VFL105 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFL105
Library	VF (Link to library)
Clone ID	VFL105 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U09710-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFL1-A/VFL105Q.Seq.d/
Representative seq. ID	VFL105P (Link to Original site)
Representative DNA sequence	>VFL105 (VFL105Q) /CSM/VF/VFL1-A/VFL105Q.Seq.d/ CACTGTTGGCCTACTGGATAAAGATCTCTTTGATTGGTTACAAAAACATGGTTTCGAACA ATACAAAGATGCTTTTTTAAAGGAAGAAATGTTTTTAGATGAATTGGGTGAAATGAGTGA AGATATTTTAAATAAAATGGGTATTACTTCTACTGGTACAAGATTAAGAATTTTAAAAGA AACTTCAAATTTAGCAAATGAACAAACAAAAAAACCAAAAACACCAGAACTTATAATAGA AGAAGATCCAACACCACCAGATACACCAGATATTAGTGGACTTAGACATTCATTACATAC ACTAAGACATGTTGGTGAAGTAAATATTATTAATGATAATGAGTTGGAGTATACTGAGAA ATTGGGTGCTGGTAGTTCTGGTAAAGTTTATAAAGGTTTATATAGAGGTAAAGAAGTTGC AATTAAAGTATTAAAATCAATGACTGAATCAAAAGAAATTGAAGAATTTAAAAAAGAATT CCAAATTATGAGTGCCATAAGATCGAAACATGTNGNNCATTTTTATGGNGCAGNATTGGA ACCAAAATTATGNNTGGNNATGGAAAATTGNNCANGAGGNNNNNNATNTCATGNNNTGGA TAATAAXXXXXXXXXXAAATGGGAAATAAAGGTTTGTGATTTTGGTTTAAGTCGTTTCAA NACAGGATCAAATTTANAAACATTGGTAAAAATNANAGGNACCTTTGCTTATTGTGCTCC ANAAGTTTATTATGGTGAACAATTNTCTGGTAAATNTGATGTTTACTCAATCGCTGTTAT CCTATGGGAATTGGTCNCAANATGTATAAATGGTANATATGAAAGACCTTTTTCANAANA TAANAATTTACAACATGATTTNCAAATTATTATTCAAACAGCAAANAAAAACCTTAGACC AACAANACCAAATGCATGTCCANAGTCATTGGTTTCATTGATTCAANANTGCTGGGATCC AAATCTCGAAAANAGACCAACNTGGACCGATATTTTAAGTAGATTGGTTACCNTTGAAAA TGAANANANAAGCAACATTCNAACNTGGAATAATTTAATTGNTCCNCTTCCAAANAATCA AGAATAAATCNATTGATTACATACNCTACNCCNATTAAANACTTTATAATCNCCNTCNAT CANACTAATTTACCNAAAATATTTATATTAATAAGTAAATAAATAAATAAACNAATAAA
sequence update	2001.11.22
Translated Amino Acid sequence	TVGLLDKDLFDWLQKHGFEQYKDAFLKEEMFLDELGEMSEDILNKMGITSTGTRLRILKE TSNLANEQTKKPKTPELIIEEDPTPPDTPDISGLRHSLHTLRHVGEVNIINDNELEYTEK LGAGSSGKVYKGLYRGKEVAIKVLKSMTESKEIEEFKKEFQIMSAIRSKHVXHFYGAXLE PKLXXXMENXXXGXXXHXXDN--- ---KWEIKVCDFGLSRFXTGSNLXTLVKXXGTFAYCAPXVYYGEQXSGKXDVYSIAVILW ELVXXCINGXYERPFSXXXNLQHDXQIIIQTAXKNLRPTXPNACPXSLVSLIQXCWDPNL EXRPTWTDILSRLVTXENEXXSNIXTWNNLIXPLPXNQEixlhtlxxlxtlspsixl iyxkylyvnkinx*
Translated Amino Acid sequence (All Frames)	Frame A: hcwptgrsllvtktwfrtiqrcffkgrnvfrigneryfkngyyfywykiknfkr nfkfsktnkktkntrtynrrrsnttrytrywttfitytktcwskyy***vgvye igcwfwslrfirrscnsikindikrnrikripnyechkietcxxflwxxig tkimxgxgklxxrxxxsxxg--- ---KWEIKVCDFGLSRFXTGSNLXTLVKXXGTFAYCAPXVYYGEQXSGKXDVYSIAVILW ELVXXCINGXYERPFSXXXNLQHDXQIIIQTAXKNLRPTXPNACPXSLVSLIQXCWDPNL EXRPTWTDILSRLVTXENEXXSNIXTWNNLIXPLPXNQEixlhtlxxlxtlspsixl iyxkyly*vnkinx* Frame B: TVGLLDKDLFDWLQKHGFEQYKDAFLKEEMFLDELGEMSEDILNKMGITSTGTRLRILKE TSNLANEQTKKPKTPELIIEEDPTPPDTPDISGLRHSLHTLRHVGEVNIINDNELEYTEK LGAGSSGKVYKGLYRGKEVAIKVLKSMTESKEIEEFKKEFQIMSAIRSKHVXHFYGAXLE PKLXXXMENXXXGXXXHXXDN--- ---ngkrfvilvvvsxqdqixkhwkxxxpllivlxkfimvnnxlvnxmftqsllsyg nwsqxvmvxmkdlfxxixiynmixkllfkqqxktldqqxqmhvxshwfhfxxagiqis kxdqxgpifvdwlplkmxxxatfxxgiilxxfqxiknksidyixyxxxlynxxxsx* ftxniyinkinktnk Frame C: llaywikisligyknmvsnntkmlfrkkcfmnwvkvkifikwvllllvqdefkk lqiqmnkqknqkhqnlkkiqhhqihqilvdldihyihdmlvkillmimswsilrn wvlvvlvkfikvyievkklqlkynqlnqkklknlkknsklvpdrnmxxifmxqxwn qnyxwxwkixxexxxxmxwii--- ---mgnkglfwfksfqxrikfxnigknxrxlcllcsxsllwtixwxcllnrcypmg igxxmykwxiktffxxxfttfxnyysnskxkptnxtkcmsxvigfidsxxlgsksr kxtnxdryfkigyxkxxkqhsnxefnxsxskxsrinxlityxtpikxfiixxxxtn lpkifiliskinkxi
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFL105 (VFL105Q) /CSM/VF/VFL1-A/VFL105Q.Seq.d/ 1421 0.0 SSG140 (SSG140Q) /CSM/SS/SSG1-B/SSG140Q.Seq.d/ 347 2e-94 VHC462 (VHC462Q) /CSM/VH/VHC4-C/VHC462Q.Seq.d/ 123 7e-27 SSM224 (SSM224Q) /CSM/SS/SSM2-A/SSM224Q.Seq.d/ 62 2e-08 AHG401 (AHG401Q) /CSM/AH/AHG4-A/AHG401Q.Seq.d/ 58 3e-07 AHF201 (AHF201Q) /CSM/AH/AHF2-A/AHF201Q.Seq.d/ 58 3e-07 VFN111 (VFN111Q) /CSM/VF/VFN1-A/VFN111Q.Seq.d/ 46 0.001 VHL442 (VHL442Q) /CSM/VH/VHL4-B/VHL442Q.Seq.d/ 44 0.005 VHL229 (VHL229Q) /CSM/VH/VHL2-B/VHL229Q.Seq.d/ 44 0.005 VFL735 (VFL735Q) /CSM/VF/VFL7-B/VFL735Q.Seq.d/ 44 0.005
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (AY353245) Dictyostelium discoideum stress-activated MEK-lik... 821 0.0 3 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 537 0.0 5 (BJ415605) Dictyostelium discoideum cDNA clone:ddv23i01, 5' ... 622 0.0 2 (U36938) Dictyostelium discoideum ankyrin repeat containing ... 488 0.0 3 (BJ433842) Dictyostelium discoideum cDNA clone:ddv23i01, 3' ... 829 0.0 1 (C90049) Dictyostelium discoideum slug cDNA, clone SSG140. 347 6e-91 1 (BJ437878) Dictyostelium discoideum cDNA clone:ddv35l16, 3' ... 70 6e-22 2 (BJ350772) Dictyostelium discoideum cDNA clone:dda41a02, 3' ... 58 6e-08 2 (BJ358180) Dictyostelium discoideum cDNA clone:dda43b02, 3' ... 58 7e-08 2 (AU074837) Dictyostelium discoideum slug cDNA, clone SSM224. 62 5e-05 1
dna update	2009. 2.27
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54XX5) RecName: Full=Probable serine/threonine-protein kinase ... 211 5e-53 (Q55GG4) RecName: Full=Probable serine/threonine-protein kinase ... 176 1e-42 (Q54HC6) RecName: Full=Ankyrin repeat-containing protein kinase ... 164 4e-39 (Q54RR9) RecName: Full=Probable serine/threonine-protein kinase ... 139 2e-31 (Q86HG9) RecName: Full=Probable serine/threonine-protein kinase ... 87 1e-15 (Q54RB7) RecName: Full=Dual specificity protein kinase shkA; ... 86 2e-15 BC171673_1(BC171673\|pid:none) Danio rerio protein kinase Npk, mR... 86 3e-15 AB049734_1(AB049734\|pid:none) Homo sapiens mRNA for MLTK-beta, c... 86 3e-15 (Q9NYE9) RecName: Full=Mitogen-activated protein kinase kinase k... 86 3e-15 AB049732_1(AB049732\|pid:none) Mus musculus mRNA for MLTK-beta, c... 86 3e-15
protein update	2009. 6.23
PSORT	psg: 0.75 gvh: 0.32 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 48.0 %: nuclear 4.0 %: plasma membrane >> prediction for VFL105 is cyt
5' end seq. ID	VFL105F
5' end seq.	>VFL105F.Seq CACTGTTGGCCTACTGGATAAAGATCTCTTTGATTGGTTACAAAAACATGGTTTCGAACA ATACAAAGATGCTTTTTTAAAGGAAGAAATGTTTTTAGATGAATTGGGTGAAATGAGTGA AGATATTTTAAATAAAATGGGTATTACTTCTACTGGTACAAGATTAAGAATTTTAAAAGA AACTTCAAATTTAGCAAATGAACAAACAAAAAAACCAAAAACACCAGAACTTATAATAGA AGAAGATCCAACACCACCAGATACACCAGATATTAGTGGACTTAGACATTCATTACATAC ACTAAGACATGTTGGTGAAGTAAATATTATTAATGATAATGAGTTGGAGTATACTGAGAA ATTGGGTGCTGGTAGTTCTGGTAAAGTTTATAAAGGTTTATATAGAGGTAAAGAAGTTGC AATTAAAGTATTAAAATCAATGACTGAATCAAAAGAAATTGAAGAATTTAAAAAAGAATT CCAAATTATGAGTGCCATAAGATCGAAACATGTNGNNCATTTTTATGGNGCAGNATTGGA ACCAAAATTATGNNTGGNNATGGAAAATTGNNCANGAGGNNNNNNATNTCATGNNNTGGA TAATAANNNNNNNNNN
Length of 5' end seq.	616
3' end seq. ID	VFL105Z
3' end seq.	>VFL105Z.Seq NNNNNNNNNNAAATGGGAAATAAAGGTTTGTGATTTTGGTTTAAGTCGTTTCAANACAGG ATCAAATTTANAAACATTGGTAAAAATNANAGGNACCTTTGCTTATTGTGCTCCANAAGT TTATTATGGTGAACAATTNTCTGGTAAATNTGATGTTTACTCAATCGCTGTTATCCTATG GGAATTGGTCNCAANATGTATAAATGGTANATATGAAAGACCTTTTTCANAANATAANAA TTTACAACATGATTTNCAAATTATTATTCAAACAGCAAANAAAAACCTTAGACCAACAAN ACCAAATGCATGTCCANAGTCATTGGTTTCATTGATTCAANANTGCTGGGATCCAAATCT CGAAAANAGACCAACNTGGACCGATATTTTAAGTAGATTGGTTACCNTTGAAAATGAANA NANAAGCAACATTCNAACNTGGAATAATTTAATTGNTCCNCTTCCAAANAATCAAGAATA AATCNATTGATTACATACNCTACNCCNATTAAANACTTTATAATCNCCNTCNATCANACT AATTTACCNAAAATATTTATATTAATAAGTAAATAAATAAATAAACNAATAAA
Length of 3' end seq.	593
Connected seq. ID	VFL105P
Connected seq.	>VFL105P.Seq CACTGTTGGCCTACTGGATAAAGATCTCTTTGATTGGTTACAAAAACATGGTTTCGAACA ATACAAAGATGCTTTTTTAAAGGAAGAAATGTTTTTAGATGAATTGGGTGAAATGAGTGA AGATATTTTAAATAAAATGGGTATTACTTCTACTGGTACAAGATTAAGAATTTTAAAAGA AACTTCAAATTTAGCAAATGAACAAACAAAAAAACCAAAAACACCAGAACTTATAATAGA AGAAGATCCAACACCACCAGATACACCAGATATTAGTGGACTTAGACATTCATTACATAC ACTAAGACATGTTGGTGAAGTAAATATTATTAATGATAATGAGTTGGAGTATACTGAGAA ATTGGGTGCTGGTAGTTCTGGTAAAGTTTATAAAGGTTTATATAGAGGTAAAGAAGTTGC AATTAAAGTATTAAAATCAATGACTGAATCAAAAGAAATTGAAGAATTTAAAAAAGAATT CCAAATTATGAGTGCCATAAGATCGAAACATGTNGNNCATTTTTATGGNGCAGNATTGGA ACCAAAATTATGNNTGGNNATGGAAAATTGNNCANGAGGNNNNNNATNTCATGNNNTGGA TAATAA----------AAATGGGAAATAAAGGTTTGTGATTTTGGTTTAAGTCGTTTCAA NACAGGATCAAATTTANAAACATTGGTAAAAATNANAGGNACCTTTGCTTATTGTGCTCC ANAAGTTTATTATGGTGAACAATTNTCTGGTAAATNTGATGTTTACTCAATCGCTGTTAT CCTATGGGAATTGGTCNCAANATGTATAAATGGTANATATGAAAGACCTTTTTCANAANA TAANAATTTACAACATGATTTNCAAATTATTATTCAAACAGCAAANAAAAACCTTAGACC AACAANACCAAATGCATGTCCANAGTCATTGGTTTCATTGATTCAANANTGCTGGGATCC AAATCTCGAAAANAGACCAACNTGGACCGATATTTTAAGTAGATTGGTTACCNTTGAAAA TGAANANANAAGCAACATTCNAACNTGGAATAATTTAATTGNTCCNCTTCCAAANAATCA AGAATAAATCNATTGATTACATACNCTACNCCNATTAAANACTTTATAATCNCCNTCNAT CANACTAATTTACCNAAAATATTTATATTAATAAGTAAATAAATAAATAAACNAATAAA
Length of connected seq.	1189
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas