AFM880
Library AF
(Link to library)
Clone ID AFM880
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM880 (AFM880Q) /CSM/AF/AFM8-D/AFM880Q.Seq.d/
ACTTTTACTTAAATAATTTCCAAAATGTCAGAAACTACACCAGTTCCTGTTGGCGAAGCA
GGTGAAAAAAGTGCTACAGCATTAAAAAAAGAACAAAAGAAATTAGAAAAAGAGAAAAAG
ATAGCAGAAGCTAAAGCAAAGAAAGCCGCTGAGAAATCAGCAGCAAGTGGTAATAGTGGT
GAACAAAAGAATGAAAAGAAACAAGAACAAGTTGAAGAGAATAATAGTAATTGGGGTGAA
TTACCAATGAATCAAAGTAAAGAAAAGATTACAAGAGAATGGACAGATGTATCACAATTG
ACAGAATCATTAGTTGGTAAATCAGTATTAATTCGTGCACGTCTTTCAACAAGTCGTTTA
CAAGGTGCCAATCTTTGTTTTGTACAATTAAGAGATGGTTTATATACAGTTCAAGCAGTT
GTTGCCAAAGGTGGATCCAACTCGAAATCAATGGTGCAATTTGTTGGACAAGTTCCAAAG
GAATCCATTGTTGACGTTCAAGCAACCCGTTGTCTCAACCAGTGTACCAATTGAAAGTTG
TACACAAAAATCCGTAGAAXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence
tft*IISKMSETTPVPVGEAGEKSATALKKEQKKLEKEKKIAEAKAKKAAEKSAASGNSG
EQKNEKKQEQVEENNSNWGELPMNQSKEKITREWTDVSQLTESLVGKSVLIRARLSTSRL
QGANLCFVQLRDGLYTVQAVVAKGGSNSKSMVQFVGQVPKESIVDVQATRCLNQCTN*kl
ytkirr---


Translated Amino Acid sequence (All Frames)
Frame A:
tft*IISKMSETTPVPVGEAGEKSATALKKEQKKLEKEKKIAEAKAKKAAEKSAASGNSG
EQKNEKKQEQVEENNSNWGELPMNQSKEKITREWTDVSQLTESLVGKSVLIRARLSTSRL
QGANLCFVQLRDGLYTVQAVVAKGGSNSKSMVQFVGQVPKESIVDVQATRCLNQCTN*kl
ytkirr---


Frame B:
lllk*fpkcqklhqfllakqvkkvlqh*kknkrn*kkrkr*qklkqrkplrnqqqvvivv
nkrmkrnknklkriivigvnyq*ikvkkrlqengqmyhn*qnh*lvnqy*fvhvfqqvvy
kvpifvlyn*emvyiqfkqllpkvdptrnqwcnlldkfqrnplltfkqpvvstsvpiesc
tqksv---


Frame C:
fylnnfqnvrnytsscwrsr*kkcysikkrtkeirkrekdsrs*skesr*eisskw**w*
tke*ketrts*re***lg*itnesk*rkdykrmdrcitidriisw*isinsctsfnksft
rcqslfctikrwfiyssssccqrwiqleingaicwtsskgihc*rssnplsqpvyqlkvv
hknp*---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFD751 (VFD751Q) /CSM/VF/VFD7-C/VFD751Q.Seq.d/ 821 0.0
CFI740 (CFI740Q) /CSM/CF/CFI7-B/CFI740Q.Seq.d/ 821 0.0
CFG348 (CFG348Q) /CSM/CF/CFG3-B/CFG348Q.Seq.d/ 821 0.0
AFM880 (AFM880Q) /CSM/AF/AFM8-D/AFM880Q.Seq.d/ 821 0.0
VFI448 (VFI448Q) /CSM/VF/VFI4-B/VFI448Q.Seq.d/ 805 0.0
VFC714 (VFC714Q) /CSM/VF/VFC7-A/VFC714Q.Seq.d/ 805 0.0
SFH292 (SFH292Q) /CSM/SF/SFH2-D/SFH292Q.Seq.d/ 805 0.0
SFG652 (SFG652Q) /CSM/SF/SFG6-C/SFG652Q.Seq.d/ 805 0.0
CFJ701 (CFJ701Q) /CSM/CF/CFJ7-A/CFJ701Q.Seq.d/ 805 0.0
CFJ455 (CFJ455Q) /CSM/CF/CFJ4-C/CFJ455Q.Seq.d/ 805 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ329985) Dictyostelium discoideum cDNA clone:dda26p20, 5' ... 777 0.0 2
(BJ359228) Dictyostelium discoideum cDNA clone:ddc13p11, 5' ... 777 0.0 2
(BJ330066) Dictyostelium discoideum cDNA clone:dda27c12, 5' ... 674 0.0 3
(BJ327084) Dictyostelium discoideum cDNA clone:dda19h02, 5' ... 674 0.0 3
(BJ362068) Dictyostelium discoideum cDNA clone:ddc20b01, 5' ... 674 0.0 3
(BJ328044) Dictyostelium discoideum cDNA clone:dda22a19, 5' ... 674 0.0 3
(BJ413940) Dictyostelium discoideum cDNA clone:ddv17p12, 5' ... 674 0.0 3
(BJ391258) Dictyostelium discoideum cDNA clone:dds15g24, 5' ... 674 0.0 3
(BJ390996) Dictyostelium discoideum cDNA clone:dds14g14, 5' ... 674 0.0 3
(BJ325828) Dictyostelium discoideum cDNA clone:dda2c14, 5' e... 674 0.0 3
dna update 2009. 4.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q75JQ1) RecName: Full=Aspartyl-tRNA synthetase, cytoplasmic 1; ... 208 9e-53
(Q559M9) RecName: Full=Aspartyl-tRNA synthetase, cytoplasmic 2; ... 91 6e-18
AC116963_80(AC116963|pid:none) Dictyostelium discoideum chromoso... 89 2e-17
AM494967_54(AM494967|pid:none) Leishmania braziliensis chromosom... 80 3e-14
AC013353_41(AC013353|pid:none) Trypanosoma brucei chromosome 6 c... 76 5e-13
AM502248_79(AM502248|pid:none) Leishmania infantum chromosome 30. 75 9e-13
CT005267_47(CT005267|pid:none) Leishmania major strain Friedlin,... 75 9e-13
(Q03577) RecName: Full=Aspartyl-tRNA synthetase, cytoplasmic; ... 68 6e-12
(O74407) RecName: Full=Aspartyl-tRNA synthetase, cytoplasmic; ... 70 5e-11
(Q3SYZ4) RecName: Full=Aspartyl-tRNA synthetase, cytoplasmic; ... 70 5e-11
protein update 2009. 4. 6
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM880 is

5' end seq. ID AFM880F
5' end seq.
>AFM880F.Seq
ACTTTTACTTAAATAATTTCCAAAATGTCAGAAACTACACCAGTTCCTGTTGGCGAAGCA
GGTGAAAAAAGTGCTACAGCATTAAAAAAAGAACAAAAGAAATTAGAAAAAGAGAAAAAG
ATAGCAGAAGCTAAAGCAAAGAAAGCCGCTGAGAAATCAGCAGCAAGTGGTAATAGTGGT
GAACAAAAGAATGAAAAGAAACAAGAACAAGTTGAAGAGAATAATAGTAATTGGGGTGAA
TTACCAATGAATCAAAGTAAAGAAAAGATTACAAGAGAATGGACAGATGTATCACAATTG
ACAGAATCATTAGTTGGTAAATCAGTATTAATTCGTGCACGTCTTTCAACAAGTCGTTTA
CAAGGTGCCAATCTTTGTTTTGTACAATTAAGAGATGGTTTATATACAGTTCAAGCAGTT
GTTGCCAAAGGTGGATCCAACTCGAAATCAATGGTGCAATTTGTTGGACAAGTTCCAAAG
GAATCCATTGTTGACGTTCAAGCAACCCGTTGTCTCAACCAGTGTACCAATTGAAAGTTG
TACACAAAAATCCGTAGAAXXXXXXXXXX
Length of 5' end seq. 569
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -