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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFL160
Library VF
(Link to library)
Clone ID VFL160
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15241-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFL160 (VFL160Q) /CSM/VF/VFL1-C/VFL160Q.Seq.d/
XXXXXXXXXXCNNCNCNAACCCCANCTGAAACCCCAACACAAACACCAACTGAAACCCCA
ACCAAACACCAACACAAACCCCAACTCAAACACCAAGTCCAACTCCATCAGCGTGTTCAG
CAAATGTTACCCAAAAGATTATTAATCAATGGTACAGTAACAATGTTTACTATATTCAAG
TTGATGCTACCATCAATAACAAAGGTTCTAAACCAGTAAGAGGTTTCAACTTCCAATTAC
AAAACGTTCAAGACATAT
sequence update 2001.11.22
Translated Amino Acid sequence 
---xxnpx*npntntn*NPNQTPTQTPTQTPSPTPSACSANVTQKIINQWYSNNVYYIQV
DATINNKGSKPVRGFNFQLQNVQDI
Translated Amino Acid sequence (All Frames) 
Frame A:
---xxnpx*npntntn*NPNQTPTQTPTQTPSPTPSACSANVTQKIINQWYSNNVYYIQV
DATINNKGSKPVRGFNFQLQNVQDI


Frame B:
---xxtpxetptqtptetptkhqhkpqlkhqvqlhqrvqqmlpkrllingtvtmftifkl
mlpsitkvlnq*evstsnyktfkty


Frame C:
---xxpxlkpqhkhqlkpqpntntnpnsntksnsisvfskcypkdy*smvq*qcllyss*
cyhq*qrf*tskrfqlpitkrsrh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN762 (VFN762Q) /CSM/VF/VFN7-C/VFN762Q.Seq.d/                        321   3e-87
VFL160 (VFL160Q) /CSM/VF/VFL1-C/VFL160Q.Seq.d/                        321   3e-87
VFJ868 (VFJ868Q) /CSM/VF/VFJ8-C/VFJ868Q.Seq.d/                        321   3e-87
VFJ812 (VFJ812Q) /CSM/VF/VFJ8-A/VFJ812Q.Seq.d/                        321   3e-87
VFF477 (VFF477Q) /CSM/VF/VFF4-D/VFF477Q.Seq.d/                        321   3e-87
VFA855 (VFA855Q) /CSM/VF/VFA8-C/VFA855Q.Seq.d/                        321   3e-87
VFA208 (VFA208Q) /CSM/VF/VFA2-A/VFA208Q.Seq.d/                        321   3e-87
VFD503 (VFD503Q) /CSM/VF/VFD5-A/VFD503Q.Seq.d/                        317   4e-86
VFI655 (VFI655Q) /CSM/VF/VFI6-C/VFI655Q.Seq.d/                        313   7e-85
SFC154 (SFC154Q) /CSM/SF/SFC1-C/SFC154Q.Seq.d/                        313   7e-85
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ435847) Dictyostelium discoideum cDNA clone:ddv28l15, 3' ...   299   3e-77  1
(BJ433995) Dictyostelium discoideum cDNA clone:ddv23g15, 3' ...   299   3e-77  1
(BJ433041) Dictyostelium discoideum cDNA clone:ddv20h18, 3' ...   299   3e-77  1
(BJ432864) Dictyostelium discoideum cDNA clone:ddv20h04, 3' ...   299   3e-77  1
(BJ429199) Dictyostelium discoideum cDNA clone:ddv2n14, 3' e...   299   3e-77  1
(BJ428774) Dictyostelium discoideum cDNA clone:ddv1o02, 3' e...   299   3e-77  1
(BJ428419) Dictyostelium discoideum cDNA clone:ddv11j20, 3' ...   299   3e-77  1
(BJ430628) Dictyostelium discoideum cDNA clone:ddv8e01, 3' e...   295   4e-76  1
(BJ432432) Dictyostelium discoideum cDNA clone:ddv18m14, 3' ...   291   6e-75  1
(BJ399363) Dictyostelium discoideum cDNA clone:dds5k13, 3' e...   291   6e-75  1
dna update 2009. 3. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    52   6e-06
(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    50   2e-05
BT000696_1(BT000696|pid:none) Arabidopsis thaliana clone RAFL07-...    35   0.63
AK125511_1(AK125511|pid:none) Homo sapiens cDNA FLJ43523 fis, cl...    30   0.87
CP000975_2004(CP000975|pid:none) Methylacidiphilum infernorum V4...    28   7.1
protein update 2009. 2.17
PSORT 

 psg: 0.83  gvh: 0.35  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFL160 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFL160Z
3' end seq. 
>VFL160Z.Seq
NNNNNNNNNNCNNCNCNAACCCCANCTGAAACCCCAACACAAACACCAACTGAAACCCCA
ACCAAACACCAACACAAACCCCAACTCAAACACCAAGTCCAACTCCATCAGCGTGTTCAG
CAAATGTTACCCAAAAGATTATTAATCAATGGTACAGTAACAATGTTTACTATATTCAAG
TTGATGCTACCATCAATAACAAAGGTTCTAAACCAGTAAGAGGTTTCAACTTCCAATTAC
AAAACGTTCAAGACATAT
Length of 3' end seq. 258
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -