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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFL152
Library VF
(Link to library)
Clone ID VFL152
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14717-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFL152 (VFL152Q) /CSM/VF/VFL1-C/VFL152Q.Seq.d/
XXXXXXXXXXACTTATGATGGTGGTTATGCAGAGTATATGATTGCACCAATTAGTGCACT
TGTTAAAATACCAAAAGGAATGGACCCACTTGAAGCTGCACCATTGTTATGTGCAGGTGT
AACAGTTTATAATTCATTTAGACATCAAGACATTAAAGTAGGTTCATTGGTTGGTGTTAC
AGGTATTGGTGGTTTAGGTCATTATGCAATTCAATTCTGTAAGAAAATGGGTTACCAAGT
GATTGCAATGTCAAGTGGTAATTCAAAAGAACAACTCTCAAAAGAATTGGGTGCAGATTA
TTATGTTGATATGTCAAAGGATAATTACATTCAAGAGATTCAATCAAATTGGTTCAGTTA
AATGTATTTTAGCAAACTGCACCAATTGCATCACCTGTTCAAGGAGTATTAGAGTCTTTA
GGNATAAATNGTAAATTGGT
sequence update 2001.11.22
Translated Amino Acid sequence 
---YDGGYAEYMIAPISALVKIPKGMDPLEAAPLLCAGVTVYNSFRHQDIKVGSLVGVTG
IGGLGHYAIQFCKKMGYQVIAMSSGNSKEQLSKELGADYYVDMSKDNYIQEIQSNWFS*m
yfsklhqlhhlfkey*sl*x*xvnw
Translated Amino Acid sequence (All Frames) 
Frame A:
---lmmvvmqsi*lhqlvhllkyqkewthlklhhcyvqv*qfiihldiktlk*vhwlvlq
vlvv*vimqfnsvrkwvtk*lqcqvviqknnsqknwvqiimlicqriitfkrfnqigsvk
cilanctncitcsrsirvfrxkx*ig


Frame B:
---l*wwlcrvydctn*ctc*ntkrngpt*sctivmcrcnsl*fi*tsrh*srfigwcyr
ywwfrslcnsil*englpsdcnvkw*fkrttlkrigcrllc*yvkg*lhsrdsiklvqln
vf*qtapiaspvqgvleslginxkl


Frame C:
---YDGGYAEYMIAPISALVKIPKGMDPLEAAPLLCAGVTVYNSFRHQDIKVGSLVGVTG
IGGLGHYAIQFCKKMGYQVIAMSSGNSKEQLSKELGADYYVDMSKDNYIQEIQSNWFS*m
yfsklhqlhhlfkey*sl*x*xvnw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL152 (VFL152Q) /CSM/VF/VFL1-C/VFL152Q.Seq.d/                        841   0.0
VFO687 (VFO687Q) /CSM/VF/VFO6-D/VFO687Q.Seq.d/                        785   0.0
VFM488 (VFM488Q) /CSM/VF/VFM4-D/VFM488Q.Seq.d/                        785   0.0
VFK647 (VFK647Q) /CSM/VF/VFK6-B/VFK647Q.Seq.d/                        785   0.0
VFJ126 (VFJ126Q) /CSM/VF/VFJ1-B/VFJ126Q.Seq.d/                        785   0.0
VFI869 (VFI869Q) /CSM/VF/VFI8-C/VFI869Q.Seq.d/                        785   0.0
VFH533 (VFH533Q) /CSM/VF/VFH5-B/VFH533Q.Seq.d/                        785   0.0
VFE846 (VFE846Q) /CSM/VF/VFE8-B/VFE846Q.Seq.d/                        785   0.0
VFD860 (VFD860Q) /CSM/VF/VFD8-C/VFD860Q.Seq.d/                        785   0.0
VFB752 (VFB752Q) /CSM/VF/VFB7-C/VFB752Q.Seq.d/                        785   0.0
own update 2001.12. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ433993) Dictyostelium discoideum cDNA clone:ddv23g13, 3' ...   841   0.0    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   668   0.0    3
(BJ430750) Dictyostelium discoideum cDNA clone:ddv8h16, 3' e...   668   0.0    3
(BJ428001) Dictyostelium discoideum cDNA clone:ddv10l12, 3' ...   668   0.0    3
(BJ432419) Dictyostelium discoideum cDNA clone:ddv18j18, 3' ...   668   0.0    3
(BJ434217) Dictyostelium discoideum cDNA clone:ddv16a09, 3' ...   668   0.0    3
(BJ429699) Dictyostelium discoideum cDNA clone:ddv4h13, 3' e...   668   0.0    3
(BJ435071) Dictyostelium discoideum cDNA clone:ddv25p22, 3' ...   668   0.0    3
(BJ436358) Dictyostelium discoideum cDNA clone:ddv30m22, 3' ...   668   0.0    3
(BJ433618) Dictyostelium discoideum cDNA clone:ddv22m12, 3' ...   664   0.0    3
dna update 2009. 3. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_6(AC116984|pid:none) Dictyostelium discoideum chromosom...   228   9e-64
AC116984_84(AC116984|pid:none) Dictyostelium discoideum chromoso...   173   2e-42
AC117072_38(AC117072|pid:none) Dictyostelium discoideum chromoso...   165   1e-41
CP001053_1640(CP001053|pid:none) Burkholderia phytofirmans PsJN ...   127   1e-28
CP000271_1921(CP000271|pid:none) Burkholderia xenovorans LB400 c...   124   8e-28
AY596296_262(AY596296|pid:none) Haloarcula marismortui ATCC 4304...   122   3e-27
CP000159_2251(CP000159|pid:none) Salinibacter ruber DSM 13855, c...   122   4e-27
CP000360_3040(CP000360|pid:none) Acidobacteria bacterium Ellin34...   113   2e-24
CP000721_3789(CP000721|pid:none) Clostridium beijerinckii NCIMB ...   112   5e-24
AP009386_144(AP009386|pid:none) Burkholderia multivorans ATCC 17...   110   2e-23
protein update 2009. 6.23
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFL152 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFL152Z
3' end seq. 
>VFL152Z.Seq
NNNNNNNNNNACTTATGATGGTGGTTATGCAGAGTATATGATTGCACCAATTAGTGCACT
TGTTAAAATACCAAAAGGAATGGACCCACTTGAAGCTGCACCATTGTTATGTGCAGGTGT
AACAGTTTATAATTCATTTAGACATCAAGACATTAAAGTAGGTTCATTGGTTGGTGTTAC
AGGTATTGGTGGTTTAGGTCATTATGCAATTCAATTCTGTAAGAAAATGGGTTACCAAGT
GATTGCAATGTCAAGTGGTAATTCAAAAGAACAACTCTCAAAAGAATTGGGTGCAGATTA
TTATGTTGATATGTCAAAGGATAATTACATTCAAGAGATTCAATCAAATTGGTTCAGTTA
AATGTATTTTAGCAAACTGCACCAATTGCATCACCTGTTCAAGGAGTATTAGAGTCTTTA
GGNATAAATNGTAAATTGGT
Length of 3' end seq. 440
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -