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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM842
Library AF
(Link to library)
Clone ID AFM842
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM842 (AFM842Q) /CSM/AF/AFM8-B/AFM842Q.Seq.d/
XXXXXXXXXXTGTTGGTGCTGGTCGTGTTGAACAACTCGATACTATTGCCACTGAATTCA
TCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTCAAGAAAGCTCAAACCGTCGTTGATT
CTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACTACGTCAAAGTCATGAAAACCATTG
CTGAAAAATCAATCGATTTTGTAACCACTGAAATCGCTCGTATCACCAAATTAGTCTCTG
GTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCAAGAAACTCAATATTTTAGAATCTT
TCAAATCAAAATAAATTAAATTTAATTTAGAAAATAAAAAATAAATAAAGAAAAAAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---VGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIA
EKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESFKSK*ikfnlenkk*ikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---VGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIA
EKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESFKSK*ikfnlenkk*ikkk


Frame B:
---lvlvvlnnsillplnsslpllksvrnssrklkpslilsqkn*elkvhttsks*kpll
knqsil*plkslvspn*slvqclerklmnlprnsif*nlsnqnklnli*kiknk*rkk


Frame C:
---wcwsc*ttryych*ihrcrc*sp*gtrqessnrr*fsprrikn*rfilrqshenhc*
kinrfcnh*nrsyhqislwfnvwkes**icqetqyfrifqikin*i*frk*kinkekk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF163 (VSF163Q) /CSM/VS/VSF1-C/VSF163Q.Seq.d/                        577   e-164
VFO821 (VFO821Q) /CSM/VF/VFO8-A/VFO821Q.Seq.d/                        577   e-164
VFO241 (VFO241Q) /CSM/VF/VFO2-B/VFO241Q.Seq.d/                        577   e-164
VFN359 (VFN359Q) /CSM/VF/VFN3-C/VFN359Q.Seq.d/                        577   e-164
VFN233 (VFN233Q) /CSM/VF/VFN2-B/VFN233Q.Seq.d/                        577   e-164
VFN206 (VFN206Q) /CSM/VF/VFN2-A/VFN206Q.Seq.d/                        577   e-164
VFM733 (VFM733Q) /CSM/VF/VFM7-B/VFM733Q.Seq.d/                        577   e-164
VFM578 (VFM578Q) /CSM/VF/VFM5-D/VFM578Q.Seq.d/                        577   e-164
VFM537 (VFM537Q) /CSM/VF/VFM5-B/VFM537Q.Seq.d/                        577   e-164
VFM151 (VFM151Q) /CSM/VF/VFM1-C/VFM151Q.Seq.d/                        577   e-164
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...   579   e-161  1
(AU284816) Dictyostelium discoideum gamete cDNA clone:FC-BL2...   579   e-161  1
(AU264805) Dictyostelium discoideum vegetative cDNA clone:VS...   579   e-161  1
(AU052445) Dictyostelium discoideum slug cDNA, clone SLD328.      579   e-161  1
(AU052332) Dictyostelium discoideum slug cDNA, clone SLD156.      579   e-161  1
(AU039302) Dictyostelium discoideum slug cDNA, clone SLH505.      579   e-161  1
(AU035020) Dictyostelium discoideum slug cDNA, clone SLE505.      579   e-161  1
(AU034838) Dictyostelium discoideum slug cDNA, clone SLE567.      579   e-161  1
(AU034824) Dictyostelium discoideum slug cDNA, clone SLE550.      579   e-161  1
(AU034445) Dictyostelium discoideum slug cDNA, clone SLC885.      579   e-161  1
dna update 2009. 4.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86IA3) RecName: Full=Protein disulfide-isomerase 1;          S...   162   2e-39
AF019112_1(AF019112|pid:none) Dictyostelium discoideum protein d...   160   1e-38
AE017341_67(AE017341|pid:none) Cryptococcus neoformans var. neof...    62   8e-09
AY730725_1(AY730725|pid:none) Entamoeba histolytica protein disu...    61   1e-08
AY739288_1(AY739288|pid:none) Zea mays protein disulfide isomera...    56   3e-07
EU966127_1(EU966127|pid:none) Zea mays clone 291908 PDIL2-2 - Ze...    56   3e-07
(P57759) RecName: Full=Endoplasmic reticulum protein ERp29; Flag...    56   4e-07
EF086125_1(EF086125|pid:none) Picea sitchensis clone WS0285_I21 ...    53   3e-06
(P81623) RecName: Full=Endoplasmic reticulum protein ERp29; Flag...    51   1e-05
BT039454_1(BT039454|pid:none) Zea mays full-length cDNA clone ZM...    51   1e-05
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM842 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM842Z
3' end seq. 
>AFM842Z.Seq
XXXXXXXXXXTGTTGGTGCTGGTCGTGTTGAACAACTCGATACTATTGCCACTGAATTCA
TCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTCAAGAAAGCTCAAACCGTCGTTGATT
CTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACTACGTCAAAGTCATGAAAACCATTG
CTGAAAAATCAATCGATTTTGTAACCACTGAAATCGCTCGTATCACCAAATTAGTCTCTG
GTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCAAGAAACTCAATATTTTAGAATCTT
TCAAATCAAAATAAATTAAATTTAATTTAGAAAATAAAAAATAAATAAAGAAAAAAAA
Length of 3' end seq. 358
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -