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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFL193
Library VF
(Link to library)
Clone ID VFL193
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14990-1
Original site URL
Representative seq. ID VFL193P
(Link to Original site)
Representative DNA sequence 
>VFL193 (VFL193Q) /CSM/VF/VFL1-D/VFL193Q.Seq.d/
TGGCCTACTGGAAAAACATTTAAAAAAAAGTAAGAAAATTAATATTAAACAAATATAAAA
ATAAAAATGTCAGGTTGTGGAAATGGTAGTGATAATTTAGAAGATATTGGCAATAATTTT
AAAAAAGTTGTTGTTCAACCACCAAAAAAAACAACTTCAATTATAATACAACAAGATTCT
GATGATTCTCAAACAATAACATCATCATTAAAGCCAAAATCCACTTGTTGCAGTGCTGGT
GAAAATAAATCATCATCATCATCATCATGTTGTAGTAGTAGTAATAAAGTTGAAGAAAAA
CAAAAATCAAGTTGTTGTAGTGGTGGTGAAAGTAAATCATCATCATCATGTTGTAGTGGT
AATAATAATAAATTTGAAGAAAAACAAAAATCAAGTTGTTGTGGAGGAAATGAAAATAAA
TCATCATCTTCATGTTGTAGTAGTAATAATAATAATAAAGTTGAAGAAAAACAAAAATCA
GGTTGTTGTGGAGGTAGTGAAAAAAGTGGATCATCATCATGTTGTAAATCAGAATCAACG
ACAACAACAACAACAACAAATAAACAAATAAAAGATGATTCAAATATTTTATCAAGTGGX
XXXXXXXXXGTCAATTCCAAAGCTAATGGGTGTTGATAAATTGCAAATTATAAATTCAGA
GTATGGTTGGATTCCACCAAAGGTGCAACAAGCAAATCATGATATTAAAGTCATGTCTGT
TGGTTTTTTATTGGGTACCCCTGATGCACCTGTAATTTGGAAAGGTCCAAGAAAGACCAC
AATGATTCGTAGATTCCTTAAAGATACATTTTGGGGTAAACAAGATTATCTCATCATCGA
TACGCCACCAGGCACAAGTGATGAACATCTCTCCATTATCAATTCTCTAAAATCTTGTAA
TCCCGATGGTGCAGTATTGGTCACCACTCCACAAGATCTCTCTTGTGATACTGTAAAAAA
AGAGATTTCATTATGTCGTCAATTAAATGTACCAATCATAGGTATCATTGAAAATTTATC
TGGTTTTGTATGTCCATGTTGTGATGAAGTAACAGAAATTTTCAAATCTGATGGTGGTAA
AAAGTTGGCAGAACAATTTAATATTCCATTCCTTGGCAAAATTCCAATAGATACAAATTT
AGGTAAATCAGCTGAAAATGGGGTTTGTTCAATTTGTGATCATCCAAATACTCCTGGTAC
TTTAGCAATTCATTCAATTATTTATAAAATNATCAAATAATAANTAAAATAAAAAAAAAC
sequence update 2001.11.22
Translated Amino Acid sequence 
wptgktfkkk*en*y*TNIKIKMSGCGNGSDNLEDIGNNFKKVVVQPPKKTTSIIIQQDS
DDSQTITSSLKPKSTCCSAGENKSSSSSSCCSSSNKVEEKQKSSCCSGGESKSSSSCCSG
NNNKFEEKQKSSCCGGNENKSSSSCCSSNNNNKVEEKQKSGCCGGSEKSGSSSCCKSEST
TTTTTTNKQIKDDSNILSS---

---SIPKLMGVDKLQIINSEYGWIPPKVQQANHDIKVMSVGFLLGTPDAPVIWKGPRKTT
MIRRFLKDTFWGKQDYLIIDTPPGTSDEHLSIINSLKSCNPDGAVLVTTPQDLSCDTVKK
EISLCRQLNVPIIGIIENLSGFVCPCCDEVTEIFKSDGGKKLAEQFNIPFLGKIPIDTNL
GKSAENGVCSICDHPNTPGTLAIHSIIYKXIK**xk*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgktfkkk*en*y*TNIKIKMSGCGNGSDNLEDIGNNFKKVVVQPPKKTTSIIIQQDS
DDSQTITSSLKPKSTCCSAGENKSSSSSSCCSSSNKVEEKQKSSCCSGGESKSSSSCCSG
NNNKFEEKQKSSCCGGNENKSSSSCCSSNNNNKVEEKQKSGCCGGSEKSGSSSCCKSEST
TTTTTTNKQIKDDSNILSS---

---vnskangc**ianykfrvwldstkgatsks*y*shvcwffigyp*ctcnlerskkdh
nds*ip*ryilg*trlshhryatrhk**tslhyqfskil*srwcsighhstrsll*yckk
rdfimssikctnhryh*kfiwfcmsml**snrnfqi*ww*kvgrti*ysipwqnsnrykf
r*is*kwglfnl*sskyswyfsnsfnyl*nxqiixkikkn

Frame B:
gllekhlkkskkinikqi*k*kcqvvemvvii*kilaiilkkllfnhqkkqlql*ynkil
milkq*hhh*sqnplvavlvkinhhhhhhvvvvviklkknknqvvvvvvkvnhhhhvvvv
iiinlkknknqvvveemkinhhlhvvvviiiiklkknknqvvvevvkkvdhhhvvnqnqr
qqqqqqink*kmiqifyqv---

---SIPKLMGVDKLQIINSEYGWIPPKVQQANHDIKVMSVGFLLGTPDAPVIWKGPRKTT
MIRRFLKDTFWGKQDYLIIDTPPGTSDEHLSIINSLKSCNPDGAVLVTTPQDLSCDTVKK
EISLCRQLNVPIIGIIENLSGFVCPCCDEVTEIFKSDGGKKLAEQFNIPFLGKIPIDTNL
GKSAENGVCSICDHPNTPGTLAIHSIIYKXIK**xk*kk

Frame C:
aywkni*kkvrklilnkyknknvrlwkw***frrywq*f*ksccsttkknnfnynttrf*
*fsnnniiikakihllqcw*k*iiiiiiml*****s*rktkikll*ww*k*iiiiml*w*
***i*rktkikllwrk*k*iiifml*******s*rktkirllwr**kkwiiiml*irind
nnnnnk*tnkr*fkyfikw---

---qfqs*wvlinckl*iqsmvgfhqrcnkqimilkscllvfywvplmhl*fgkvqerpq
*fvdslkihfgvnkiisssirhqaqvmnisplsil*nlvipmvqywsplhkislvil*kk
rfhyvvn*myqs*vslkiylvlyvhvvmk*qkfsnlmvvkswqnnlifhslakfq*iqi*
vnqlkmgfvqfviiqillvl*qfiqlfikxsnnx*nkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL193 (VFL193Q) /CSM/VF/VFL1-D/VFL193Q.Seq.d/                       1257   0.0
AFH258 (AFH258Q) /CSM/AF/AFH2-C/AFH258Q.Seq.d/                       1217   0.0
AFH315 (AFH315Q) /CSM/AF/AFH3-A/AFH315Q.Seq.d/                       1195   0.0
VFC456 (VFC456Q) /CSM/VF/VFC4-C/VFC456Q.Seq.d/                       1162   0.0
AFH252 (AFH252Q) /CSM/AF/AFH2-C/AFH252Q.Seq.d/                       1074   0.0
VSC152 (VSC152Q) /CSM/VS/VSC1-C/VSC152Q.Seq.d/                         50   8e-05
VHH281 (VHH281Q) /CSM/VH/VHH2-D/VHH281Q.Seq.d/                         50   8e-05
SSE358 (SSE358Q) /CSM/SS/SSE3-C/SSE358Q.Seq.d/                         50   8e-05
SSD430 (SSD430Q) /CSM/SS/SSD4-B/SSD430Q.Seq.d/                         50   8e-05
SFL154 (SFL154Q) /CSM/SF/SFL1-C/SFL154Q.Seq.d/                         50   8e-05
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ434090) Dictyostelium discoideum cDNA clone:ddv23i23, 3' ...   682   0.0    2
(BJ430004) Dictyostelium discoideum cDNA clone:ddv5p14, 3' e...   682   0.0    3
(BJ342942) Dictyostelium discoideum cDNA clone:dda15c16, 3' ...   682   0.0    2
(BJ342862) Dictyostelium discoideum cDNA clone:dda15n03, 3' ...   682   0.0    3
(BJ342958) Dictyostelium discoideum cDNA clone:dda15g14, 3' ...   555   0.0    2
(BJ415823) Dictyostelium discoideum cDNA clone:ddv23i23, 5' ...   539   0.0    4
(BJ326175) Dictyostelium discoideum cDNA clone:dda15g14, 5' ...   539   0.0    4
(BJ326163) Dictyostelium discoideum cDNA clone:dda15c16, 5' ...   539   0.0    4
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    42   1e-06  5
(FH267187) CHO_OF4136xi16r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7e-06  4
dna update 2009. 3. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NZ7) RecName: Full=Nucleotide-binding protein 2 homolog;    ...   227   8e-58
BC064668_1(BC064668|pid:none) Danio rerio nucleotide binding pro...   220   9e-56
BC093447_1(BC093447|pid:none) Danio rerio nucleotide binding pro...   220   9e-56
BC088708_1(BC088708|pid:none) Xenopus laevis hypothetical LOC496...   217   8e-55
AK223204_1(AK223204|pid:none) Homo sapiens mRNA for nucleotide b...   215   2e-54
BC109323_1(BC109323|pid:none) Homo sapiens nucleotide binding pr...   215   2e-54
BC094205_1(BC094205|pid:none) Xenopus laevis hypothetical LOC494...   215   2e-54
BC090123_1(BC090123|pid:none) Xenopus tropicalis MGC97800 protei...   215   3e-54
BC106243_1(BC106243|pid:none) Xenopus laevis hypothetical LOC494...   214   4e-54
(P53384) RecName: Full=Nucleotide-binding protein 1;          Sh...   213   9e-54
protein update 2009. 6.23
PSORT 

 psg: 0.80  gvh: 0.38  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFL193 is cyt
5' end seq. ID VFL193F
5' end seq. 
>VFL193F.Seq
TGGCCTACTGGAAAAACATTTAAAAAAAAGTAAGAAAATTAATATTAAACAAATATAAAA
ATAAAAATGTCAGGTTGTGGAAATGGTAGTGATAATTTAGAAGATATTGGCAATAATTTT
AAAAAAGTTGTTGTTCAACCACCAAAAAAAACAACTTCAATTATAATACAACAAGATTCT
GATGATTCTCAAACAATAACATCATCATTAAAGCCAAAATCCACTTGTTGCAGTGCTGGT
GAAAATAAATCATCATCATCATCATCATGTTGTAGTAGTAGTAATAAAGTTGAAGAAAAA
CAAAAATCAAGTTGTTGTAGTGGTGGTGAAAGTAAATCATCATCATCATGTTGTAGTGGT
AATAATAATAAATTTGAAGAAAAACAAAAATCAAGTTGTTGTGGAGGAAATGAAAATAAA
TCATCATCTTCATGTTGTAGTAGTAATAATAATAATAAAGTTGAAGAAAAACAAAAATCA
GGTTGTTGTGGAGGTAGTGAAAAAAGTGGATCATCATCATGTTGTAAATCAGAATCAACG
ACAACAACAACAACAACAAATAAACAAATAAAAGATGATTCAAATATTTTATCAAGTGGN
NNNNNNNNN
Length of 5' end seq. 609
3' end seq. ID VFL193Z
3' end seq. 
>VFL193Z.Seq
NNNNNNNNNNGTCAATTCCAAAGCTAATGGGTGTTGATAAATTGCAAATTATAAATTCAG
AGTATGGTTGGATTCCACCAAAGGTGCAACAAGCAAATCATGATATTAAAGTCATGTCTG
TTGGTTTTTTATTGGGTACCCCTGATGCACCTGTAATTTGGAAAGGTCCAAGAAAGACCA
CAATGATTCGTAGATTCCTTAAAGATACATTTTGGGGTAAACAAGATTATCTCATCATCG
ATACGCCACCAGGCACAAGTGATGAACATCTCTCCATTATCAATTCTCTAAAATCTTGTA
ATCCCGATGGTGCAGTATTGGTCACCACTCCACAAGATCTCTCTTGTGATACTGTAAAAA
AAGAGATTTCATTATGTCGTCAATTAAATGTACCAATCATAGGTATCATTGAAAATTTAT
CTGGTTTTGTATGTCCATGTTGTGATGAAGTAACAGAAATTTTCAAATCTGATGGTGGTA
AAAAGTTGGCAGAACAATTTAATATTCCATTCCTTGGCAAAATTCCAATAGATACAAATT
TAGGTAAATCAGCTGAAAATGGGGTTTGTTCAATTTGTGATCATCCAAATACTCCTGGTA
CTTTAGCAATTCATTCAATTATTTATAAAATNATCAAATAATAANTAAAATAAAAAAAAA
C
Length of 3' end seq. 661
Connected seq. ID VFL193P
Connected seq. 
>VFL193P.Seq
TGGCCTACTGGAAAAACATTTAAAAAAAAGTAAGAAAATTAATATTAAACAAATATAAAA
ATAAAAATGTCAGGTTGTGGAAATGGTAGTGATAATTTAGAAGATATTGGCAATAATTTT
AAAAAAGTTGTTGTTCAACCACCAAAAAAAACAACTTCAATTATAATACAACAAGATTCT
GATGATTCTCAAACAATAACATCATCATTAAAGCCAAAATCCACTTGTTGCAGTGCTGGT
GAAAATAAATCATCATCATCATCATCATGTTGTAGTAGTAGTAATAAAGTTGAAGAAAAA
CAAAAATCAAGTTGTTGTAGTGGTGGTGAAAGTAAATCATCATCATCATGTTGTAGTGGT
AATAATAATAAATTTGAAGAAAAACAAAAATCAAGTTGTTGTGGAGGAAATGAAAATAAA
TCATCATCTTCATGTTGTAGTAGTAATAATAATAATAAAGTTGAAGAAAAACAAAAATCA
GGTTGTTGTGGAGGTAGTGAAAAAAGTGGATCATCATCATGTTGTAAATCAGAATCAACG
ACAACAACAACAACAACAAATAAACAAATAAAAGATGATTCAAATATTTTATCAAGTGG-
---------GTCAATTCCAAAGCTAATGGGTGTTGATAAATTGCAAATTATAAATTCAGA
GTATGGTTGGATTCCACCAAAGGTGCAACAAGCAAATCATGATATTAAAGTCATGTCTGT
TGGTTTTTTATTGGGTACCCCTGATGCACCTGTAATTTGGAAAGGTCCAAGAAAGACCAC
AATGATTCGTAGATTCCTTAAAGATACATTTTGGGGTAAACAAGATTATCTCATCATCGA
TACGCCACCAGGCACAAGTGATGAACATCTCTCCATTATCAATTCTCTAAAATCTTGTAA
TCCCGATGGTGCAGTATTGGTCACCACTCCACAAGATCTCTCTTGTGATACTGTAAAAAA
AGAGATTTCATTATGTCGTCAATTAAATGTACCAATCATAGGTATCATTGAAAATTTATC
TGGTTTTGTATGTCCATGTTGTGATGAAGTAACAGAAATTTTCAAATCTGATGGTGGTAA
AAAGTTGGCAGAACAATTTAATATTCCATTCCTTGGCAAAATTCCAATAGATACAAATTT
AGGTAAATCAGCTGAAAATGGGGTTTGTTCAATTTGTGATCATCCAAATACTCCTGGTAC
TTTAGCAATTCATTCAATTATTTATAAAATNATCAAATAATAANTAAAATAAAAAAAAAC
Length of connected seq. 1250
Full length Seq ID -
Full length Seq. -
Length of full length seq. -