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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFK766
Library VF
(Link to library)
Clone ID VFK766
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09260-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFK766 (VFK766Q) /CSM/VF/VFK7-C/VFK766Q.Seq.d/
XXXXXXXXXXGCAACAACAGCAGCAACAACAACANCAACAACAACAACAACAACAACAAC
ACCACCCACACCACCAACATCCAATACCACACCCACACCCACTCCCACATCAACTTCGTC
CACATCCACATCCCCACCATCCTCCACCACCACCATTCAACCCAATGTTAATGCAATTCA
ATCCAATGATGATGCCATTTGGGGAATGCCTCCACCTCCACCACATAAATAAATAAAATT
AATATTTTAAAAAC
sequence update 2001.11.22
Translated Amino Acid sequence 
---QQQQQQQXQQQQQQQQHHPHHQHPIPHPHPLPHQLRPHPHPHHPPPPPFNPMLMQFN
PMMMPFGECLHLHHINK*n*yfkn
Translated Amino Acid sequence (All Frames) 
Frame A:
---QQQQQQQXQQQQQQQQHHPHHQHPIPHPHPLPHQLRPHPHPHHPPPPPFNPMLMQFN
PMMMPFGECLHLHHINK*n*yfkn


Frame B:
---nnssnnnxnnnnnnnntthttniqyhththshinfvhihiptilhhhhstqc*cnsi
q**chlgnaststt*inkinilk


Frame C:
---ttaatttxttttttttpptpptsnttptptptstsststsppsstttiqpnvnaiqs
nddaiwgmppppphk*iklif*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFK766 (VFK766Q) /CSM/VF/VFK7-C/VFK766Q.Seq.d/                        196   1e-49
SLJ594 (SLJ594Q) /CSM/SL/SLJ5-D/SLJ594Q.Seq.d/                        168   3e-41
SLI783 (SLI783Q) /CSM/SL/SLI7-D/SLI783Q.Seq.d/                        168   3e-41
VHC383 (VHC383Q) /CSM/VH/VHC3-D/VHC383Q.Seq.d/                         38   0.061
VFK885 (VFK885Q) /CSM/VF/VFK8-D/VFK885Q.Seq.d/                         38   0.061
VFD739 (VFD739Q) /CSM/VF/VFD7-B/VFD739Q.Seq.d/                         38   0.061
VFC886 (VFC886Q) /CSM/VF/VFC8-D/VFC886Q.Seq.d/                         38   0.061
SSL524 (SSL524Q) /CSM/SS/SSL5-A/SSL524Q.Seq.d/                         38   0.061
SSK651 (SSK651Q) /CSM/SS/SSK6-C/SSK651Q.Seq.d/                         38   0.061
SSA810 (SSA810Q) /CSM/SS/SSA8-A/SSA810Q.Seq.d/                         38   0.061
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ433653) Dictyostelium discoideum cDNA clone:ddv22d17, 3' ...   178   6e-41  1
(AU053742) Dictyostelium discoideum slug cDNA, clone SLJ594.       86   1e-29  2
(AU053501) Dictyostelium discoideum slug cDNA, clone SLI783.       86   1e-29  2
(AC158039) Bos taurus clone CH240-64D19, WORKING DRAFT SEQUE...    62   1e-05  1
(AC182496) Bos taurus clone CH240-113D20, WORKING DRAFT SEQU...    62   1e-05  1
(AC173862) Bos taurus clone CH240-100C16, WORKING DRAFT SEQU...    62   1e-05  1
(AC160215) Atelerix albiventris clone LB4-204M24, WORKING DR...    60   4e-05  1
(AC157852) Atelerix albiventris clone LB4-260B7, WORKING DRA...    60   4e-05  1
(AC157851) Atelerix albiventris clone LB4-16J17, WORKING DRA...    60   4e-05  1
(AC203730) Atelerix albiventris clone LB4-171F3, complete se...    58   2e-04  1
dna update 2009. 2.25
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 163,039,477
protein update 2009. 6.23
PSORT 

 psg: 0.69  gvh: 0.33  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFK766 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFK766Z
3' end seq. 
>VFK766Z.Seq
NNNNNNNNNNGCAACAACAGCAGCAACAACAACANCAACAACAACAACAACAACAACAAC
ACCACCCACACCACCAACATCCAATACCACACCCACACCCACTCCCACATCAACTTCGTC
CACATCCACATCCCCACCATCCTCCACCACCACCATTCAACCCAATGTTAATGCAATTCA
ATCCAATGATGATGCCATTTGGGGAATGCCTCCACCTCCACCACATAAATAAATAAAATT
AATATTTTAAAAAC
Length of 3' end seq. 254
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -