VFL133
Library VF
(Link to library)
Clone ID VFL133
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16505-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFL133 (VFL133Q) /CSM/VF/VFL1-B/VFL133Q.Seq.d/
XXXXXXXXXXTCATTACNCNCTCCATTGAATTNTCAAACTAAANANATGGTAAACTNTGA
ATCCNTCGAAAAAATNAAANATGGTGTTATGATTATCAACGTTTCAAAAGGNGCTTTAGT
TAANGCTTNTGANGCAANTGTTGGTTTAAAATCTGGTAAAANCAGTTCNCTTGGNATGGA
TGNCTATGAAAATGAAACCNATTACTTTTATCAAGATCCCAATGGNTCNATCNTTAAANA
TGANAATCNCNCTTTATTAATCTCTTANCCNAATGTTATGATCNCT
sequence update 2001.11.22
Translated Amino Acid sequence
---LXXPLNXQTKXMVNXESXEKXKXGVMIINVSKGALVXAXXAXVGLKSGKXSSLGMDX
YENETXYFYQDPNGSIXKXXNXXLLISXPNVMIX


Translated Amino Acid sequence (All Frames)
Frame A:
---hyxlh*ixklxxw*txnpskkxxmvl*lstfqkxl*lxlxxqxlv*nlvkxvxlxwm
xmkmkpitfikipmxxslxmxixly*slxxml*s


Frame B:
---itxsiexsn*xxgkl*ixrknxxwcydyqrfkrxfs*xx*xxcwfkiw*xqfxwxgx
l*k*nxlllsrsqwxxx*x*xsxfinllxxcydx


Frame C:
---LXXPLNXQTKXMVNXESXEKXKXGVMIINVSKGALVXAXXAXVGLKSGKXSSLGMDX
YENETXYFYQDPNGSIXKXXNXXLLISXPNVMIX


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL133 (VFL133Q) /CSM/VF/VFL1-B/VFL133Q.Seq.d/ 287 4e-77
VFF779 (VFF779Q) /CSM/VF/VFF7-D/VFF779Q.Seq.d/ 287 4e-77
SFE418 (SFE418Q) /CSM/SF/SFE4-A/SFE418Q.Seq.d/ 287 4e-77
VFG876 (VFG876Q) /CSM/VF/VFG8-D/VFG876Q.Seq.d/ 281 3e-75
VFE164 (VFE164Q) /CSM/VF/VFE1-C/VFE164Q.Seq.d/ 281 3e-75
VFH856 (VFH856Q) /CSM/VF/VFH8-C/VFH856Q.Seq.d/ 276 2e-73
VFC866 (VFC866Q) /CSM/VF/VFC8-C/VFC866Q.Seq.d/ 276 2e-73
VSK319 (VSK319Q) /CSM/VS/VSK3-A/VSK319Q.Seq.d/ 272 3e-72
VSJ538 (VSJ538Q) /CSM/VS/VSJ5-B/VSJ538Q.Seq.d/ 272 3e-72
VSE360 (VSE360Q) /CSM/VS/VSE3-C/VSE360Q.Seq.d/ 272 3e-72

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ433882) Dictyostelium discoideum cDNA clone:ddv23a09, 3' ... 375 e-100 1
(BJ428703) Dictyostelium discoideum cDNA clone:ddv12n19, 3' ... 363 2e-96 1
(BJ400164) Dictyostelium discoideum cDNA clone:dds9d06, 3' e... 363 2e-96 1
(BJ431615) Dictyostelium discoideum cDNA clone:ddv14h20, 3' ... 357 1e-94 1
(BJ431047) Dictyostelium discoideum cDNA clone:ddv9o15, 3' e... 357 1e-94 1
(BJ434384) Dictyostelium discoideum cDNA clone:ddv16p14, 3' ... 351 9e-93 1
(BJ431515) Dictyostelium discoideum cDNA clone:ddv14o12, 3' ... 351 9e-93 1
(BJ429343) Dictyostelium discoideum cDNA clone:ddv3m01, 3' e... 351 9e-93 1
(BJ433854) Dictyostelium discoideum cDNA clone:ddv23k05, 3' ... 349 3e-92 1
(BJ435883) Dictyostelium discoideum cDNA clone:ddv28e24, 3' ... 345 5e-91 1
dna update 2009. 2.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54UF7) RecName: Full=Putative D-lactate dehydrogenase; ... 125 6e-28
CP000117_2647(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 79 4e-14
AB1814(AB1814) D-lactate dehydrogenase [imported] - Nostoc sp. (... 79 4e-14
CP001037_2271(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 78 1e-13
CP000749_2997(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 77 2e-13
AY313608_1(AY313608|pid:none) Mastigamoeba balamuthi putative D-... 76 3e-13
CP000450_1261(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 75 7e-13
AP006841_1461(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 72 5e-12
CP000140_1028(CP000140|pid:none) Parabacteroides distasonis ATCC... 72 6e-12
CR954210_148(CR954210|pid:none) Ostreococcus tauri strain OTTH05... 71 1e-11
protein update 2009. 6.23
PSORT

psg: 0.69 gvh: 0.43 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VFL133 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFL133Z
3' end seq.
>VFL133Z.Seq
NNNNNNNNNNTCATTACNCNCTCCATTGAATTNTCAAACTAAANANATGGTAAACTNTGA
ATCCNTCGAAAAAATNAAANATGGTGTTATGATTATCAACGTTTCAAAAGGNGCTTTAGT
TAANGCTTNTGANGCAANTGTTGGTTTAAAATCTGGTAAAANCAGTTCNCTTGGNATGGA
TGNCTATGAAAATGAAACCNATTACTTTTATCAAGATCCCAATGGNTCNATCNTTAAANA
TGANAATCNCNCTTTATTAATCTCTTANCCNAATGTTATGATCNCT
Length of 3' end seq. 286
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -