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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM869
Library AF
(Link to library)
Clone ID AFM869
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM869P
(Link to Original site)
Representative DNA sequence 
>AFM869 (AFM869Q) /CSM/AF/AFM8-C/AFM869Q.Seq.d/
ATATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAATTT
GTTTTTTTTTTTTTATAATAATTAAATNGNGTAAAAAAAAAAGGXXXXXXXXXXAGGTNC
TCCACCCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCACCAC
CAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATG
ATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCAC
TCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTG
CAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACG
ATGATGAATGGTCAGATTATTAAATTATTCTTTAACAAAATTCAAATTCAAAAAAATCAT
TAAATAAAGATTTC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
iffnthffihii*FLVFIICFFFFIIIKXXKKKR---

---VLHPPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVD
KTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDDDEWSDY*iil*qnsn
skkslnkdf
Translated Amino Acid sequence (All Frames) 
Frame A:
ifflthtflyi*ysf*fl*fvfffl**lnxvkkk---

---rxsthhhhlhhhllvvhhlhhhqwpvllhhqevvvpaaveemifwlpfvvvqvlrll
ikpihsqifkvlvmkvhvl*lil*lqlwlivevv*ekmmkkmmmtmmngqiiklffnkiq
iqknh*iki

Frame B:
yff*htlfytynivfsfynlffffynn*xx*kkk---

---gxppttttstttf*wsttstttngqcssiirrwwcqrrwkk*sfgfhs*wcks*gc*
*nqstprysksw**rftffs*yfscsyg*s*rwyerr**rr***r**mvrllnysltkfk
fkkiik*rf

Frame C:
iffnthffihii*FLVFIICFFFFIIIKXXKKKR---

---VLHPPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVD
KTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDDDEWSDY*iil*qnsn
skkslnkdf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        410   e-114
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        410   e-114
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        410   e-114
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/                        410   e-114
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                        410   e-114
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/                        410   e-114
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/                        410   e-114
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/                        410   e-114
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/                        410   e-114
SFF823 (SFF823Q) /CSM/SF/SFF8-A/SFF823Q.Seq.d/                        410   e-114
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347276) Dictyostelium discoideum cDNA clone:dda26j18, 3' ...   404   e-128  3
(AU039202) Dictyostelium discoideum slug cDNA, clone SLH135.      404   e-128  3
(C89964) Dictyostelium discoideum slug cDNA, clone SSG705.        404   e-128  3
(AU039281) Dictyostelium discoideum slug cDNA, clone SLH341.      404   e-128  3
(AF305060) Dictyostelium discoideum Wiscott-Aldrich syndrome...   404   e-128  4
(BJ430702) Dictyostelium discoideum cDNA clone:ddv8l07, 3' e...   404   e-128  3
(BJ342636) Dictyostelium discoideum cDNA clone:dda14m22, 3' ...   404   e-127  3
(BJ398370) Dictyostelium discoideum cDNA clone:dds12n06, 3' ...   404   e-127  3
(BJ393918) Dictyostelium discoideum cDNA clone:dds33j05, 5' ...   404   e-126  3
(BJ400723) Dictyostelium discoideum cDNA clone:dds14a17, 3' ...   396   e-126  3
dna update 2009. 4.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...    83   4e-15
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso...    39   0.048
DQ985464_1(DQ985464|pid:none) Suberites domuncula Wiskott-Aldric...    32   7.7
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM869 is

5' end seq. ID AFM869F
5' end seq. 
>AFM869F.Seq
ATATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAATTT
GTTTTTTTTTTTTTATAATAATTAAATNGNGTAAAAAAAAAAGGXXXXXXXXXX
Length of 5' end seq. 114
3' end seq. ID AFM869Z
3' end seq. 
>AFM869Z.Seq
XXXXXXXXXXAGGTNCTCCACCCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCA
CCACCTCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGC
GGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTT
GATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTA
GCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAA
GAAGATGATGATGACGATGATGAATGGTCAGATTATTAAATTATTCTTTAACAAAATTCA
AATTCAAAAAAATCATTAAATAAAGATTTC
Length of 3' end seq. 390
Connected seq. ID AFM869P
Connected seq. 
>AFM869P.Seq
ATATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAATTT
GTTTTTTTTTTTTTATAATAATTAAATNGNGTAAAAAAAAAAGG----------AGGTNC
TCCACCCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCACCAC
CAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATG
ATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCAC
TCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTG
CAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACG
ATGATGAATGGTCAGATTATTAAATTATTCTTTAACAAAATTCAAATTCAAAAAAATCAT
TAAATAAAGATTTC
Length of connected seq. 484
Full length Seq ID -
Full length Seq. -
Length of full length seq. -