VFL191
Library VF
(Link to library)
Clone ID VFL191
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12252-1
Original site URL
Representative seq. ID VFL191P
(Link to Original site)
Representative DNA sequence
>VFL191 (VFL191Q) /CSM/VF/VFL1-D/VFL191Q.Seq.d/
CACTGTTGGCCTCTGGAAAATATATCAATTTTTTTTATTATTACTTTTTTTATTTTTATT
TTTATATATTTTTTTTATTTTGNGCCAATTGTATAAACCAATCAATTTTAAAAAAAAGAA
TAATAAAGAAAAATAAAGAAAAATCAAAATATATAAATAATAATAATAATAAAAAAACAA
TCAACAAACAAAAAAAAAAXXXXXXXXXXTTTGTAGATAGAGGATTTTATTCAGTAGAGA
CATTTTTATTATTGTTGGCATTAAAAGTTAGATACCCAGATAGAATTACATTGATTCGTG
GTAACCATGAATCTAGACAAATCACTCAAGTCTATGGTTTCTATGAAGAATGCGTTAGAA
AGTATGGTAGTGTTACAGTTTGGAAATATTGTACAGAGATTTTCGATTATCTCTCACTTT
CTGCTTTAGTTGATGGTAAAATATTTTGTGTTCATGGTGGTTTATCTCCATCAATTAATA
CTTTAGGNNCNCNNTTAGGGCAATTGATAGAAANCAAGNAGTGCCACATNAAGGNCCAAT
GTGTGATTTAATGTGGTCAGATCCAGAGGATATACCAGNATGGAATGGTAGTCCAAGAGG
TGCAGGTTTCCTATTTGGTGAAGATGTCGTTCAAAAGTTTA
sequence update 2001.11.22
Translated Amino Acid sequence
LLASGKYINFFYYYFFYFYFYIFFLFXANCINQSILKKRIIKKNKEKSKYINNNNNKKTI
NKQKK---

---FVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYEECVRKYGSVTV
WKYCTEIFDYLSLSALVDGKIFCVHGGLSPSINTLGXXLGQLIEXKXCHXKXQCVI*cgq
iqriyqxgmvvqevqvsylvkmsfksl


Translated Amino Acid sequence (All Frames)
Frame A:
hcwplenisiffiitffififiyffyfxpiv*tnqf*kke**rkikknqni*iiiiikkq
stnkkk---

---FVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYEECVRKYGSVTV
WKYCTEIFDYLSLSALVDGKIFCVHGGLSPSINTLGXXLGQLIEXKXCHXKXQCVI*cgq
iqriyqxgmvvqevqvsylvkmsfksl

Frame B:
tvglwkiyqffllllflflflyiffilxqlykpinfkkknnkek*rkikiyk*****knn
qqtkkk---

---l*iedfiq*rhfyycwh*kldtqielh*fvvtmnldkslksmvsmknalesmvvlqf
gnivqrfsiishfll*lmvkyfvfmvvylhqlil*xxx*gn**kxxsatxrxnv*fnvvr
srgytxmew*skrcrfpiw*rcrskv

Frame C:
LLASGKYINFFYYYFFYFYFYIFFLFXANCINQSILKKRIIKKNKEKSKYINNNNNKKTI
NKQKK---

---cr*rilfsrdifiivgiks*ipr*nyidsw*p*i*tnhsslwfl*rmr*kvw*cysl
eilyrdfrlsltfcfs*w*nilcswwfisin*yfrxxxraidrxqxvphxgpmcdlmwsd
pedipxwngsprgagflfgedvvqkf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL191 (VFL191Q) /CSM/VF/VFL1-D/VFL191Q.Seq.d/ 797 0.0
VFO716 (VFO716Q) /CSM/VF/VFO7-A/VFO716Q.Seq.d/ 741 0.0
VFA846 (VFA846Q) /CSM/VF/VFA8-B/VFA846Q.Seq.d/ 729 0.0
AFH141 (AFH141Q) /CSM/AF/AFH1-B/AFH141Q.Seq.d/ 702 0.0
VFJ734 (VFJ734Q) /CSM/VF/VFJ7-B/VFJ734Q.Seq.d/ 698 0.0
SSM349 (SSM349Q) /CSM/SS/SSM3-C/SSM349Q.Seq.d/ 601 e-171
SFG446 (SFG446Q) /CSM/SF/SFG4-B/SFG446Q.Seq.d/ 597 e-170
SFB141 (SFB141Q) /CSM/SF/SFB1-B/SFB141Q.Seq.d/ 581 e-165
SFF476 (SFF476Q) /CSM/SF/SFF4-D/SFF476Q.Seq.d/ 515 e-145
SSB632 (SSB632Q) /CSM/SS/SSB6-B/SSB632Q.Seq.d/ 509 e-143

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ434067) Dictyostelium discoideum cDNA clone:ddv23e23, 3' ... 797 0.0 1
(AF161253) Dictyostelium discoideum protein phosphatase 4 ca... 549 0.0 3
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 549 0.0 3
(BJ436169) Dictyostelium discoideum cDNA clone:ddv30p03, 3' ... 541 0.0 2
(BJ429114) Dictyostelium discoideum cDNA clone:ddv2l12, 3' e... 549 0.0 2
(BJ432932) Dictyostelium discoideum cDNA clone:ddv20d09, 3' ... 545 0.0 2
(BJ342876) Dictyostelium discoideum cDNA clone:dda15a11, 3' ... 515 0.0 2
(AU039075) Dictyostelium discoideum slug cDNA, clone SSM349. 400 e-175 2
(BJ400468) Dictyostelium discoideum cDNA clone:dds13l12, 3' ... 541 e-173 2
(BJ398937) Dictyostelium discoideum cDNA clone:dds3a11, 3' e... 549 e-169 2
dna update 2009. 3. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P11084) RecName: Full=Serine/threonine-protein phosphatase 4 ca... 184 6e-63
(A6H772) RecName: Full=Serine/threonine-protein phosphatase 4 ca... 184 6e-63
S28173(S28173)phosphoprotein phosphatase (EC 3.1.3.16) X catalyt... 184 6e-63
AF005884_1(AF005884|pid:none) Fugu rubripes serine/threonine pho... 184 6e-63
(A9JRC7) RecName: Full=Serine/threonine-protein phosphatase 4 ca... 184 6e-63
(Q6IP91) RecName: Full=Serine/threonine-protein phosphatase 4 ca... 184 6e-63
BT078721_1(BT078721|pid:none) Lepeophtheirus salmonis clone lsal... 179 3e-61
BC049430_1(BC049430|pid:none) Danio rerio protein phosphatase 4 ... 178 4e-61
U79747_1(U79747|pid:none) Mus musculus protein phosphatase X hom... 174 8e-60
(P48528) RecName: Full=Serine/threonine-protein phosphatase PP-X... 177 1e-58
protein update 2009. 6.23
PSORT

psg: 0.96 gvh: 0.56 alm: 0.34 top: 0.87 tms: 0.00 mit: 0.31 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
24.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: extracellular, including cell wall
8.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for VFL191 is mit

5' end seq. ID VFL191F
5' end seq.
>VFL191F.Seq
CACTGTTGGCCTCTGGAAAATATATCAATTTTTTTTATTATTACTTTTTTTATTTTTATT
TTTATATATTTTTTTTATTTTGNGCCAATTGTATAAACCAATCAATTTTAAAAAAAAGAA
TAATAAAGAAAAATAAAGAAAAATCAAAATATATAAATAATAATAATAATAAAAAAACAA
TCAACAAACAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 209
3' end seq. ID VFL191Z
3' end seq.
>VFL191Z.Seq
NNNNNNNNNNTTTGTAGATAGAGGATTTTATTCAGTAGAGACATTTTTATTATTGTTGGC
ATTAAAAGTTAGATACCCAGATAGAATTACATTGATTCGTGGTAACCATGAATCTAGACA
AATCACTCAAGTCTATGGTTTCTATGAAGAATGCGTTAGAAAGTATGGTAGTGTTACAGT
TTGGAAATATTGTACAGAGATTTTCGATTATCTCTCACTTTCTGCTTTAGTTGATGGTAA
AATATTTTGTGTTCATGGTGGTTTATCTCCATCAATTAATACTTTAGGNNCNCNNTTAGG
GCAATTGATAGAAANCAAGNAGTGCCACATNAAGGNCCAATGTGTGATTTAATGTGGTCA
GATCCAGAGGATATACCAGNATGGAATGGTAGTCCAAGAGGTGCAGGTTTCCTATTTGGT
GAAGATGTCGTTCAAAAGTTTA
Length of 3' end seq. 442
Connected seq. ID VFL191P
Connected seq.
>VFL191P.Seq
CACTGTTGGCCTCTGGAAAATATATCAATTTTTTTTATTATTACTTTTTTTATTTTTATT
TTTATATATTTTTTTTATTTTGNGCCAATTGTATAAACCAATCAATTTTAAAAAAAAGAA
TAATAAAGAAAAATAAAGAAAAATCAAAATATATAAATAATAATAATAATAAAAAAACAA
TCAACAAACAAAAAAAAAA----------TTTGTAGATAGAGGATTTTATTCAGTAGAGA
CATTTTTATTATTGTTGGCATTAAAAGTTAGATACCCAGATAGAATTACATTGATTCGTG
GTAACCATGAATCTAGACAAATCACTCAAGTCTATGGTTTCTATGAAGAATGCGTTAGAA
AGTATGGTAGTGTTACAGTTTGGAAATATTGTACAGAGATTTTCGATTATCTCTCACTTT
CTGCTTTAGTTGATGGTAAAATATTTTGTGTTCATGGTGGTTTATCTCCATCAATTAATA
CTTTAGGNNCNCNNTTAGGGCAATTGATAGAAANCAAGNAGTGCCACATNAAGGNCCAAT
GTGTGATTTAATGTGGTCAGATCCAGAGGATATACCAGNATGGAATGGTAGTCCAAGAGG
TGCAGGTTTCCTATTTGGTGAAGATGTCGTTCAAAAGTTTA
Length of connected seq. 631
Full length Seq ID -
Full length Seq. -
Length of full length seq. -