VFL147
Library VF
(Link to library)
Clone ID VFL147
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16276-1
Original site URL
Representative seq. ID VFL147P
(Link to Original site)
Representative DNA sequence
>VFL147 (VFL147Q) /CSM/VF/VFL1-B/VFL147Q.Seq.d/
ATTGAAATTTTCACATCAAAACAAAATGGTCATGAAATTATACACCTACCCACAAAACAG
CCGTGCTTTCAAAAGTTTAATTGCTGCTAAATACGTCAATGTTGATATTGAAGTACCAGC
TTTCAACTTTGAAACTGATCGTTTAACTGAAGAGTTCAAAACCAACTTCCCATTAGGTAA
AGTTCCAGCTTTATTAACTGAACAAGGTCCACTCTTTGAATCAAACACCATGGCTCGTTA
TGTTGCTCGTTTAAATAACAGCACCATCTATGGTTCAGATGCATACACTGCCGCCCTCAA
TGACCAATGGATTGATTATGCAGCCAACGAAATCGACCCAAATGCCATTCCATGGTTATA
TGCCATCCTCGGTTATTACGATTACAATGCTAAAGACAGCAACAAAGCCAAAGAAAACAT
GAAAAAAGTCTTAGCTTTCCTCGATGCCCAACTCCTCAACAAGCCATTCCTTACTGGTTT
CCGTGTCGCTCTTGCCGATATCATCGTTGTTTGTTCATTATTCAACTTTTACAAAATGGT
CTTTGAACCAACTTTCCGTTCCCCATACGTTAACGTCAACAGATGGTTCACCACCTGTAT
CAACCAXXXXXXXXXXTGCTCCAAAGAAGGAAGTCAAAGAAGAAAAACCAAAAGCTGCCC
CAAAGAAGGAAGTCAAAGAAGACGCTGGTGACGATGAAGTCGATGAAAAACCAAAAAAGA
AAAACCCATTAGATGAATTAGCTCCATCAACCTTTGTTTTGGATGAATTCAAACGTACCT
ACTCCAACAATGAAGTCTCCATGTCCATTCCATGGTTCTTTGAACACTTTGACAAGGAAG
GTTTCTCTGTCTACCAATGTACCTACCAATACAATCACGAATTAGGTCCAGTCTTCAAAA
CTTGCAACTTGGTTGGTGGTTTCTTCCAAAGACTCGAAACTCTCCACAAATACGCTTTCG
CCTCTATGATCATTTTCGGTGAAGAACAAGGTGGTGCCGTCAAAGATCAAACCGTCTCTG
GTCTCTGGGTTTTCCGTGGTCAAGATTTACCAGCTGACATGAAAGATTGTGATGATTCTT
TAGTCTATGACTGGAAGAAACTCGATGTTGCTGCTGATAAAGCTATCATTGAATCTTTCC
TTGCTTGGGAAGATAAAAACGGTGGTTTCGCTGGTAAGAAATTCTTACAAGGTAAATTAT
ACAAATAAATTAATTTAAATTNATTTAAAATTT
sequence update 2001.11.22
Translated Amino Acid sequence
LKFSHQNKMVMKLYTYPQNSRAFKSLIAAKYVNVDIEVPAFNFETDRLTEEFKTNFPLGK
VPALLTEQGPLFESNTMARYVARLNNSTIYGSDAYTAALNDQWIDYAANEIDPNAIPWLY
AILGYYDYNAKDSNKAKENMKKVLAFLDAQLLNKPFLTGFRVALADIIVVCSLFNFYKMV
FEPTFRSPYVNVNRWFTTCIN---

---APKKEVKEEKPKAAPKKEVKEDAGDDEVDEKPKKKNPLDELAPSTFVLDEFKRTYSN
NEVSMSIPWFFEHFDKEGFSVYQCTYQYNHELGPVFKTCNLVGGFFQRLETLHKYAFASM
IIFGEEQGGAVKDQTVSGLWVFRGQDLPADMKDCDDSLVYDWKKLDVAADKAIIESFLAW
EDKNGGFAGKKFLQGKLYK*inlnxfki


Translated Amino Acid sequence (All Frames)
Frame A:
ieiftskqngheiihlptkqpcfqkfncc*irqc*y*stsfql*n*sfn*rvqnqlpir*
sssfin*trstl*ikhhgslccsfk*qhhlwfrcihcrpq*pmd*lcsqrnrpkchsmvi
chprllrlqc*rqqqsqrkhekslsfprcptpqqaipywfpcrscryhrclfiiqllqng
l*tnfpfpir*rqqmvhhlyqp---

---cskegsqrrktkscpkegsqrrrw*r*sr*ktkkekpir*issinlcfg*iqtyllq
q*slhvhsmvl*tl*qgrflclpmylpiqsrirsslqnlqlgwwflpktrnspqirfrly
dhfr*rtrwcrqrsnrlwslgfpwsrfts*herl**ffsl*leetrccc**syh*ifpcl
gr*krwfrw*eiltr*iiqin*fkxi*n

Frame B:
LKFSHQNKMVMKLYTYPQNSRAFKSLIAAKYVNVDIEVPAFNFETDRLTEEFKTNFPLGK
VPALLTEQGPLFESNTMARYVARLNNSTIYGSDAYTAALNDQWIDYAANEIDPNAIPWLY
AILGYYDYNAKDSNKAKENMKKVLAFLDAQLLNKPFLTGFRVALADIIVVCSLFNFYKMV
FEPTFRSPYVNVNRWFTTCIN---

---APKKEVKEEKPKAAPKKEVKEDAGDDEVDEKPKKKNPLDELAPSTFVLDEFKRTYSN
NEVSMSIPWFFEHFDKEGFSVYQCTYQYNHELGPVFKTCNLVGGFFQRLETLHKYAFASM
IIFGEEQGGAVKDQTVSGLWVFRGQDLPADMKDCDDSLVYDWKKLDVAADKAIIESFLAW
EDKNGGFAGKKFLQGKLYK*inlnxfki

Frame C:
*nfhiktkws*nytpthktavlskv*lllntsmlilkyqlstlkliv*lksskptsh*vk
fqly*lnkvhslnqtpwlvmllv*itapsmvqmhtlppsmtnglimqptkstqmpfhgym
pssvititmlktatkpkkt*kks*lssmpnsstshsllvsvsllpisslfvhystftkws
lnqlsvphtltstdgsppvst---

---lqrrkskkknqklpqrrkskktlvtmksmknqkrkth*mn*lhqplfwmnsnvptpt
mkspcpfhgslntltrkvslstnvptntitn*vqssklatwlvvsskdsklstntlspl*
sfsvknkvvpskikpslvsgfsvvkiyqlt*kivmil*smtgrnsmllliklslnlsllg
kiktvvslvrnsykvnytnkli*ixlkf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL147 (VFL147Q) /CSM/VF/VFL1-B/VFL147Q.Seq.d/ 1338 0.0
VFK715 (VFK715Q) /CSM/VF/VFK7-A/VFK715Q.Seq.d/ 1199 0.0
VFK203 (VFK203Q) /CSM/VF/VFK2-A/VFK203Q.Seq.d/ 1199 0.0
VFF895 (VFF895Q) /CSM/VF/VFF8-D/VFF895Q.Seq.d/ 1199 0.0
VFF622 (VFF622Q) /CSM/VF/VFF6-A/VFF622Q.Seq.d/ 1199 0.0
VFD134 (VFD134Q) /CSM/VF/VFD1-B/VFD134Q.Seq.d/ 1199 0.0
VFC846 (VFC846Q) /CSM/VF/VFC8-B/VFC846Q.Seq.d/ 1199 0.0
SFE656 (SFE656Q) /CSM/SF/SFE6-C/SFE656Q.Seq.d/ 1199 0.0
SFD518 (SFD518Q) /CSM/SF/SFD5-A/SFD518Q.Seq.d/ 1199 0.0
AFH857 (AFH857Q) /CSM/AF/AFH8-C/AFH857Q.Seq.d/ 1199 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ415702) Dictyostelium discoideum cDNA clone:ddv23m11, 5' ... 1201 0.0 1
(BJ415320) Dictyostelium discoideum cDNA clone:ddv22n03, 5' ... 1199 0.0 1
(BJ414974) Dictyostelium discoideum cDNA clone:ddv21e02, 5' ... 1199 0.0 1
(BJ412186) Dictyostelium discoideum cDNA clone:ddv7c09, 5' e... 1199 0.0 1
(BJ411943) Dictyostelium discoideum cDNA clone:ddv6l12, 5' e... 1199 0.0 1
(BJ410545) Dictyostelium discoideum cDNA clone:ddv12n24, 5' ... 1199 0.0 1
(BJ410338) Dictyostelium discoideum cDNA clone:ddv12k06, 5' ... 1199 0.0 1
(BJ388121) Dictyostelium discoideum cDNA clone:dds8c05, 5' e... 1199 0.0 1
(BJ386787) Dictyostelium discoideum cDNA clone:dds10o14, 5' ... 1199 0.0 1
(BJ326441) Dictyostelium discoideum cDNA clone:dda16b16, 5' ... 1199 0.0 1
dna update 2009. 3. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY737542_1(AY737542|pid:none) Toxoptera citricida putative trans... 150 2e-72
EU937995_1(EU937995|pid:none) Phytophthora sojae calcium-depende... 182 5e-69
DQ241837_1(DQ241837|pid:none) Solanum tuberosum clone 180F09 put... 130 2e-59
DQ207868_1(DQ207868|pid:none) Solanum tuberosum clone 085G10 unk... 124 2e-57
DQ680309_1(DQ680309|pid:none) Nemesiidae sp. NAA-2006 elongation... 129 4e-56
AB246880_1(AB246880|pid:none) Lethenteron japonicum EEF1G mRNA f... 175 3e-42
(Q6PE25) RecName: Full=Elongation factor 1-gamma; Short... 167 5e-40
(Q90YC0) RecName: Full=Elongation factor 1-gamma; Short... 167 5e-40
BT044055_1(BT044055|pid:none) Salmo salar clone HM4_2581 elongat... 164 6e-39
BT056809_1(BT056809|pid:none) Salmo salar clone ssal-eve-528-150... 164 6e-39
protein update 2009. 6.23
PSORT

psg: 0.79 gvh: 0.47 alm: 0.31 top: 0.47 tms: 0.07 mit: 0.36 mip: 0.05
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.06 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VFL147 is end

5' end seq. ID VFL147F
5' end seq.
>VFL147F.Seq
ATTGAAATTTTCACATCAAAACAAAATGGTCATGAAATTATACACCTACCCACAAAACAG
CCGTGCTTTCAAAAGTTTAATTGCTGCTAAATACGTCAATGTTGATATTGAAGTACCAGC
TTTCAACTTTGAAACTGATCGTTTAACTGAAGAGTTCAAAACCAACTTCCCATTAGGTAA
AGTTCCAGCTTTATTAACTGAACAAGGTCCACTCTTTGAATCAAACACCATGGCTCGTTA
TGTTGCTCGTTTAAATAACAGCACCATCTATGGTTCAGATGCATACACTGCCGCCCTCAA
TGACCAATGGATTGATTATGCAGCCAACGAAATCGACCCAAATGCCATTCCATGGTTATA
TGCCATCCTCGGTTATTACGATTACAATGCTAAAGACAGCAACAAAGCCAAAGAAAACAT
GAAAAAAGTCTTAGCTTTCCTCGATGCCCAACTCCTCAACAAGCCATTCCTTACTGGTTT
CCGTGTCGCTCTTGCCGATATCATCGTTGTTTGTTCATTATTCAACTTTTACAAAATGGT
CTTTGAACCAACTTTCCGTTCCCCATACGTTAACGTCAACAGATGGTTCACCACCTGTAT
CAACCANNNNNNNNNN
Length of 5' end seq. 616
3' end seq. ID VFL147Z
3' end seq.
>VFL147Z.Seq
NNNNNNNNNNTGCTCCAAAGAAGGAAGTCAAAGAAGAAAAACCAAAAGCTGCCCCAAAGA
AGGAAGTCAAAGAAGACGCTGGTGACGATGAAGTCGATGAAAAACCAAAAAAGAAAAACC
CATTAGATGAATTAGCTCCATCAACCTTTGTTTTGGATGAATTCAAACGTACCTACTCCA
ACAATGAAGTCTCCATGTCCATTCCATGGTTCTTTGAACACTTTGACAAGGAAGGTTTCT
CTGTCTACCAATGTACCTACCAATACAATCACGAATTAGGTCCAGTCTTCAAAACTTGCA
ACTTGGTTGGTGGTTTCTTCCAAAGACTCGAAACTCTCCACAAATACGCTTTCGCCTCTA
TGATCATTTTCGGTGAAGAACAAGGTGGTGCCGTCAAAGATCAAACCGTCTCTGGTCTCT
GGGTTTTCCGTGGTCAAGATTTACCAGCTGACATGAAAGATTGTGATGATTCTTTAGTCT
ATGACTGGAAGAAACTCGATGTTGCTGCTGATAAAGCTATCATTGAATCTTTCCTTGCTT
GGGAAGATAAAAACGGTGGTTTCGCTGGTAAGAAATTCTTACAAGGTAAATTATACAAAT
AAATTAATTTAAATTNATTTAAAATTT
Length of 3' end seq. 627
Connected seq. ID VFL147P
Connected seq.
>VFL147P.Seq
ATTGAAATTTTCACATCAAAACAAAATGGTCATGAAATTATACACCTACCCACAAAACAG
CCGTGCTTTCAAAAGTTTAATTGCTGCTAAATACGTCAATGTTGATATTGAAGTACCAGC
TTTCAACTTTGAAACTGATCGTTTAACTGAAGAGTTCAAAACCAACTTCCCATTAGGTAA
AGTTCCAGCTTTATTAACTGAACAAGGTCCACTCTTTGAATCAAACACCATGGCTCGTTA
TGTTGCTCGTTTAAATAACAGCACCATCTATGGTTCAGATGCATACACTGCCGCCCTCAA
TGACCAATGGATTGATTATGCAGCCAACGAAATCGACCCAAATGCCATTCCATGGTTATA
TGCCATCCTCGGTTATTACGATTACAATGCTAAAGACAGCAACAAAGCCAAAGAAAACAT
GAAAAAAGTCTTAGCTTTCCTCGATGCCCAACTCCTCAACAAGCCATTCCTTACTGGTTT
CCGTGTCGCTCTTGCCGATATCATCGTTGTTTGTTCATTATTCAACTTTTACAAAATGGT
CTTTGAACCAACTTTCCGTTCCCCATACGTTAACGTCAACAGATGGTTCACCACCTGTAT
CAACCA----------TGCTCCAAAGAAGGAAGTCAAAGAAGAAAAACCAAAAGCTGCCC
CAAAGAAGGAAGTCAAAGAAGACGCTGGTGACGATGAAGTCGATGAAAAACCAAAAAAGA
AAAACCCATTAGATGAATTAGCTCCATCAACCTTTGTTTTGGATGAATTCAAACGTACCT
ACTCCAACAATGAAGTCTCCATGTCCATTCCATGGTTCTTTGAACACTTTGACAAGGAAG
GTTTCTCTGTCTACCAATGTACCTACCAATACAATCACGAATTAGGTCCAGTCTTCAAAA
CTTGCAACTTGGTTGGTGGTTTCTTCCAAAGACTCGAAACTCTCCACAAATACGCTTTCG
CCTCTATGATCATTTTCGGTGAAGAACAAGGTGGTGCCGTCAAAGATCAAACCGTCTCTG
GTCTCTGGGTTTTCCGTGGTCAAGATTTACCAGCTGACATGAAAGATTGTGATGATTCTT
TAGTCTATGACTGGAAGAAACTCGATGTTGCTGCTGATAAAGCTATCATTGAATCTTTCC
TTGCTTGGGAAGATAAAAACGGTGGTTTCGCTGGTAAGAAATTCTTACAAGGTAAATTAT
ACAAATAAATTAATTTAAATTNATTTAAAATTT
Length of connected seq. 1223
Full length Seq ID -
Full length Seq. -
Length of full length seq. -