VFL223
Library VF
(Link to library)
Clone ID VFL223
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFL223 (VFL223Q) /CSM/VF/VFL2-A/VFL223Q.Seq.d/
ATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTA
TTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTA
TTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAAC
GTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTTG
ATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAAC
ATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCA
AAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGA
AAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAG
CTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAA
ATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGA
AAGGTTCTGGTGAAAAGAATATTTTAATTTTCGATTTAXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
c*nksky*iiky*KMSSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTER
LIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFK
GETKVFSPEEISSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKLN
VQRIINEPTAAAIAYGLEKKGSGEKNILIFD---


Translated Amino Acid sequence (All Frames)
Frame A:
ivkirvnik*lnikkchqlvli*vqhihvlvfgkmivlkllqmikvieplhlmlhlliqn
v*lvmlqriklq*iqpiqylmlnv*lvvnlvtkkfkvi*nighsklfqrmvishifklns
kvklkfshqkkslqwys*k*kkplklilvkpliml*lpfqlismivnvkqpkmlvqfqn*
mfnvllmnqllllllmv*krkvlvkrif*fsi---


Frame B:
llk*e*ilnn*ilknvinwy*frynifmcwclak*sc*nyck*sr**nhsilcciy*yrt
fnw*cckesscnesnqysi*c*tfnws*i**qrssk*yetlaiqsyskgw**atyss*iq
r*n*sfltrrnlfngtlknernr*slsw*nh**ccnyrsslfq**stssnqrcwynfkik
cstyy**tncccyclwfrkerfw*keyfnfrf---


Frame C:
c*nksky*iiky*KMSSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTER
LIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFK
GETKVFSPEEISSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKLN
VQRIINEPTAAAIAYGLEKKGSGEKNILIFD---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL223 (VFL223Q) /CSM/VF/VFL2-A/VFL223Q.Seq.d/ 1174 0.0
VFL101 (VFL101Q) /CSM/VF/VFL1-A/VFL101Q.Seq.d/ 1174 0.0
VFD486 (VFD486Q) /CSM/VF/VFD4-D/VFD486Q.Seq.d/ 1174 0.0
VFB580 (VFB580Q) /CSM/VF/VFB5-D/VFB580Q.Seq.d/ 1174 0.0
VFA447 (VFA447Q) /CSM/VF/VFA4-B/VFA447Q.Seq.d/ 1174 0.0
SFD523 (SFD523Q) /CSM/SF/SFD5-A/SFD523Q.Seq.d/ 1174 0.0
CFF609 (CFF609Q) /CSM/CF/CFF6-A/CFF609Q.Seq.d/ 1174 0.0
CFA811 (CFA811Q) /CSM/CF/CFA8-A/CFA811Q.Seq.d/ 1174 0.0
AFF156 (AFF156Q) /CSM/AF/AFF1-C/AFF156Q.Seq.d/ 1174 0.0
SFE611 (SFE611Q) /CSM/SF/SFE6-A/SFE611Q.Seq.d/ 1172 0.0

own update 2001.12. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ415625) Dictyostelium discoideum cDNA clone:ddv23m06, 5' ... 1174 0.0 1
(BJ415563) Dictyostelium discoideum cDNA clone:ddv23a01, 5' ... 1174 0.0 1
(BJ412323) Dictyostelium discoideum cDNA clone:ddv7l22, 5' e... 1174 0.0 1
(BJ411569) Dictyostelium discoideum cDNA clone:ddv4o19, 5' e... 1174 0.0 1
(BJ410672) Dictyostelium discoideum cDNA clone:ddv1n12, 5' e... 1174 0.0 1
(BJ388155) Dictyostelium discoideum cDNA clone:dds8m05, 5' e... 1174 0.0 1
(BJ359708) Dictyostelium discoideum cDNA clone:ddc2f04, 5' e... 1174 0.0 1
(BJ358935) Dictyostelium discoideum cDNA clone:ddc12a04, 5' ... 1174 0.0 1
(BJ323671) Dictyostelium discoideum cDNA clone:dda11o13, 5' ... 1174 0.0 1
(BJ386674) Dictyostelium discoideum cDNA clone:dds10e04, 5' ... 1172 0.0 1
dna update 2009. 3. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 389 e-107
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 387 e-106
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 362 5e-99
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 362 5e-99
U71151_1(U71151|pid:none) Pneumocystis carinii heat shock protei... 338 1e-91
U80967_1(U80967|pid:none) Pneumocystis carinii f. sp. carinii he... 338 1e-91
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3; 337 2e-91
(P41753) RecName: Full=Heat shock 70 kDa protein; &A53163(A5316... 330 2e-89
EU679414_1(EU679414|pid:none) Tetranychus cinnabarinus heat shoc... 330 2e-89
AY147871_1(AY147871|pid:none) Rhizopus stolonifer 70 kDa heat sh... 330 3e-89
protein update 2009. 6.23
PSORT

psg: 0.87 gvh: 0.35 alm: 0.46 top: 0.27 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFL223 is cyt

5' end seq. ID VFL223F
5' end seq.
>VFL223F.Seq
ATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTA
TTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTA
TTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAAC
GTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTTG
ATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAAC
ATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCA
AAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGA
AAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAG
CTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAA
ATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGA
AAGGTTCTGGTGAAAAGAATATTTTAATTTTCGATTTANNNNNNNNNN
Length of 5' end seq. 648
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -