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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFL138
Library VF
(Link to library)
Clone ID VFL138
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11840-1|Contig-U16357-1
Original site URL
Representative seq. ID VFL138P
(Link to Original site)
Representative DNA sequence 
>VFL138 (VFL138Q) /CSM/VF/VFL1-B/VFL138Q.Seq.d/
CAGCAGGAGTAAAAGAATTAAGAGATTTAGATTGGGATTTATATTTTTTTGAAAACCCAG
AAAATATAGAGCCAAATTATAAAGAACCAACAAACTTATCCGTAATAGAATATGCATTAA
TAACAATCTATTTAAAAAAAAGAAATAAAGTAATAAAAACAAGATTATATTTTACATTAT
TATGTGCAGTAGTATTTTTAGCATGCCAAGGTTATGAATATTTTTTTGCACCATTTAGTA
TGAATGACGGAATATATGGATCATTATTTTTCTTATTAACAGGATTTCATGGATTTCATG
TATTAGTAGGAAGTATATTAATAGGAATAATCACAATAAGATTTATAGTAGGAAATTTCA
ATCTATTAAATGTAGGTACAAATTTTCAAATCTATAAAAATAAATCAACAGGATTTGCAT
GTACATTATTTTATTGGCATTTCGTTGATATTGTTTGGATTTTTCTATATATTGTAATAT
ATTGGTGGGGAAGTCGATAAAAATTAAACAGTATTATTAACTGATATGTTAATAACTAAA
AACAATAAGAAGAAAATTAAAAAAATCTCGAAAAGAGGAACTAATAAAGCCTTCTTACAX
XXXXXXXXXTNAATAAAAAAAAAATNAAACNAAAAAATGAAAATTTTNGGAANATATGAT
NAAAAAAAAACAAAAAAAAAAACTCAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACA
sequence update 2001.11.22
Translated Amino Acid sequence 
qqe*kn*ei*igiyiflktqki*sqiiknqqtyp**nmh**qsi*kkeik**kqdyilhy
yvq*yf*hakvmniflhhlv*mteymdhyfsy*qdfmdfmy**evy**e*sq*dl**eis
iy*m*vqifksikinqqdlhvhyfigislilfgffyil*yiggevdkn*TVLLTDMLITK
NNKKKIKKISKRGTNKAFL---

---XIKKKXNXKMKIXGXYDXKKTKKKTQQQQQQQQQQQQQQQQQQ
Translated Amino Acid sequence (All Frames) 
Frame A:
qqe*kn*ei*igiyiflktqki*sqiiknqqtyp**nmh**qsi*kkeik**kqdyilhy
yvq*yf*hakvmniflhhlv*mteymdhyfsy*qdfmdfmy**evy**e*sq*dl**eis
iy*m*vqifksikinqqdlhvhyfigislilfgffyil*yiggevdkn*TVLLTDMLITK
NNKKKIKKISKRGTNKAFL---

---XIKKKXNXKMKIXGXYDXKKTKKKTQQQQQQQQQQQQQQQQQQ

Frame B:
srskrikrfrlgfiff*kprkyrakl*rtnklirnricinnnlfkkkk*snknkiifyii
mcssifsmprl*iffcti*ye*rniwiiiflinriswiscisrkyinrnnhnkiysrkfq
sikcrykfsnl*k*inricmyiillafr*ycldfsiycnilvgksikikqyy*lic**lk
tirrklkksrkeelikpsy---

---x*kknxtkk*kfxexmxkkkqkkklnnnnnnnnnnnnnnnnnn

Frame C:
agvkelrdldwdlyffenpeniepnykeptnlsvieyalitiylkkrnkviktrlyftll
cavvflacqgyeyffapfsmndgiygslfflltgfhgfhvlvgsiligiitirfivgnfn
llnvgtnfqiyknkstgfactlfywhfvdivwiflyiviywwgsr*klnsiin*yvnn*k
q*een*knlekrn**sllt---

---nkkkxkxknenfxxi*xkknkkknstttttttttttttttttt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL138 (VFL138Q) /CSM/VF/VFL1-B/VFL138Q.Seq.d/                       1015   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/              1015   0.0
CFK269 (CFK269Q) /CSM/CF/CFK2-C/CFK269Q.Seq.d/                        936   0.0
VFC706 (VFC706Q) /CSM/VF/VFC7-A/VFC706Q.Seq.d/                        864   0.0
VSC452 (VSC452Q) /CSM/VS/VSC4-C/VSC452Q.Seq.d/                        803   0.0
VHN820 (VHN820Q) /CSM/VH/VHN8-A/VHN820Q.Seq.d/                        789   0.0
VSE322 (VSE322Q) /CSM/VS/VSE3-A/VSE322Q.Seq.d/                        628   e-179
VSD609 (VSD609Q) /CSM/VS/VSD6-A/VSD609Q.Seq.d/                        347   1e-94
VSE831 (VSE831Q) /CSM/VS/VSE8-B/VSE831Q.Seq.d/                        222   6e-57
VSA536 (VSA536Q) /CSM/VS/VSA5-B/VSA536Q.Seq.d/                        222   6e-57
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   656   0.0    5
(D16579) Dictyostelium discoideum mitochondrial genes for Gl...   656   0.0    5
(BJ415691) Dictyostelium discoideum cDNA clone:ddv23k09, 5' ...   656   0.0    5
(BJ376206) Dictyostelium discoideum cDNA clone:ddc21i18, 3' ...   617   0.0    4
(BJ411871) Dictyostelium discoideum cDNA clone:ddv6l01, 5' e...   521   0.0    5
(AU262575) Dictyostelium discoideum vegetative cDNA clone:VS...   656   0.0    3
(BJ426156) Dictyostelium discoideum cDNA clone:ddv58h06, 5' ...   521   0.0    4
(AU263020) Dictyostelium discoideum vegetative cDNA clone:VS...   597   e-178  2
(DQ336395) Dictyostelium citrinum mitochondrion, complete ge...   303   e-131  4
(AU264300) Dictyostelium discoideum vegetative cDNA clone:VS...   165   4e-97  3
dna update 2009. 2.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY700145_33(AY700145|pid:none) Polysphondylium pallidum mitochon...   177   2e-43
EU275726_4(EU275726|pid:none) Polysphondylium pallidum strain PN...   177   3e-43
EU275727_5(EU275727|pid:none) Dictyostelium fasciculatum strain ...   169   6e-41
AM292321_11(AM292321|pid:none) Microcosmus sulcatus complete mit...    94   4e-18
AY728234_7(AY728234|pid:none) Hydromantes brunus mitochondrion, ...    93   1e-17
DQ365900_35(DQ365900|pid:none) Oltmannsiellopsis viridis mitocho...    92   2e-17
AY452691_1(AY452691|pid:none) Nephila clavata mitochondrion, com...    91   3e-17
S43493(S43493;S48139)cytochrome-c oxidase (EC 1.9.3.1) chain III...    91   4e-17
(P34842) RecName: Full=Cytochrome c oxidase subunit 3;          ...    91   5e-17
DQ287360_1(DQ287360|pid:none) Anopheles funestus cytochrome c ox...    91   5e-17
protein update 2009. 6.23
PSORT 

 psg: 0.23  gvh: 0.18  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VFL138 is nuc
5' end seq. ID VFL138F
5' end seq. 
>VFL138F.Seq
CAGCAGGAGTAAAAGAATTAAGAGATTTAGATTGGGATTTATATTTTTTTGAAAACCCAG
AAAATATAGAGCCAAATTATAAAGAACCAACAAACTTATCCGTAATAGAATATGCATTAA
TAACAATCTATTTAAAAAAAAGAAATAAAGTAATAAAAACAAGATTATATTTTACATTAT
TATGTGCAGTAGTATTTTTAGCATGCCAAGGTTATGAATATTTTTTTGCACCATTTAGTA
TGAATGACGGAATATATGGATCATTATTTTTCTTATTAACAGGATTTCATGGATTTCATG
TATTAGTAGGAAGTATATTAATAGGAATAATCACAATAAGATTTATAGTAGGAAATTTCA
ATCTATTAAATGTAGGTACAAATTTTCAAATCTATAAAAATAAATCAACAGGATTTGCAT
GTACATTATTTTATTGGCATTTCGTTGATATTGTTTGGATTTTTCTATATATTGTAATAT
ATTGGTGGGGAAGTCGATAAAAATTAAACAGTATTATTAACTGATATGTTAATAACTAAA
AACAATAAGAAGAAAATTAAAAAAATCTCGAAAAGAGGAACTAATAAAGCCTTCTTACAN
NNNNNNNNN
Length of 5' end seq. 609
3' end seq. ID VFL138Z
3' end seq. 
>VFL138Z.Seq
NNNNNNNNNNTNAATAAAAAAAAAATNAAACNAAAAAATGAAAATTTTNGGAANATATGA
TNAAAAAAAAACAAAAAAAAAAACTCAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACA
Length of 3' end seq. 141
Connected seq. ID VFL138P
Connected seq. 
>VFL138P.Seq
CAGCAGGAGTAAAAGAATTAAGAGATTTAGATTGGGATTTATATTTTTTTGAAAACCCAG
AAAATATAGAGCCAAATTATAAAGAACCAACAAACTTATCCGTAATAGAATATGCATTAA
TAACAATCTATTTAAAAAAAAGAAATAAAGTAATAAAAACAAGATTATATTTTACATTAT
TATGTGCAGTAGTATTTTTAGCATGCCAAGGTTATGAATATTTTTTTGCACCATTTAGTA
TGAATGACGGAATATATGGATCATTATTTTTCTTATTAACAGGATTTCATGGATTTCATG
TATTAGTAGGAAGTATATTAATAGGAATAATCACAATAAGATTTATAGTAGGAAATTTCA
ATCTATTAAATGTAGGTACAAATTTTCAAATCTATAAAAATAAATCAACAGGATTTGCAT
GTACATTATTTTATTGGCATTTCGTTGATATTGTTTGGATTTTTCTATATATTGTAATAT
ATTGGTGGGGAAGTCGATAAAAATTAAACAGTATTATTAACTGATATGTTAATAACTAAA
AACAATAAGAAGAAAATTAAAAAAATCTCGAAAAGAGGAACTAATAAAGCCTTCTTACA-
---------TNAATAAAAAAAAAATNAAACNAAAAAATGAAAATTTTNGGAANATATGAT
NAAAAAAAAACAAAAAAAAAAACTCAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACA
Length of connected seq. 730
Full length Seq ID -
Full length Seq. -
Length of full length seq. -