTGGTTACTACGTGGTGAAAAGAATTCAATGGAGATGTTACCACCAAA
TATTCAAACTAGATCAGCCGAGAATGGAATTTACAATAGTATTGTATCTGACCAACTTTT
CACCTCTAGAAGATTGAATGGCTCAAATAGACCATACAATGATTTCGTTAGAGTTGAAAG
TTGTAAAGAGAATAACTATGGTGAATGGAACTATGAATTAAGATTGGATTCATCAGGATA
TGAATTAAAACAAGATGTTTGGTTTCCAAAAGAAACATGTTGTAGATTTAAACTTAAGGA
AAATGAAAATCATAATGATAATGATGAAGATAATGAAAATGAATTAATTATAAAATCAAT
TGCATATAGAATGAATGATTATGGTGATGGTGATGGTGATGGTGATGATGGATGGGATAG
TTCAACAAGCTGATGATTCAAAAGAATGGAATGATTTAAAAGTTAAATATATGATGGTTG
AATTTAATTATAATATTAATTGGGGTCATGTTGGTGTACATTTTGTTGTGGAAATGTTTA
ATATGGCATTTTATAGAAATATTATAAATAATCCAATAAAGAAATTACTTTATCCACATT
TCGATGGTGTAATATTTAATAATTGGTTAGTGGTAAGACCGATGCTTGATGGTGTTGTCA
CTCAAGCTGCTGCTTTCACATATGANNNNNNNNNN
Length of 5' end seq. 695
3' end seq. ID VFL417Z
3' end seq.
>VFL417Z.Seq
NNNNNNNNNNTCGATGGTGTAATATTTAATAATTGGTTAGTGGTAAGACCGATGCTTGAT
GGTGTTGTCACTCAAAGCTGCTGCTTTCACATATGAAGGTCAAGTTCAAATGCTACAAAA
GAGATTCAGTCAAACAACTTATAAATGGAGACCAACACCAATTAATGATAAAATTAAAGG
TCATGTTTATGATACCTCCAGTCAAGCCATTTGGGACGCAATCACTGAATATGTTGATGA
ATGGTTTTTAGAGAATAAAGAAGATACTCTAAAAGTATGGAATGAAATTGAACTGGTTTC
AGATGATTTAGTTCAACATTGTTTAAATGCTGATAAAAGTGCAAATGAAATTAAAAATAT
TCAAGATCTTAGAGATTGTTCAATATTTATCATTTATCAGGCTGTTTTCTCTCATGCATA
CGTTCATTGGAAAGCTTGGGATGAAGAAGCAAAAGCTATCATTTTCAATCAAGATGGTGC
CACCACTAAAAAAGATATTAAATATTACGAAAATCTTGGTAATGCAATTGAAGCAGGTGT
TCAGTATCCATCTCCTTATGTTAGACAATATCCAATCTTGGATGTTGAATTTGGTGGTCC
TGAATTATTACAAAAGAAAATTTGGAAATATGCTCATAAAATTAATCCTGCAATTTCAAT
TGGTTCTTTAATTATGTCACCAAATATTTAAAAATNATNATAAAATAA
Length of 3' end seq. 708
Connected seq. ID VFL417P
Connected seq.
>VFL417P.Seq
TGTTATAGTCTATTGGTTACTACGTGGTGAAAAGAATTCAATGGAGATGTTACCACCAAA
TATTCAAACTAGATCAGCCGAGAATGGAATTTACAATAGTATTGTATCTGACCAACTTTT
CACCTCTAGAAGATTGAATGGCTCAAATAGACCATACAATGATTTCGTTAGAGTTGAAAG
TTGTAAAGAGAATAACTATGGTGAATGGAACTATGAATTAAGATTGGATTCATCAGGATA
TGAATTAAAACAAGATGTTTGGTTTCCAAAAGAAACATGTTGTAGATTTAAACTTAAGGA
AAATGAAAATCATAATGATAATGATGAAGATAATGAAAATGAATTAATTATAAAATCAAT
TGCATATAGAATGAATGATTATGGTGATGGTGATGGTGATGGTGATGATGGATGGGATAG
TTCAACAAGCTGATGATTCAAAAGAATGGAATGATTTAAAAGTTAAATATATGATGGTTG
AATTTAATTATAATATTAATTGGGGTCATGTTGGTGTACATTTTGTTGTGGAAATGTTTA
ATATGGCATTTTATAGAAATATTATAAATAATCCAATAAAGAAATTACTTTATCCACATT
TCGATGGTGTAATATTTAATAATTGGTTAGTGGTAAGACCGATGCTTGATGGTGTTGTCA
CTCAAGCTGCTGCTTTCACATATGA----------TCGATGGTGTAATATTTAATAATTG
GTTAGTGGTAAGACCGATGCTTGATGGTGTTGTCACTCAAAGCTGCTGCTTTCACATATG
AAGGTCAAGTTCAAATGCTACAAAAGAGATTCAGTCAAACAACTTATAAATGGAGACCAA
CACCAATTAATGATAAAATTAAAGGTCATGTTTATGATACCTCCAGTCAAGCCATTTGGG
ACGCAATCACTGAATATGTTGATGAATGGTTTTTAGAGAATAAAGAAGATACTCTAAAAG
TATGGAATGAAATTGAACTGGTTTCAGATGATTTAGTTCAACATTGTTTAAATGCTGATA
AAAGTGCAAATGAAATTAAAAATATTCAAGATCTTAGAGATTGTTCAATATTTATCATTT
ATCAGGCTGTTTTCTCTCATGCATACGTTCATTGGAAAGCTTGGGATGAAGAAGCAAAAG
CTATCATTTTCAATCAAGATGGTGCCACCACTAAAAAAGATATTAAATATTACGAAAATC
TTGGTAATGCAATTGAAGCAGGTGTTCAGTATCCATCTCCTTATGTTAGACAATATCCAA
TCTTGGATGTTGAATTTGGTGGTCCTGAATTATTACAAAAGAAAATTTGGAAATATGCTC
ATAAAATTAATCCTGCAATTTCAATTGGTTCTTTAATTATGTCACCAAATATTTAAAAAT
NATNATAAAATAA
Length of connected seq. 1383
Full length Seq ID VFL417E
Full length Seq.
>VFL417E.Seq
TGTTATAGTCTATTGGTTACTACGTGGTGAAAAGAATTCAATGGAGATGTTACCACCAAA
TATTCAAACTAGATCAGCCGAGAATGGAATTTACAATAGTATTGTATCTGACCAACTTTT
CACCTCTAGAAGATTGAATGGCTCAAATAGACCATACAATGATTTCGTTAGAGTTGAAAG
TTGTAAAGAGAATAACTATGGTGAATGGAACTATGAATTAAGATTGGATTCATCAGGATA
TGAATTAAAACAAGATGTTTGGTTTCCAAAAGAAACATGTTGTAGATTTAAACTTAAGGA
AAATGAAAATCATAATGATAATGATGAAGATAATGAAAATGAATTAATTATAAAATCAAT
TGCATATAGAATGAATGATTATGGTGATGGTGATGGTGATGGTGATGATGGATGGGATAG
TTCAACAAGCTGATGATTCAAAAGAATGGAATGATTTAAAAGTTAAATATATGATGGTTG
AATTTAATTATAATATTAATTGGGGTCATGTTGGTGTACATTTTGTTGTGGAAATGTTTA
ATATGGCATTTTATAGAAATATTATAAATAATCCAATAAAGAAATTACTTTATCCACATT
TCGATGGTGTAATATTTAATAATTGGTTAGTGGTAAGACCGATGCTTGATGGTGTTGTCA
CTCAAAGCTGCTGCTTTCACATATGAAGGTCAAGTTCAAATGCTACAAAAGAGATTCAGT
CAAACAACTTATAAATGGAGACCAACACCAATTAATGATAAAATTAAAGGTCATGTTTAT
GATACCTCCAGTCAAGCCATTTGGGACGCAATCACTGAATATGTTGATGAATGGTTTTTA
GAGAATAAAGAAGATACTCTAAAAGTATGGAATGAAATTGAACTGGTTTCAGATGATTTA
GTTCAACATTGTTTAAATGCTGATAAAAGTGCAAATGAAATTAAAAATATTCAAGATCTT
AGAGATTGTTCAATATTTATCATTTATCAGGCTGTTTTCTCTCATGCATACGTTCATTGG
AAAGCTTGGGATGAAGAAGCAAAAGCTATCATTTTCAATCAAGATGGTGCCACCACTAAA
AAAGATATTAAATATTACGAAAATCTTGGTAATGCAATTGAAGCAGGTGTTCAGTATCCA
TCTCCTTATGTTAGACAATATCCAATCTTGGATGTTGAATTTGGTGGTCCTGAATTATTA
CAAAAGAAAATTTGGAAATATGCTCATAAAATTAATCCTGCAATTTCAATTGGTTCTTTA
ATTATGTCACCAAATATTTAAAAATNATNATAAAATAA
Length of full length seq. 1298