VFL172
Library VF
(Link to library)
Clone ID VFL172
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12923-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFL172 (VFL172Q) /CSM/VF/VFL1-C/VFL172Q.Seq.d/
XXXXXXXXXXGAATCAAGGTTTCACCATTGATGATGGTCCACTTCGTAAGTATGATAATC
CAGAGAATAAAGAATTACTCGATGATATTCAAAGGGGTATTGTACCACGTGAACTTCAAA
AAAAAGCAACCACTCCAAATGGTTTATCTGTAACTTTGATAAATAATCATAATCAAGATT
ATGTTGAACCAGCAAAACCAAAATATGTTGCATTCTCTGGTGGTGGTCAAACTTTAGGTA
GTTCTTCCACCTCAACAAATAATAATAATAATAATAATAATAATAACAACAATAGAGCAA
CCACTACTTCAACTACTACAACTTCAACACCAAATGTATCATCAATCAATGTAGATCAAT
CACAACCAACAACAACAGTTCAAATTCGTTTAGCAAATGGTTCAAGACTTTCAACAACCT
TTAATCACTCTCATACCCTTCAAGATGTTATTAATTATATCAATAGCTCAAGTGGTTCAA
ATCAATCTTTTGATCTTTTAACTGGTTTCCCTCAAAAACCAGTCACAAACCCAACTTCAA
CAACTTTAA
sequence update 2001.11.22
Translated Amino Acid sequence
---NQGFTIDDGPLRKYDNPENKELLDDIQRGIVPRELQKKATTPNGLSVTLINNHNQDY
VEPAKPKYVAFSGGGQTLGSSSTSTNNNNNNNNNNNNRATTTSTTTTSTPNVSSINVDQS
QPTTTVQIRLANGSRLSTTFNHSHTLQDVINYINSSSGSNQSFDLLTGFPQKPVTNPTST
TL


Translated Amino Acid sequence (All Frames)
Frame A:
---NQGFTIDDGPLRKYDNPENKELLDDIQRGIVPRELQKKATTPNGLSVTLINNHNQDY
VEPAKPKYVAFSGGGQTLGSSSTSTNNNNNNNNNNNNRATTTSTTTTSTPNVSSINVDQS
QPTTTVQIRLANGSRLSTTFNHSHTLQDVINYINSSSGSNQSFDLLTGFPQKPVTNPTST
TL


Frame B:
---ikvsplmmvhfvsmiiqriknysmifkgvlyhvnfkkkqplqmvyl*l**iiiikim
lnqqnqnmlhslvvvkl*vvlppqqiiiiiiiiittieqpllqllqlqhqmyhqsm*inh
nqqqqfkfv*qmvqdfqqplitlipfkmlliisiaqvvqinllif*lvslknqsqtqlqq
l*


Frame C:
---srfhh**wsts*v**sre*ritr*yskgyctt*tskksnhskwficnfdk*s*srlc
*tsktkiccilwwwsnfr*ffhlnk*********qq*snhyfnyynfntkciinqcrsit
tnnnssnsfskwfktfnnl*slsypsrcy*lyq*lkwfksif*sfnwfpsktshkpnfnn
f


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFM241 (VFM241Q) /CSM/VF/VFM2-B/VFM241Q.Seq.d/ 521 e-147
VFL172 (VFL172Q) /CSM/VF/VFL1-C/VFL172Q.Seq.d/ 521 e-147
SLG641 (SLG641Q) /CSM/SL/SLG6-B/SLG641Q.Seq.d/ 521 e-147
AFI805 (AFI805Q) /CSM/AF/AFI8-A/AFI805Q.Seq.d/ 521 e-147
SFH446 (SFH446Q) /CSM/SF/SFH4-B/SFH446Q.Seq.d/ 505 e-142
AFF640 (AFF640Q) /CSM/AF/AFF6-B/AFF640Q.Seq.d/ 462 e-129
VFL808 (VFL808Q) /CSM/VF/VFL8-A/VFL808Q.Seq.d/ 450 e-125
SSC442 (SSC442Q) /CSM/SS/SSC4-B/SSC442Q.Seq.d/ 48 1e-04
VSI371 (VSI371Q) /CSM/VS/VSI3-C/VSI371Q.Seq.d/ 46 6e-04
AFJ432 (AFJ432Q) /CSM/AF/AFJ4-B/AFJ432Q.Seq.d/ 40 0.035

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ434876) Dictyostelium discoideum cDNA clone:ddv25a12, 3' ... 521 0.0 3
(BJ344319) Dictyostelium discoideum cDNA clone:dda18j02, 3' ... 521 0.0 3
(BJ434034) Dictyostelium discoideum cDNA clone:ddv23o17, 3' ... 521 0.0 3
(AU039878) Dictyostelium discoideum slug cDNA, clone SLG641. 521 0.0 3
(BJ400919) Dictyostelium discoideum cDNA clone:dds15l12, 3' ... 428 0.0 4
(BJ434554) Dictyostelium discoideum cDNA clone:ddv24p02, 3' ... 450 0.0 3
(BJ340286) Dictyostelium discoideum cDNA clone:dda12o10, 3' ... 462 e-126 1
(ER578956) 1093015825933 Global-Ocean-Sampling_GS-36-01-01-2... 54 0.006 1
(AU071748) Dictyostelium discoideum slug cDNA, clone SSC442. 48 0.014 2
(AB047034) Apis mellifera mblk-1 mRNA, complete cds. 48 0.34 1
dna update 2009. 3. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54BQ5) RecName: Full=NSFL1 cofactor p47 homolog; 275 4e-73
DQ440125_1(DQ440125|pid:none) Aedes aegypti clone AE-7835 potein... 110 3e-23
BT065255_1(BT065255|pid:none) Zea mays full-length cDNA clone ZM... 103 4e-21
EU961762_1(EU961762|pid:none) Zea mays clone 238129 unknown mRNA. 98 1e-19
BT080273_1(BT080273|pid:none) Caligus clemensi clone ccle-evs-50... 97 4e-19
EF148025_1(EF148025|pid:none) Populus trichocarpa clone WS0126_O... 96 8e-19
(Q5ZK10) RecName: Full=NSFL1 cofactor p47; AltName: Full=p97 cof... 93 4e-18
DQ214244_1(DQ214244|pid:none) Taeniopygia guttata clone 0058P003... 93 4e-18
EF145028_1(EF145028|pid:none) Populus trichocarpa clone WS0111_J... 93 5e-18
AP007162_472(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 92 7e-18
protein update 2009. 6.23
PSORT

psg: 0.75 gvh: 0.21 alm: 0.59 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VFL172 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFL172Z
3' end seq.
>VFL172Z.Seq
NNNNNNNNNNGAATCAAGGTTTCACCATTGATGATGGTCCACTTCGTAAGTATGATAATC
CAGAGAATAAAGAATTACTCGATGATATTCAAAGGGGTATTGTACCACGTGAACTTCAAA
AAAAAGCAACCACTCCAAATGGTTTATCTGTAACTTTGATAAATAATCATAATCAAGATT
ATGTTGAACCAGCAAAACCAAAATATGTTGCATTCTCTGGTGGTGGTCAAACTTTAGGTA
GTTCTTCCACCTCAACAAATAATAATAATAATAATAATAATAATAACAACAATAGAGCAA
CCACTACTTCAACTACTACAACTTCAACACCAAATGTATCATCAATCAATGTAGATCAAT
CACAACCAACAACAACAGTTCAAATTCGTTTAGCAAATGGTTCAAGACTTTCAACAACCT
TTAATCACTCTCATACCCTTCAAGATGTTATTAATTATATCAATAGCTCAAGTGGTTCAA
ATCAATCTTTTGATCTTTTAACTGGTTTCCCTCAAAAACCAGTCACAAACCCAACTTCAA
CAACTTTAA
Length of 3' end seq. 549
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -