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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM872
Library AF
(Link to library)
Clone ID AFM872
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM872 (AFM872Q) /CSM/AF/AFM8-C/AFM872Q.Seq.d/
XXXXXXXXXXTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAA
AACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGT
TTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGT
TCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCT
TCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCA
ACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAA
GGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTT
GAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTT
AAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGA
AAGAATA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---GCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGS
EISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEG
PVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRK
N
Translated Amino Acid sequence (All Frames) 
Frame A:
---wl*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*i*ywcnh*rlc*hycrf
rdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcfscwlwcsr*r**r
ssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgykrlhfnvkg*k
e


Frame B:
---GCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGS
EISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEG
PVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRK
N


Frame C:
---vvmvv**imhliislktrvltlkvvihillklvqhvysinlilvqplkvmltllpvq
rfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf*llvmvfkvkmmkv
qy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*kvtf*cqrier
i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1065   0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                       1065   0.0
SFK574 (SFK574Q) /CSM/SF/SFK5-D/SFK574Q.Seq.d/                       1065   0.0
SFG645 (SFG645Q) /CSM/SF/SFG6-B/SFG645Q.Seq.d/                       1065   0.0
SFC863 (SFC863Q) /CSM/SF/SFC8-C/SFC863Q.Seq.d/                       1065   0.0
CFH558 (CFH558Q) /CSM/CF/CFH5-C/CFH558Q.Seq.d/                       1065   0.0
AHH563 (AHH563Q) /CSM/AH/AHH5-C/AHH563Q.Seq.d/                       1065   0.0
AFO852 (AFO852Q) /CSM/AF/AFO8-C/AFO852Q.Seq.d/                       1065   0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/                       1065   0.0
AFN620 (AFN620Q) /CSM/AF/AFN6-A/AFN620Q.Seq.d/                       1065   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X03344) Dictyostelium discoideum mRNA for cysteine proteina...  1065   0.0    1
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462.       1065   0.0    1
(C91266) Dictyostelium discoideum slug cDNA, clone SSJ524.       1065   0.0    1
(BJ401286) Dictyostelium discoideum cDNA clone:dds22c19, 3' ...  1065   0.0    1
(BJ400695) Dictyostelium discoideum cDNA clone:dds14i12, 3' ...  1065   0.0    1
(BJ399605) Dictyostelium discoideum cDNA clone:dds6n16, 3' e...  1065   0.0    1
(BJ376299) Dictyostelium discoideum cDNA clone:ddc21o20, 3' ...  1065   0.0    1
(BJ374846) Dictyostelium discoideum cDNA clone:ddc16c15, 3' ...  1065   0.0    1
(BJ352412) Dictyostelium discoideum cDNA clone:dda46m15, 3' ...  1065   0.0    1
(BJ347465) Dictyostelium discoideum cDNA clone:dda27n04, 3' ...  1065   0.0    1
dna update 2009. 4.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   353   2e-96
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   190   2e-47
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   190   2e-47
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   174   1e-42
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   172   4e-42
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   170   2e-41
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   168   7e-41
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   166   5e-40
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like...   165   6e-40
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like...   165   6e-40
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM872 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM872Z
3' end seq. 
>AFM872Z.Seq
XXXXXXXXXXTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAA
AACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGT
TTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGT
TCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCT
TCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCA
ACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAA
GGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTT
GAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTT
AAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGA
AAGAATA
Length of 3' end seq. 547
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -