>VFL189 (VFL189Q) /CSM/VF/VFL1-D/VFL189Q.Seq.d/
XXXXXXXXXXTACAACAGTACCATATAAATTAATTATTTTAGATGAAGCAGATTCAATGA
CAAATATTGCACAAACAGCATTAAGAAGAGTAATTGAAAAGTATACAAAAACAACTAGAT
TTTGTATAGTTTGTAATTATGTTATTAAAATTATACCTGCTTTACAATCAAGATGTACAA
GATTTAGATTTAGTCCATTACCAACTCCACCAACTGAAATTAGATTAAAAGAAATTATTG
AAAAGGAAAATGTTAAAGTTGATAGTAAAGCAATGAATGCAGTATTAGAATTAGTATGTG
GTGATATGAGAAAATGTTTAAATATATTACAATCAGTATCAATGTCTTCAATAGATAACA
ACATTACAGAAGAAGCAATCTATAAATGTACAGGTTATCCAATGCCATCTGATATTGAAT
TGATGGTTGATTGGTTATTAAATAGTGATTACGAAGAAGCTTTTCAAAATATTAGTGATT
TAAAAAAGAAAAAAGGTTTATCATTGAATGATATCATCGCAACACTTCAAAAATTCGTCG
TTCAAATTGATTTGGATAATGTTATCCTTTGTAAATTATTATCTCATTTATCAGATATCG
AATA

---TTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTR
FRFSPLPTPPTEIRLKEIIEKENVKVDSKAMNAVLELVCGDMRKCLNILQSVSMSSIDNN
ITEEAIYKCTGYPMPSDIELMVDWLLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVV
QIDLDNVILCKLLSHLSDIE

Frame A:
---TTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTR
FRFSPLPTPPTEIRLKEIIEKENVKVDSKAMNAVLELVCGDMRKCLNILQSVSMSSIDNN
ITEEAIYKCTGYPMPSDIELMVDWLLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVV
QIDLDNVILCKLLSHLSDIE


Frame B:
---qqyhin*lf*mkqiq*qilhkqh*ee*lksiqkqldfv*fvimllklyllynqdvqd
ldlvhyqlhqlkld*kkllkrkmlklivkq*mqy*n*yvvi*env*iyynqyqclq*itt
lqkkqsinvqviqchliln*wligy*ivitkklfkilvi*krkkvyh*missqhfknssf
kliwimlsfvnyyliyqisn


Frame C:
---nsti*inyfr*srfndkyctnsikksn*kvyknn*ilysl*lcy*nytcftikmyki
*i*sitnstn*n*ikrny*kgkc*s***snecsirismw*yekmfkyitisinvfnr*qh
yrrsnl*myrlsnai*y*idg*lvik**lrrsfsky**fkkekrfiie*yhrntskirrs
n*fg*cypl*iiisfiryri

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL189 (VFL189Q) /CSM/VF/VFL1-D/VFL189Q.Seq.d/                        934   0.0
AFO727 (AFO727Q) /CSM/AF/AFO7-B/AFO727Q.Seq.d/                        918   0.0
VFO860 (VFO860Q) /CSM/VF/VFO8-C/VFO860Q.Seq.d/                        914   0.0
SFA123 (SFA123Q) /CSM/SF/SFA1-A/SFA123Q.Seq.d/                        753   0.0
SSF722 (SSF722Q) /CSM/SS/SSF7-A/SSF722Q.Seq.d/                        726   0.0
SLE671 (SLE671Q) /CSM/SL/SLE6-C/SLE671Q.Seq.d/                        246   3e-64
VSF738 (VSF738Q) /CSM/VS/VSF7-B/VSF738Q.Seq.d/                         38   0.15
SSJ775 (SSJ775Q) /CSM/SS/SSJ7-D/SSJ775Q.Seq.d/                         38   0.15
SSJ660 (SSJ660Q) /CSM/SS/SSJ6-C/SSJ660Q.Seq.d/                         38   0.15
SSD406 (SSD406Q) /CSM/SS/SSD4-A/SSD406Q.Seq.d/                         38   0.15

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ434045) Dictyostelium discoideum cDNA clone:ddv23a23, 3' ...   934   0.0    2
(BJ436259) Dictyostelium discoideum cDNA clone:ddv30h16, 3' ...   769   0.0    2
(BJ346233) Dictyostelium discoideum cDNA clone:dda30f07, 3' ...   767   0.0    2
(BJ398601) Dictyostelium discoideum cDNA clone:dds1m05, 3' e...   753   0.0    2
(C84780) Dictyostelium discoideum slug cDNA, clone SSF722.        726   0.0    2
(AU034907) Dictyostelium discoideum slug cDNA, clone SLE671.      246   e-120  2
(BJ328973) Dictyostelium discoideum cDNA clone:dda30f07, 5' ...   440   e-119  1
(BJ417430) Dictyostelium discoideum cDNA clone:ddv30h16, 5' ...   420   e-113  1
(BJ387263) Dictyostelium discoideum cDNA clone:dds1m05, 5' e...   240   5e-59  1
(AU061573) Dictyostelium discoideum slug cDNA, clone SLE671.      234   3e-57  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ST4) RecName: Full=Probable replication factor C subunit 5; ...   387   e-106
AB168973_1(AB168973|pid:none) Macaca fascicularis testis cDNA, c...   206   4e-52
AK290685_1(AK290685|pid:none) Homo sapiens cDNA FLJ76127 complet...   206   4e-52
(P40937) RecName: Full=Replication factor C subunit 5; AltName: ...   206   4e-52
EU963750_1(EU963750|pid:none) Zea mays clone 272351 replication ...   205   7e-52
AK291107_1(AK291107|pid:none) Homo sapiens cDNA FLJ77120 complet...   205   7e-52
BC023674_1(BC023674|pid:none) Mus musculus replication factor C ...   205   9e-52
BC168902_1(BC168902|pid:none) Rattus norvegicus replication fact...   205   9e-52
AB038319_1(AB038319|pid:none) Oryza sativa Japonica Group OsRFC3...   200   3e-50
BC044712_1(BC044712|pid:none) Xenopus laevis replication factor ...   196   4e-49

 psg: 0.63  gvh: 0.36  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VFL189 is cyt

>VFL189Z.Seq
NNNNNNNNNNTACAACAGTACCATATAAATTAATTATTTTAGATGAAGCAGATTCAATGA
CAAATATTGCACAAACAGCATTAAGAAGAGTAATTGAAAAGTATACAAAAACAACTAGAT
TTTGTATAGTTTGTAATTATGTTATTAAAATTATACCTGCTTTACAATCAAGATGTACAA
GATTTAGATTTAGTCCATTACCAACTCCACCAACTGAAATTAGATTAAAAGAAATTATTG
AAAAGGAAAATGTTAAAGTTGATAGTAAAGCAATGAATGCAGTATTAGAATTAGTATGTG
GTGATATGAGAAAATGTTTAAATATATTACAATCAGTATCAATGTCTTCAATAGATAACA
ACATTACAGAAGAAGCAATCTATAAATGTACAGGTTATCCAATGCCATCTGATATTGAAT
TGATGGTTGATTGGTTATTAAATAGTGATTACGAAGAAGCTTTTCAAAATATTAGTGATT
TAAAAAAGAAAAAAGGTTTATCATTGAATGATATCATCGCAACACTTCAAAAATTCGTCG
TTCAAATTGATTTGGATAATGTTATCCTTTGTAAATTATTATCTCATTTATCAGATATCG
AATA