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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM861
Library AF
(Link to library)
Clone ID AFM861
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM861 (AFM861Q) /CSM/AF/AFM8-C/AFM861Q.Seq.d/
XXXXXXXXXXTCGAAGATGTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTC
TGTTGGGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAA
GTTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAA
AAAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAA
GTTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTT
GCCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAA
TTCTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGT
GAATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGAT
GTACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGAC
AAAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTC
ATTCAAGATAACGCTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTN
AATCTAAAAAAGATTCTTCTGCTAAACAGANAATTATAAATAATTAATAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---EDVKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEK
ETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEF
YAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDK
ENPISYEGQRNDHMNFVEFIQDNAAIEFKLPSSQTDDNVNLKKILLLNRXL*iink
Translated Amino Acid sequence (All Frames) 
Frame A:
---rrckenryltkr*crfllgryeeipttsnsygslw*scsshlc*fscq*sslqfr*k
rnlliryrlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*i
lrsmvrslqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**q
rksnll*rskk*syelc*ihsr*rch*iqitiisn***cxskkdssakqxiinn**


Frame B:
---EDVKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEK
ETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEF
YAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDK
ENPISYEGQRNDHMNFVEFIQDNAAIEFKLPSSQTDDNVNLKKILLLNRXL*iink


Frame C:
---km*rkslphkkvmpfsvgsi*rnshnkqliwvslvklfqpslliqlpiklvtismkk
kpshsipspngskmslvvkflhllnlnqnqnqmmlqlrlplvplskswf*thqrmfwlns
tlhgaviarillqstin*vnt*ktlnlsqs*rlmptqmmyqvisklevtqpscssklmtk
kiqslmkvkemii*tllnsfkitlplnsnyhhlklmimxi*krffc*txnyk*li
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN128 (AFN128Q) /CSM/AF/AFN1-B/AFN128Q.Seq.d/                       1378   0.0
AFM861 (AFM861Q) /CSM/AF/AFM8-C/AFM861Q.Seq.d/                       1378   0.0
AFM249 (AFM249Q) /CSM/AF/AFM2-C/AFM249Q.Seq.d/                       1378   0.0
AFK804 (AFK804Q) /CSM/AF/AFK8-A/AFK804Q.Seq.d/                       1378   0.0
AFK831 (AFK831Q) /CSM/AF/AFK8-B/AFK831Q.Seq.d/                       1376   0.0
AFM768 (AFM768Q) /CSM/AF/AFM7-C/AFM768Q.Seq.d/                       1372   0.0
AFM669 (AFM669Q) /CSM/AF/AFM6-C/AFM669Q.Seq.d/                       1372   0.0
AFM464 (AFM464Q) /CSM/AF/AFM4-C/AFM464Q.Seq.d/                       1372   0.0
AFM204 (AFM204Q) /CSM/AF/AFM2-A/AFM204Q.Seq.d/                       1372   0.0
AFL563 (AFL563Q) /CSM/AF/AFL5-C/AFL563Q.Seq.d/                       1372   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347511) Dictyostelium discoideum cDNA clone:dda27g07, 3' ...  1378   0.0    1
(BJ347275) Dictyostelium discoideum cDNA clone:dda26j16, 3' ...  1378   0.0    1
(BJ346899) Dictyostelium discoideum cDNA clone:dda25a14, 3' ...  1378   0.0    1
(BJ343120) Dictyostelium discoideum cDNA clone:dda22h02, 3' ...  1378   0.0    1
(BJ343231) Dictyostelium discoideum cDNA clone:dda22n08, 3' ...  1376   0.0    1
(BJ347271) Dictyostelium discoideum cDNA clone:dda26i18, 3' ...  1372   0.0    1
(BJ347265) Dictyostelium discoideum cDNA clone:dda26h17, 3' ...  1372   0.0    1
(BJ346972) Dictyostelium discoideum cDNA clone:dda25p16, 3' ...  1372   0.0    1
(BJ346795) Dictyostelium discoideum cDNA clone:dda25g02, 3' ...  1372   0.0    1
(BJ346679) Dictyostelium discoideum cDNA clone:dda24m15, 3' ...  1372   0.0    1
dna update 2009. 4.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q12730) RecName: Full=Protein disulfide-isomerase;          Sho...   173   5e-42
EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G...   173   5e-42
(Q00248) RecName: Full=Protein disulfide-isomerase;          Sho...   169   1e-40
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-...   168   2e-40
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul...   163   5e-39
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c...   162   9e-39
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos...   154   2e-36
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ...   151   2e-35
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet...   150   3e-35
BC046707_1(BC046707|pid:none) Xenopus laevis glucose regulated p...   150   3e-35
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM861 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM861Z
3' end seq. 
>AFM861Z.Seq
XXXXXXXXXXTCGAAGATGTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTC
TGTTGGGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAA
GTTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAA
AAAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAA
GTTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTT
GCCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAA
TTCTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGT
GAATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGAT
GTACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGAC
AAAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTC
ATTCAAGATAACGCTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTN
AATCTAAAAAAGATTCTTCTGCTAAACAGANAATTATAAATAATTAATAAA
Length of 3' end seq. 711
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -