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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFL163
Library VF
(Link to library)
Clone ID VFL163
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/
XXXXXXXXXXTTCCAGCATATACTTCATTAAATTCATCATCCTCATCCACCATCTCAAAG
AGTAATAGCAATCAAAGCCCTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAA
TCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATT
ATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTA
GAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCACCA
CCAGTCTCTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAA
TCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATC
GCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATC
ATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAG
GAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTC
sequence update 2001.11.22
Translated Amino Acid sequence 
---PAYTSLNSSSSSTISKSNSNQSPAKETSSNNLLQYQSPVRVASSTSSENLVDSASIM
NNVDSHTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQS
PFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKE
SANFGMTLSSTTPMSFDI
Translated Amino Acid sequence (All Frames) 
Frame A:
---ssiyfikfiilihhlke**qskpckgnq**qplaisits*ssqlnii*efsr*cfhy
eqr*fsyl*reneargkeirkmgfkd*ltncyltkhylttsl*yhsgctsdsnrtictti
silnwccrlcqsks*qspnryyptip*syrslc*ir*tnhskenl*s*ychlyshgfskg
icklwydslfnypnvfryl


Frame B:
---PAYTSLNSSSSSTISKSNSNQSPAKETSSNNLLQYQSPVRVASSTSSENLVDSASIM
NNVDSHTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQS
PFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKE
SANFGMTLSSTTPMSFDI


Frame C:
---qhilh*ihhphppsqrviaikalqrkpvvttscninhqle*paqhhlri*sivlpl*
ttliliplkrk*skrqrd*kdgv*rlthqllphqalphhqslvplrlhq*lqpnnlyhnl
hsqlvlpslsikviaisqsllpnnslivsfsllnplnksfkrkplivilsslfswi**rn
lqtlv*lslqlpqclsis
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/                       1168   0.0
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/                       1160   0.0
CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/                       1156   0.0
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                       1154   0.0
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/                       1152   0.0
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                       1128   0.0
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                       1128   0.0
VFM511 (VFM511Q) /CSM/VF/VFM5-A/VFM511Q.Seq.d/                       1116   0.0
AFO548 (AFO548Q) /CSM/AF/AFO5-B/AFO548Q.Seq.d/                       1110   0.0
CFB439 (CFB439Q) /CSM/CF/CFB4-B/CFB439Q.Seq.d/                       1061   0.0
own update 2002.12.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ434025) Dictyostelium discoideum cDNA clone:ddv23m15, 3' ...  1168   0.0    1
(AF222688) Dictyostelium discoideum dynacortin (dct) mRNA, c...  1160   0.0    1
(BJ373316) Dictyostelium discoideum cDNA clone:ddc2p18, 3' e...  1160   0.0    1
(BJ376320) Dictyostelium discoideum cDNA clone:ddc28e01, 3' ...  1156   0.0    1
(BJ399351) Dictyostelium discoideum cDNA clone:dds5g18, 3' e...  1152   0.0    1
(C84047) Dictyostelium discoideum slug cDNA, clone SSC538.       1128   0.0    1
(C84045) Dictyostelium discoideum slug cDNA, clone SSC534.       1128   0.0    1
(BJ435092) Dictyostelium discoideum cDNA clone:ddv26e03, 3' ...  1116   0.0    1
(BJ346287) Dictyostelium discoideum cDNA clone:dda30o11, 3' ...  1110   0.0    1
(BJ373520) Dictyostelium discoideum cDNA clone:ddc3n10, 3' e...  1061   0.0    1
dna update 2009. 3. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   269   5e-71
EU565733_1(EU565733|pid:none) Uncultured soil bacterium clone gl...    35   2.1
AB026630_1(AB026630|pid:none) Emericella nidulans gene for branc...    33   7.8
(Q9Y8H3) RecName: Full=1,4-alpha-glucan-branching enzyme;       ...    33   7.8
protein update 2009. 6.23
PSORT 

 psg: 0.84  gvh: 0.44  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 36.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for VFL163 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFL163Z
3' end seq. 
>VFL163Z.Seq
NNNNNNNNNNTTCCAGCATATACTTCATTAAATTCATCATCCTCATCCACCATCTCAAAG
AGTAATAGCAATCAAAGCCCTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAA
TCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATT
ATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTA
GAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCACCA
CCAGTCTCTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAA
TCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATC
GCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATC
ATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAG
GAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTC
Length of 3' end seq. 599
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -