VFK513
Library VF
(Link to library)
Clone ID VFK513
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10137-1
Original site URL
Representative seq. ID VFK513P
(Link to Original site)
Representative DNA sequence
>VFK513 (VFK513Q) /CSM/VF/VFK5-A/VFK513Q.Seq.d/
TTTTAAAATATAAAAAAAAAAGAAACAAAAATATTTTATAGATGGCAGAATTAACAAATC
ATTTTAATAAAGTTAATGAACTTTTAAATGATTGGGATGGAGTTGGATTATCACATGAAT
TATCAATGACAGAATTAATTACCTCAATTTTAAATTCAATAAATCATAATAGTCATAGNG
GTATGAGTAATCAAAAGAAACAACAAATACAAGCAAAAGTTAATCAAATTAAAAAGACAG
ATTTAGTTGTTAAAAGACAACAAGATATAGATACATTATGTGCAAATAAAATTCAACACA
ACTATAATGAAATCGTTGCATATCGTTTAAGATCAATTTCATCATTATTAGATTCAAAAT
ATTATGATGCATTTAGATATTTAATTGAAGCTATAAATTCATTTGTTAAAGTATTTGAAT
TATGGTCACAAAATATATTATGGAGATTATCATTAGATTTACGTTTAATGGCAGAATTGG
CAACTTTAAATGTTGGTAGTAATGATAGTAATAATAGTAATAATAATGTTACGATTGATT
ATXXXXXXXXXXAGAATGCAGCATTAGGAGTTGTAANCCAATTATTTCAAATTTATTTTA
AAATTAATAATCTTAAACTTTGTAAAAATTTAATTAAAACTATGGAATCACCTGGTTTCC
CTACATTAGAGAGTTATCCTTTAAATCAAGTTATCACATATCGTTTCTTTAATGGTCGTT
TATCAGTTTTCAATGGTCAATATAAAAAAGCACAAGAAGAATTATTATATGCATTTAATA
AATGTCCAAATGATTCAATTAAAAATAAAAGATTAATATTATTATTTTTAGTACCAATGC
AATTAGAACAATGTAAATTCCCAAAGAAATCATTATTAGAGAAATTTAAGTTAACTCAAT
TCATTGATATTGTTCAATCTATAAAAAGTGGTAATATTAAACAATTTAATGAATGTTTGT
CAACTCATCAAAACTTTTTCATTTCAAAAGGTATCTATTTGATTTTAGAAAAATTGAAAA
TTATTGTCTATAGAAATCTATTTAAAAAGGTACATTTAATTACAACTGGTCAAAGAATTC
CAATTGGTAATTTCGTTTCCGCTTTGAAATGGATGGAAAATGATGCTATCGATATCGATG
AAACTGAATGTATTCTATCAAATTTAATTTATAATGGTTATCTTAAAGGTTATATCTCTC
ATAAAGTTGCTCTTGTTGTCTCTCCAACAAATCCTTTCCCAAAATTACCTTTAAATTAAA
AACNAAAAAAA
sequence update 2001.11.22
Translated Amino Acid sequence
lkykkkrnknil*MAELTNHFNKVNELLNDWDGVGLSHELSMTELITSILNSINHNSHXG
MSNQKKQQIQAKVNQIKKTDLVVKRQQDIDTLCANKIQHNYNEIVAYRLRSISSLLDSKY
YDAFRYLIEAINSFVKVFELWSQNILWRLSLDLRLMAELATLNVGSNDSNNSNNNVTIDY
---

---NAALGVVXQLFQIYFKINNLKLCKNLIKTMESPGFPTLESYPLNQVITYRFFNGRLS
VFNGQYKKAQEELLYAFNKCPNDSIKNKRLILLFLVPMQLEQCKFPKKSLLEKFKLTQFI
DIVQSIKSGNIKQFNECLSTHQNFFISKGIYLILEKLKIIVYRNLFKKVHLITTGQRIPI
GNFVSALKWMENDAIDIDETECILSNLIYNGYLKGYISHKVALVVSPTNPFPKLPLN*kx
kk


Translated Amino Acid sequence (All Frames)
Frame A:
f*nikkketkifyrwqn*qiiliklmnf*migmeldyhmnyq*qn*lpqf*iq*iiivix
v*vikrnnkykqkliklkrqi*llkdnki*ihyvqikfnttimkslhiv*dqfhhy*iqn
immhldi*lkl*ihllkylnyghkiyygdyh*iyv*wqnwql*mlvvmiviiviimlrli
---

---rmqh*el*xnyfkfilkliilnfvki*lklwnhlvslh*rvil*iklshivslmvvy
qfsmvnikkhkknyymhlinvqmiqlkikd*yyyf*yqcn*nnvnsqrnhy*rnls*lns
lilfnl*kvvilnnlmnvcqliktfsfqkvsi*f*kn*kllsieiylkryi*lqlvkefq
lvisfpl*ngwkmmlsismklnvfyqi*fimvilkvislikllllslqqilsqnyl*ikn
xk

Frame B:
fki*kkkkqkyfidgrinksf**s**tfk*lgwswiit*iindrinylnfkfnks**s*x
ye*skettntsks*sn*kdrfsc*kttryryimck*nstql**nrcisfkinfiiirfki
l*ci*ifn*sykfic*si*imvtkyimeiiirftfngrignfkcw**********cyd*l
---

---ecsirscxpiisnlf*n**s*tl*kfn*nygitwfpyirelsfkssyhisfl*wsfi
sfqwsi*kstrriiici**msk*fn*k*kiniiifstnairtm*ipkeiiirei*vnsih
*ycsiykkw*y*ti**mfvnssklfhfkrylfdfrkienycl*ksi*kgtfnynwsknsn
w*frfrfemdgk*cyryr*n*mysikfnl*wls*rlyls*scscclsnksfpkitfklkt
kk

Frame C:
lkykkkrnknil*MAELTNHFNKVNELLNDWDGVGLSHELSMTELITSILNSINHNSHXG
MSNQKKQQIQAKVNQIKKTDLVVKRQQDIDTLCANKIQHNYNEIVAYRLRSISSLLDSKY
YDAFRYLIEAINSFVKVFELWSQNILWRLSLDLRLMAELATLNVGSNDSNNSNNNVTIDY
---

---NAALGVVXQLFQIYFKINNLKLCKNLIKTMESPGFPTLESYPLNQVITYRFFNGRLS
VFNGQYKKAQEELLYAFNKCPNDSIKNKRLILLFLVPMQLEQCKFPKKSLLEKFKLTQFI
DIVQSIKSGNIKQFNECLSTHQNFFISKGIYLILEKLKIIVYRNLFKKVHLITTGQRIPI
GNFVSALKWMENDAIDIDETECILSNLIYNGYLKGYISHKVALVVSPTNPFPKLPLN*kx
kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK513 (VFK513Q) /CSM/VF/VFK5-A/VFK513Q.Seq.d/ 2379 0.0
VFG804 (VFG804Q) /CSM/VF/VFG8-A/VFG804Q.Seq.d/ 1392 0.0
VFC636 (VFC636Q) /CSM/VF/VFC6-B/VFC636Q.Seq.d/ 1384 0.0
SFG590 (SFG590Q) /CSM/SF/SFG5-D/SFG590Q.Seq.d/ 1370 0.0
AFM739 (AFM739Q) /CSM/AF/AFM7-B/AFM739Q.Seq.d/ 1364 0.0
SFD416 (SFD416Q) /CSM/SF/SFD4-A/SFD416Q.Seq.d/ 1281 0.0
SFA833 (SFA833Q) /CSM/SF/SFA8-B/SFA833Q.Seq.d/ 182 9e-45
VSI223 (VSI223Q) /CSM/VS/VSI2-A/VSI223Q.Seq.d/ 56 1e-06
VFK637 (VFK637Q) /CSM/VF/VFK6-B/VFK637Q.Seq.d/ 54 5e-06
SSG658 (SSG658Q) /CSM/SS/SSG6-C/SSG658Q.Seq.d/ 54 5e-06

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 52 1e-18 21
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 46 2e-18 24
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 48 8e-18 19
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 56 2e-17 16
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 40 5e-17 25
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 42 6e-17 26
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 56 1e-16 20
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence. 44 1e-15 23
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 54 1e-15 22
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 54 3e-15 16
dna update 2003.10.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54PX7) RecName: Full=PCI domain-containing protein 2 homolog; ... 731 0.0
(Q5FWP8) RecName: Full=PCI domain-containing protein 2; AltName:... 223 1e-56
BT058705_1(BT058705|pid:none) Salmo salar clone Contig3580 PCI d... 219 2e-55
CP001327_560(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 217 6e-55
BT049241_1(BT049241|pid:none) Salmo salar clone ssal-eve-503-255... 217 6e-55
BC031246_1(BC031246|pid:none) Homo sapiens PCI domain containing... 216 1e-54
(Q8BFV2) RecName: Full=PCI domain-containing protein 2; AltName:... 216 1e-54
BC006047_1(BC006047|pid:none) Mus musculus PCI domain containing... 216 1e-54
BT074722_1(BT074722|pid:none) Osmerus mordax clone omor-rgc-513-... 215 2e-54
AL137002_17(AL137002|pid:none) Human DNA sequence from clone RP1... 214 4e-54
protein update 2009. 6.22
PSORT

psg: 0.58 gvh: 0.37 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VFK513 is cyt

5' end seq. ID VFK513F
5' end seq.
>VFK513F.Seq
TTTTAAAATATAAAAAAAAAAGAAACAAAAATATTTTATAGATGGCAGAATTAACAAATC
ATTTTAATAAAGTTAATGAACTTTTAAATGATTGGGATGGAGTTGGATTATCACATGAAT
TATCAATGACAGAATTAATTACCTCAATTTTAAATTCAATAAATCATAATAGTCATAGNG
GTATGAGTAATCAAAAGAAACAACAAATACAAGCAAAAGTTAATCAAATTAAAAAGACAG
ATTTAGTTGTTAAAAGACAACAAGATATAGATACATTATGTGCAAATAAAATTCAACACA
ACTATAATGAAATCGTTGCATATCGTTTAAGATCAATTTCATCATTATTAGATTCAAAAT
ATTATGATGCATTTAGATATTTAATTGAAGCTATAAATTCATTTGTTAAAGTATTTGAAT
TATGGTCACAAAATATATTATGGAGATTATCATTAGATTTACGTTTAATGGCAGAATTGG
CAACTTTAAATGTTGGTAGTAATGATAGTAATAATAGTAATAATAATGTTACGATTGATT
ATNNNNNNNNNN
Length of 5' end seq. 552
3' end seq. ID VFK513Z
3' end seq.
>VFK513Z.Seq
NNNNNNNNNNAGAATGCAGCATTAGGAGTTGTAANCCAATTATTTCAAATTTATTTTAAA
ATTAATAATCTTAAACTTTGTAAAAATTTAATTAAAACTATGGAATCACCTGGTTTCCCT
ACATTAGAGAGTTATCCTTTAAATCAAGTTATCACATATCGTTTCTTTAATGGTCGTTTA
TCAGTTTTCAATGGTCAATATAAAAAAGCACAAGAAGAATTATTATATGCATTTAATAAA
TGTCCAAATGATTCAATTAAAAATAAAAGATTAATATTATTATTTTTAGTACCAATGCAA
TTAGAACAATGTAAATTCCCAAAGAAATCATTATTAGAGAAATTTAAGTTAACTCAATTC
ATTGATATTGTTCAATCTATAAAAAGTGGTAATATTAAACAATTTAATGAATGTTTGTCA
ACTCATCAAAACTTTTTCATTTCAAAAGGTATCTATTTGATTTTAGAAAAATTGAAAATT
ATTGTCTATAGAAATCTATTTAAAAAGGTACATTTAATTACAACTGGTCAAAGAATTCCA
ATTGGTAATTTCGTTTCCGCTTTGAAATGGATGGAAAATGATGCTATCGATATCGATGAA
ACTGAATGTATTCTATCAAATTTAATTTATAATGGTTATCTTAAAGGTTATATCTCTCAT
AAAGTTGCTCTTGTTGTCTCTCCAACAAATCCTTTCCCAAAATTACCTTTAAATTAAAAA
CNAAAAAAA
Length of 3' end seq. 729
Connected seq. ID VFK513P
Connected seq.
>VFK513P.Seq
TTTTAAAATATAAAAAAAAAAGAAACAAAAATATTTTATAGATGGCAGAATTAACAAATC
ATTTTAATAAAGTTAATGAACTTTTAAATGATTGGGATGGAGTTGGATTATCACATGAAT
TATCAATGACAGAATTAATTACCTCAATTTTAAATTCAATAAATCATAATAGTCATAGNG
GTATGAGTAATCAAAAGAAACAACAAATACAAGCAAAAGTTAATCAAATTAAAAAGACAG
ATTTAGTTGTTAAAAGACAACAAGATATAGATACATTATGTGCAAATAAAATTCAACACA
ACTATAATGAAATCGTTGCATATCGTTTAAGATCAATTTCATCATTATTAGATTCAAAAT
ATTATGATGCATTTAGATATTTAATTGAAGCTATAAATTCATTTGTTAAAGTATTTGAAT
TATGGTCACAAAATATATTATGGAGATTATCATTAGATTTACGTTTAATGGCAGAATTGG
CAACTTTAAATGTTGGTAGTAATGATAGTAATAATAGTAATAATAATGTTACGATTGATT
AT----------AGAATGCAGCATTAGGAGTTGTAANCCAATTATTTCAAATTTATTTTA
AAATTAATAATCTTAAACTTTGTAAAAATTTAATTAAAACTATGGAATCACCTGGTTTCC
CTACATTAGAGAGTTATCCTTTAAATCAAGTTATCACATATCGTTTCTTTAATGGTCGTT
TATCAGTTTTCAATGGTCAATATAAAAAAGCACAAGAAGAATTATTATATGCATTTAATA
AATGTCCAAATGATTCAATTAAAAATAAAAGATTAATATTATTATTTTTAGTACCAATGC
AATTAGAACAATGTAAATTCCCAAAGAAATCATTATTAGAGAAATTTAAGTTAACTCAAT
TCATTGATATTGTTCAATCTATAAAAAGTGGTAATATTAAACAATTTAATGAATGTTTGT
CAACTCATCAAAACTTTTTCATTTCAAAAGGTATCTATTTGATTTTAGAAAAATTGAAAA
TTATTGTCTATAGAAATCTATTTAAAAAGGTACATTTAATTACAACTGGTCAAAGAATTC
CAATTGGTAATTTCGTTTCCGCTTTGAAATGGATGGAAAATGATGCTATCGATATCGATG
AAACTGAATGTATTCTATCAAATTTAATTTATAATGGTTATCTTAAAGGTTATATCTCTC
ATAAAGTTGCTCTTGTTGTCTCTCCAACAAATCCTTTCCCAAAATTACCTTTAAATTAAA
AACNAAAAAAA
Length of connected seq. 1261
Full length Seq ID -
Full length Seq. -
Length of full length seq. -