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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM856
Library AF
(Link to library)
Clone ID AFM856
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM856P
(Link to Original site)
Representative DNA sequence 
>AFM856 (AFM856Q) /CSM/AF/AFM8-C/AFM856Q.Seq.d/
ATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAATATA
AAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTATATC
TATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATA
CATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAG
AATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCGTGTGCTAAAA
ACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTG
TACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTA
TGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTC
CAAGATGTGTTGGTCXXXXXXXXXXTTAGAGGTAATCCAACTTGTATTAAAGCAAGACCA
CCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGCATGTAATCACGTT
GGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCA
TCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCA
TCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACA
ACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCC
TCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCC
GCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGT
GCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCA
GAAAGCTCATCAGCCACTTCATAAATAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
sil*l*kkesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYT
CKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFV
PYHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVG---

---RGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICI
HPSTTAASTIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSS
AASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAASSAASSESSESSSAT
S*i
Translated Amino Acid sequence (All Frames) 
Frame A:
iqfcnykkrnqiiiyiyknikkik*efyi*llfyf*lhyiyhqllvgvvaeivkvivqni
hvnqievvhiyhlyhvvvrknfsvliviieivvmiyrvlktrelvkslrfgqvvnhieil
yhiihqiqphvnh*vvkqevwnvnglnhhhvmellvaqefqdvlv---

---leviqlvlkqdhryhhhiaqlvqsyhqhvitle*fvfkyqaivpildshvahliqfv
fihqllllqplqqlhqlsqlqplqllqvqqlvelqlvvqllivvllpqpivalpphhhqa
vllqvplqvnhqvaplqvvlhpllqvalhplpqvvlhhhqlqvqlhhqlqaqkaqkahqp
lhk*

Frame B:
fnfviikkgik*lyiyiki*kk*nenfifsfsfifnyiisitnfwlgwwqrl*kssfriy
m*ir*klcifticimlw*eriflc*s*s*kll**fivc*khenw*nl*dlvkl*tt*rfc
tisftkynhm*iirl*skrygm*mg*iitmlwnfllpknskmcw---

---*r*snly*skttgttttllnlcraiism*srwndlysstkqlyqy*ipmlpissnly
ssinyccfnhcnncincrnynlcnycrynnwwnynwwfnf***ccflsr**rcllitikq
ccfkcrfk*tik*rrfk*csilcfk*rsilclk*csiiisfkfsciiscklrklrklish
fink

Frame C:
sil*l*kkesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYT
CKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFV
PYHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVG---

---RGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICI
HPSTTAASTIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSS
AASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAASSAASSESSESSSAT
S*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/                       1078   0.0
VFA856 (VFA856Q) /CSM/VF/VFA8-C/VFA856Q.Seq.d/                       1078   0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                       1078   0.0
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/                       1078   0.0
SLG852 (SLG852Q) /CSM/SL/SLG8-C/SLG852Q.Seq.d/                       1078   0.0
SLG851 (SLG851Q) /CSM/SL/SLG8-C/SLG851Q.Seq.d/                       1078   0.0
SLG750 (SLG750Q) /CSM/SL/SLG7-C/SLG750Q.Seq.d/                       1078   0.0
SLG731 (SLG731Q) /CSM/SL/SLG7-B/SLG731Q.Seq.d/                       1078   0.0
SLG257 (SLG257Q) /CSM/SL/SLG2-C/SLG257Q.Seq.d/                       1078   0.0
SLE334 (SLE334Q) /CSM/SL/SLE3-B/SLE334Q.Seq.d/                       1078   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(D13973) Dictyostelium discoideum gene for Dp87 protein, com...  1078   0.0    1
(AU052267) Dictyostelium discoideum slug cDNA, clone SLA473.     1078   0.0    1
(AU052241) Dictyostelium discoideum slug cDNA, clone SLA408.     1078   0.0    1
(AU052233) Dictyostelium discoideum slug cDNA, clone SLA287.     1078   0.0    1
(AU052208) Dictyostelium discoideum slug cDNA, clone SLA244.     1078   0.0    1
(AU052205) Dictyostelium discoideum slug cDNA, clone SLA236.     1078   0.0    1
(AU039963) Dictyostelium discoideum slug cDNA, clone SLG852.     1078   0.0    1
(AU039962) Dictyostelium discoideum slug cDNA, clone SLG851.     1078   0.0    1
(AU039917) Dictyostelium discoideum slug cDNA, clone SLG750.     1078   0.0    1
(AU039913) Dictyostelium discoideum slug cDNA, clone SLG731.     1078   0.0    1
dna update 2009. 4.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       320   6e-86
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   316   7e-85
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...   126   7e-28
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    96   2e-18
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    63   2e-08
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid...    62   3e-08
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...    53   1e-05
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso...    48   5e-04
AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromoso...    47   8e-04
FJ501956_1(FJ501956|pid:none) Oryza sativa Indica Group keratin ...    40   0.002
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM856 is

5' end seq. ID AFM856F
5' end seq. 
>AFM856F.Seq
ATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAATATA
AAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTATATC
TATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATA
CATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAG
AATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCGTGTGCTAAAA
ACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTG
TACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTA
TGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTC
CAAGATGTGTTGGTCXXXXXXXXXX
Length of 5' end seq. 505
3' end seq. ID AFM856Z
3' end seq. 
>AFM856Z.Seq
XXXXXXXXXXTTAGAGGTAATCCAACTTGTATTAAAGCAAGACCACCGGTACCACCACCA
CATTGCTCAACTTGTGCAGAGCTATCATCAGCATGTAATCACGTTGGAATGATTTGTATT
CAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGT
ATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAACT
ACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACT
TCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGC
AGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCT
CCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCA
GCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCC
ACTTCATAAATAAA
Length of 3' end seq. 554
Connected seq. ID AFM856P
Connected seq. 
>AFM856P.Seq
ATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAATATA
AAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTATATC
TATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATA
CATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAG
AATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCGTGTGCTAAAA
ACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTG
TACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTA
TGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTC
CAAGATGTGTTGGTC----------TTAGAGGTAATCCAACTTGTATTAAAGCAAGACCA
CCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGCATGTAATCACGTT
GGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCA
TCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCA
TCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACA
ACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCC
TCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCC
GCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGT
GCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCA
GAAAGCTCATCAGCCACTTCATAAATAAA
Length of connected seq. 1039
Full length Seq ID -
Full length Seq. -
Length of full length seq. -