AFM873
Library AF
(Link to library)
Clone ID AFM873
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM873 (AFM873Q) /CSM/AF/AFM8-D/AFM873Q.Seq.d/
CTGAAAGNTTAATTTTAGATACTAGGGCAATTAGAAATCTCTCATTGTCNTGATGTTACT
TCAAATCCAATTAATCCTCAAACTTTCAGAAGAACATAAAGTTTTTGGTNAANCATTAAT
CATTTCAATTNCANAAGGTTTAAGATCAXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence
*kxnfry*gn*KSLIVXMLLQIQLILKLSEEHKVFGXXLIISIXXGLR---


Translated Amino Acid sequence (All Frames)
Frame A:
lkx*f*ilgqleishcxdvtsnpinpqtfrrt*sfwxxinhfnxxrfki---


Frame B:
*kxnfry*gn*KSLIVXMLLQIQLILKLSEEHKVFGXXLIISIXXGLR---


Frame C:
exlildtrairnlsls*cyfksn*ssnfqknikflvxh*sfqxxkv*d---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM873 (AFM873Q) /CSM/AF/AFM8-D/AFM873Q.Seq.d/ 258 2e-68
VSG643 (VSG643Q) /CSM/VS/VSG6-B/VSG643Q.Seq.d/ 194 3e-49
VHK120 (VHK120Q) /CSM/VH/VHK1-A/VHK120Q.Seq.d/ 194 3e-49
VHK115 (VHK115Q) /CSM/VH/VHK1-A/VHK115Q.Seq.d/ 194 3e-49
VHI725 (VHI725Q) /CSM/VH/VHI7-B/VHI725Q.Seq.d/ 194 3e-49
VHE268 (VHE268Q) /CSM/VH/VHE2-C/VHE268Q.Seq.d/ 194 3e-49
VHC213 (VHC213Q) /CSM/VH/VHC2-A/VHC213Q.Seq.d/ 194 3e-49
VHB314 (VHB314Q) /CSM/VH/VHB3-A/VHB314Q.Seq.d/ 194 3e-49
SFC766 (SFC766Q) /CSM/SF/SFC7-C/SFC766Q.Seq.d/ 194 3e-49
CFC772 (CFC772Q) /CSM/CF/CFC7-C/CFC772Q.Seq.d/ 194 3e-49

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ329919) Dictyostelium discoideum cDNA clone:dda26b20, 5' ... 258 5e-65 1
(BJ423999) Dictyostelium discoideum cDNA clone:ddv51g05, 5' ... 117 3e-48 3
(BJ418550) Dictyostelium discoideum cDNA clone:ddv33l03, 5' ... 117 3e-48 3
(BJ330471) Dictyostelium discoideum cDNA clone:dda31m17, 5' ... 117 3e-48 3
(BJ423155) Dictyostelium discoideum cDNA clone:ddv48b07, 5' ... 117 3e-48 3
(BJ419120) Dictyostelium discoideum cDNA clone:ddv35i04, 5' ... 117 3e-48 3
(BJ329640) Dictyostelium discoideum cDNA clone:dda25b23, 5' ... 117 3e-48 3
(BJ424028) Dictyostelium discoideum cDNA clone:ddv51m03, 5' ... 117 3e-48 3
(BJ360558) Dictyostelium discoideum cDNA clone:ddc6p17, 5' e... 117 3e-48 3
(BJ420526) Dictyostelium discoideum cDNA clone:ddv39g18, 5' ... 117 3e-48 3
dna update 2009. 4.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P52922) RecName: Full=Leukotriene A-4 hydrolase; EC=3.... 35 2e-05

protein update 2009. 4. 6
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM873 is

5' end seq. ID AFM873F
5' end seq.
>AFM873F.Seq
CTGAAAGNTTAATTTTAGATACTAGGGCAATTAGAAATCTCTCATTGTCNTGATGTTACT
TCAAATCCAATTAATCCTCAAACTTTCAGAAGAACATAAAGTTTTTGGTNAANCATTAAT
CATTTCAATTNCANAAGGTTTAAGATCAXXXXXXXXXX
Length of 5' end seq. 158
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -