VFL116 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFL116
Library	VF (Link to library)
Clone ID	VFL116 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16269-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFL1-A/VFL116Q.Seq.d/
Representative seq. ID	VFL116E (Link to Original site)
Representative DNA sequence	>VFL116 (VFL116Q) /CSM/VF/VFL1-A/VFL116Q.Seq.d/ ATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAAACAAAG TTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATTTAGTTA ACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTCCATACG CTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTATTCCTC GTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGTGTAGAG GTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTAACGTCA ACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCCTCGTTA TGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAAT CCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCC TACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCA AGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTAAGACTACC GTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAAC TTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCCGCT TTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAAGGT TACACTCTCCCACGTCCAATGGTTGCTAACGCTGATATTGTCAGACTCGTCAACTCTGAT GAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTT CGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCGTC TCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAAAG AATCAATTAAGAGCTAAATNAGTTGCTGCCACTTTCAACCAATAAATTTTTAAATAGATT T
sequence update	2001.11.24
Translated Amino Acid sequence	ithkkllvhlskslmpktklvklssqmsppqsvqiltlstpttrmlvklmvllht lvnkpllnhgvlvvlslvflvfqvqvhtvqvkvpsvtcvevvvcmvqtrpgdvgivklts tkrdtllsqllpqlsqpslwlvvtesmvsmkshSLPTNPVDTLQKTKAAVELLKKINA YADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSRLN LLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMVANADIVRLVNSD EIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNPAAVSTRRTQVKSLKSKGIKVSKK NQLRAKXVAATFNQifk*i
Translated Amino Acid sequence (All Frames)	Frame A: ithkkllvhlskslmpktklvklssqmsppqsvqiltlstpttrmlvklmvllht lvnkpllnhgvlvvlslvflvfqvqvhtvqvkvpsvtcvevvvcmvqtrpgdvgivklts tkrdtllsqllpqlsqpslwlvvtesmvsmkshSLPTNPVDTLQKTKAAVELLKKINA YADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSRLN LLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMVANADIVRLVNSD EIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNPAAVSTRRTQVKSLKSKGIKVSKK NQLRAKXVAATFNQifki Frame B: shikndyssicpslcpkqscrsapkcldhpnpsrfslcphqlkqecssslwccsir wtnlcimgywsccrsysscsrfrytpfrsrclrhvrwsyvwskqdletlessrq pkeircclsfsclscpsprygswsqnqwyqspishcqripltpskkpklplnyrkstp tlmspksstpnifvlvlvkqetdvtksvkvhssslvrlpspkpyvtsqvlklptsqdst ynhqvvtvdsssglnplsnntqplvplpnhllkrkvtlshvqwlltlilsdsstlm ksklplepaksssnvqlpqfvvlthrtyvllntqppsqpvvlklnhnqkvsklakr inelnxllplstnkflnrf Frame C: htkmttrpfvqvfdaqnkvvgkvklpnvlttpirpdlvnfvhtnlnknarqaygaapya geqtsaeswgtgravariprvpgsgthrsgqgafgnmcrggrmygpnktwrrwnrkvnvn qkryavvsalaasavpalvmarghringinevplvianesrhppknqscriikenqrl rchqshrlqtyscwcwskkqtlqsprsisrrlwdyrlpslthprcscqrlktql ikistrwslrihhldirfrtirlnlwylcqiicskerlhsptsngcrycqtrql** npscrsqqsrrqtsncpsssfpikeltcydikpsrrlnpsyssiikikryqsqke siksxscchfqpinf*id
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFL116 (VFL116Q) /CSM/VF/VFL1-A/VFL116Q.Seq.d/ 2256 0.0 VFL284 (VFL284Q) /CSM/VF/VFL2-D/VFL284Q.Seq.d/ 2246 0.0 VFL809 (VFL809Q) /CSM/VF/VFL8-A/VFL809Q.Seq.d/ 2244 0.0 VFF381 (VFF381Q) /CSM/VF/VFF3-D/VFF381Q.Seq.d/ 2244 0.0 SFI443 (SFI443Q) /CSM/SF/SFI4-B/SFI443Q.Seq.d/ 2238 0.0 VFF765 (VFF765Q) /CSM/VF/VFF7-C/VFF765Q.Seq.d/ 2236 0.0 VFL609 (VFL609Q) /CSM/VF/VFL6-A/VFL609Q.Seq.d/ 2234 0.0 VFI846 (VFI846Q) /CSM/VF/VFI8-B/VFI846Q.Seq.d/ 2234 0.0 VFK789 (VFK789Q) /CSM/VF/VFK7-D/VFK789Q.Seq.d/ 2232 0.0 VHB796 (VHB796Q) /CSM/VH/VHB7-D/VHB796Q.Seq.d/ 2230 0.0
own update	2002.12.19
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ432529) Dictyostelium discoideum cDNA clone:ddv18p19, 3' ... 1441 0.0 1 (BJ432363) Dictyostelium discoideum cDNA clone:ddv18a13, 3' ... 1437 0.0 1 (BJ346913) Dictyostelium discoideum cDNA clone:dda25c17, 3' ... 1435 0.0 1 (BJ433871) Dictyostelium discoideum cDNA clone:ddv23o03, 3' ... 1409 0.0 1 (BJ428833) Dictyostelium discoideum cDNA clone:ddv1l12, 3' e... 1403 0.0 2 (BJ434483) Dictyostelium discoideum cDNA clone:ddv24b04, 3' ... 1396 0.0 1 (BJ434078) Dictyostelium discoideum cDNA clone:ddv23g22, 3' ... 1394 0.0 1 (BJ402555) Dictyostelium discoideum cDNA clone:dds17f12, 3' ... 1382 0.0 1 (BJ428388) Dictyostelium discoideum cDNA clone:ddv11b21, 3' ... 1378 0.0 1 (BJ430932) Dictyostelium discoideum cDNA clone:ddv9f09, 3' e... 1370 0.0 1
dna update	2009. 2.27
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value EF147296_1(EF147296\|pid:none) Populus trichocarpa clone WS0122_F... 204 2e-99 CP000595_105(CP000595\|pid:none) Ostreococcus lucimarinus CCE9901... 196 9e-96 EF676106_1(EF676106\|pid:none) Picea sitchensis clone WS02710_D09... 202 2e-95 AB236838_1(AB236838\|pid:none) Trifolium pratense RNA for putativ... 198 3e-95 AC123596_24(AC123596\|pid:none) Medicago truncatula clone mth1-17... 200 8e-95 (Q9SF40) RecName: Full=60S ribosomal protein L4-1; Shor... 194 3e-94 AC148756_18(AC148756\|pid:none) Medicago truncatula clone mth2-22... 197 5e-94 (P49691) RecName: Full=60S ribosomal protein L4-2; AltName: Full... 192 7e-94 AK117624_1(AK117624\|pid:none) Arabidopsis thaliana At5g02870 mRN... 190 3e-93 CP001333_223(CP001333\|pid:none) Micromonas sp. RCC299 chromosome... 184 1e-92
protein update	2009. 7.11
PSORT	psg: 0.75 gvh: 0.39 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00 nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 40.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: Golgi 4.0 %: vesicles of secretory system >> prediction for VFL116 is nuc
5' end seq. ID	VFL116F
5' end seq.	>VFL116F.Seq ATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAAACAAAG TTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATTTAGTTA ACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTCCATACG CTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTATTCCTC GTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGTGTAGAG GTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTAACGTCA ACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCCTCGTTA TGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAAT CCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCT ACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCAA GAAANNNNNNNNNN
Length of 5' end seq.	614
3' end seq. ID	VFL116Z
3' end seq.	>VFL116Z.Seq NNNNNNNNNNTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACG AATCCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAAC GCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAA GCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTAAGACT ACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTC AACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCC GCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAA GGTTACACTCTCCCACGTCCAATGGTTGCTAACGCTGATATTGTCAGACTCGTCAACTCT GATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCA GTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCC GTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAA AAGAATCAATTAAGAGCTAAATNAGTTGCTGCCACTTTCAACCAATAAATTTTTAAATAG ATTT
Length of 3' end seq.	724
Connected seq. ID	VFL116P
Connected seq.	>VFL116P.Seq ATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAAACAAAG TTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATTTAGTTA ACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTCCATACG CTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTATTCCTC GTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGTGTAGAG GTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTAACGTCA ACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCCTCGTTA TGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAAT CCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCT ACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCAA GAAA----------TGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCC AACGAATCCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAAT CAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGG TAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTAA GACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAG ACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAA ATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAA GAAAGGTTACACTCTCCCACGTCCAATGGTTGCTAACGCTGATATTGTCAGACTCGTCAA CTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGC CCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCCAGC CGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAG CAAAAAGAATCAATTAAGAGCTAAATNAGTTGCTGCCACTTTCAACCAATAAATTTTTAA ATAGATTT
Length of connected seq.	1318
Full length Seq ID	VFL116E
Full length Seq.	>VFL116E.Seq ATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAAACAAAG TTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATTTAGTTA ACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTCCATACG CTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTATTCCTC GTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGTGTAGAG GTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTAACGTCA ACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCCTCGTTA TGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAAT CCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCC TACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCA AGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTAAGACTACC GTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAAC TTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCCGCT TTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAAGGT TACACTCTCCCACGTCCAATGGTTGCTAACGCTGATATTGTCAGACTCGTCAACTCTGAT GAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTT CGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCGTC TCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAAAG AATCAATTAAGAGCTAAATNAGTTGCTGCCACTTTCAACCAATAAATTTTTAAATAGATT T
Length of full length seq.	1141

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas