VFL175
Library VF
(Link to library)
Clone ID VFL175
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16478-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFL175 (VFL175Q) /CSM/VF/VFL1-D/VFL175Q.Seq.d/
XXXXXXXXXXATGGATAACAAACTCATTCGTACTGTTGTAACTCCAAATGCACAATATGC
CACAAATTAAAACTGCTTATTCAACTCTCTTCAAGAATTTCATAGCTCANAATTCAAGC
sequence update 2001.11.22
Translated Amino Acid sequence
---g*QTHSYCCNSKCTICHKLKLLIQLSSRIS*lxiq


Translated Amino Acid sequence (All Frames)
Frame A:
---witnsfvll*lqmhnmpqiktaystlfknfiaxnss


Frame B:
---g*QTHSYCCNSKCTICHKLKLLIQLSSRIS*lxiq


Frame C:
---dnklirtvvtpnaqyatn*nclfnslqefhssxfk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL175 (VFL175Q) /CSM/VF/VFL1-D/VFL175Q.Seq.d/ 210 3e-54
VFF747 (VFF747Q) /CSM/VF/VFF7-B/VFF747Q.Seq.d/ 159 1e-38
VFA403 (VFA403Q) /CSM/VF/VFA4-A/VFA403Q.Seq.d/ 159 1e-38
VFL886 (VFL886Q) /CSM/VF/VFL8-D/VFL886Q.Seq.d/ 155 2e-37
VFL667 (VFL667Q) /CSM/VF/VFL6-C/VFL667Q.Seq.d/ 155 2e-37
VFL384 (VFL384Q) /CSM/VF/VFL3-D/VFL384Q.Seq.d/ 155 2e-37
VFK891 (VFK891Q) /CSM/VF/VFK8-D/VFK891Q.Seq.d/ 155 2e-37
VFI545 (VFI545Q) /CSM/VF/VFI5-B/VFI545Q.Seq.d/ 155 2e-37
VFH585 (VFH585Q) /CSM/VF/VFH5-D/VFH585Q.Seq.d/ 155 2e-37
VFG525 (VFG525Q) /CSM/VF/VFG5-B/VFG525Q.Seq.d/ 155 2e-37

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ434063) Dictyostelium discoideum cDNA clone:ddv23e19, 3' ... 210 7e-51 1
(X60270) D.discoideum DdANN7 mRNA for annexin VII, partial cds. 109 4e-33 2
(M69022) D.discoideum annexin VII (synexin) mRNA, complete cds. 109 4e-33 2
(BJ434650) Dictyostelium discoideum cDNA clone:ddv24e18, 3' ... 109 4e-33 2
(BJ434435) Dictyostelium discoideum cDNA clone:ddv16i21, 3' ... 109 4e-33 2
(BJ432324) Dictyostelium discoideum cDNA clone:ddv18i11, 3' ... 109 4e-33 2
(AU039987) Dictyostelium discoideum slug cDNA, clone SLH384. 109 4e-33 2
(AU039522) Dictyostelium discoideum slug cDNA, clone SLA785. 109 4e-33 2
(AU039484) Dictyostelium discoideum slug cDNA, clone SLH871. 109 4e-33 2
(AU039440) Dictyostelium discoideum slug cDNA, clone SLH791. 109 4e-33 2
dna update 2009. 3. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P24639) RecName: Full=Annexin A7; AltName: Full=Annexin-7; AltN... 43 2e-04
M69022_1(M69022|pid:none) D.discoideum annexin VII (synexin) mRN... 43 2e-04

protein update 2009. 2.17
PSORT

psg: 0.66 gvh: 0.47 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.47 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: mitochondrial
20.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VFL175 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFL175Z
3' end seq.
>VFL175Z.Seq
NNNNNNNNNNATGGATAACAAACTCATTCGTACTGTTGTAACTCCAAATGCACAATATGC
CACAAATTAAAACTGCTTATTCAACTCTCTTCAAGAATTTCATAGCTCANAATTCAAGC
Length of 3' end seq. 119
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -