AFM825
Library AF
(Link to library)
Clone ID AFM825
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM825P
(Link to Original site)
Representative DNA sequence
>AFM825 (AFM825Q) /CSM/AF/AFM8-B/AFM825Q.Seq.d/
AACTAAATTAAATAAATAATAAAATAAAAAAATAAAAAAAATGAGGATAAATAATTTATT
AGTATGTTTGGTTTTAGTTTTCTCAACATTATCAATTAGTAATGCAAATCCGGAACATGA
TAAATGGTGGAAACCTCCTCCTAGAAATTGTGATAGTTTGTCAGAGGACCAATGTAAAGC
ACCAAATTCTGGTTGTAAGTATTTACCTTTTGTTTCATGTTGTGGTACAAAGAAATTCTT
TTGTGTAGAAGATAATGGAAATGGTTGTGGAAATGCTCCATTAAGTTGTATGAAAGATTC
AAAAACCGATGCAATTTATGAGATTTGGAGTTCATGTAGACCAAATTCACCATTTTTATA
TGATTATCAAGTTAGAAATGAAACTTGTGATCAAAAGCTATGTGAAGCAAGTGGAGGAGT
TTGTGAATGGGTTGACCCAGTACCATGTATGGGTACATCATGTTGTCCACGTTATCCAGT
TTGTAAGGGTGGTGGTGGCGGTGGTGGACCAGTCTCACCATGTAAGAATGTAATTTGTCC
AXXXXXXXXXXATTGTGTAGAATGTGAAGAAAAGGAATGCGAGCATCACCATTGTCCACC
AGGATATGATTGCGTGGTCGACTCTCACCATCGTCCACATTGCCAAAGACCAAATCCAGG
CTCATTATGTCGTAATGTAACTTGTCCATATGGCTATGTTTGCAAGGCAATTAATAATCT
TCCAACATGTATTCGTAATCCATTACCACCAAACTACCCATGTAGAGATTTACATTGCCC
ATNTGGATACTCTTGCGAAATCATCAATGATCTCCCATCATGCGTAAGAGAAACCCATCC
AGGTCATTGTAAAACTTGTCATGATGTTAATTGTGGTTCATTGGATTGCGCAATGGTTCC
TAATAAATGTCCAANAGGTTCTCGTGACTGCTGTATTCAAATTCCATCGTGTCGTTTACC
ATCAAATTCTAATGATGATTATGATAATGATCCTAATGGATATGATGATAATGAAAATGA
GGGTGATGGATTATCAATTCCATGTGGCCCAATTATCACTTGTAAATTAAATGAAATTTG
TTTATTAGAACAATCNCGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCNCCAGGAAC
TAAATGTGTTGCTGANACAACTGGAATTCCAGTTTGTTTACCAAAGGAATAACNCCATAT
TAAATTTAAATAAAAAAAAAATATA
sequence update 2009. 4. 3
Translated Amino Acid sequence
tklnk**NKKIKKMRINNLLVCLVLVFSTLSISNANPEHDKWWKPPPRNCDSLSEDQCKA
PNSGCKYLPFVSCCGTKKFFCVEDNGNGCGNAPLSCMKDSKTDAIYEIWSSCRPNSPFLY
DYQVRNETCDQKLCEASGGVCEWVDPVPCMGTSCCPRYPVCKGGGGGGGPVSPCKNVICP
---

---CVECEEKECEHHHCPPGYDCVVDSHHRPHCQRPNPGSLCRNVTCPYGYVCKAINNLP
TCIRNPLPPNYPCRDLHCPXGYSCEIINDLPSCVRETHPGHCKTCHDVNCGSLDCAMVPN
KCPXGSRDCCIQIPSCRLPSNSNDDYDNDPNGYDDNENEGDGLSIPCGPIITCKLNEICL
LEQSRCAPLCEFVKCSPGTKCVAXTTGIPVCLPKE*xhikfk*kkni


Translated Amino Acid sequence (All Frames)
Frame A:
n*ik*iik*knkknedk*fismfgfsflniin**cksgt**mvetss*kl**fvrgpm*s
tkfwl*vftfcfmlwykeillcrr*wkwlwkcsiklyerfknrcnl*dlefm*tkftifi
*lss*k*nl*skam*skwrsl*mg*pstmygyimlstlssl*gwwwrwwtsltm*ecnls
---

---iv*nvkkrnasitivhqdmiawstltivhiakdqiqahyvvm*lvhmamfarqliif
qhvfvihyhqtthveiyiahxdtlakssmishha*ekpiqvivklvmmlivvhwiaqwfl
invqxvlvtavfkfhrvvyhqilmmimimilmdmmimkmrvmdyqfhvaqlslvn*mkfv
y*nnxvvphyvnl*nvxqelnvllxqlefqfvyqrnnxilnlnkkki

Frame B:
tklnk**NKKIKKMRINNLLVCLVLVFSTLSISNANPEHDKWWKPPPRNCDSLSEDQCKA
PNSGCKYLPFVSCCGTKKFFCVEDNGNGCGNAPLSCMKDSKTDAIYEIWSSCRPNSPFLY
DYQVRNETCDQKLCEASGGVCEWVDPVPCMGTSCCPRYPVCKGGGGGGGPVSPCKNVICP
---

---lcrm*rkgmrasplstri*lrgrlspsstlpktksrlims*cnlsiwlclqgn**ss
nmys*sittklpm*rftlpxwillrnhq*spimrkrnpsrsl*nls*c*lwfiglrngs*
*msxrfs*llysnsivsftikf***l***s*wi****k*g*wiinsmwpnyhl*ik*nlf
irtixlcpim*ickmfxrn*mcc*xnwnsslftkgitpy*i*ikkky

Frame C:
ln*innkikk*kk*g*iiy*yvwf*fsqhyqlvmqirnminggnllleivivcqrtnvkh
qilvvsiyllfhvvvqrnsfv*kimemvvemlh*vv*kiqkpmqfmrfgvhvdqihhfym
iiklemklviksyvkqveefvngltqyhvwvhhvvhviqfvrvvvavvdqshhvrm*fv-
--

---CVECEEKECEHHHCPPGYDCVVDSHHRPHCQRPNPGSLCRNVTCPYGYVCKAINNLP
TCIRNPLPPNYPCRDLHCPXGYSCEIINDLPSCVRETHPGHCKTCHDVNCGSLDCAMVPN
KCPXGSRDCCIQIPSCRLPSNSNDDYDNDPNGYDDNENEGDGLSIPCGPIITCKLNEICL
LEQSRCAPLCEFVKCSPGTKCVAXTTGIPVCLPKE*xhikfk*kkni

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE226 (SLE226Q) /CSM/SL/SLE2-B/SLE226Q.Seq.d/ 991 0.0
SFE669 (SFE669Q) /CSM/SF/SFE6-C/SFE669Q.Seq.d/ 991 0.0
CHC584 (CHC584Q) /CSM/CH/CHC5-D/CHC584Q.Seq.d/ 991 0.0
CFG712 (CFG712Q) /CSM/CF/CFG7-A/CFG712Q.Seq.d/ 991 0.0
CFF677 (CFF677Q) /CSM/CF/CFF6-D/CFF677Q.Seq.d/ 991 0.0
CFF190 (CFF190Q) /CSM/CF/CFF1-D/CFF190Q.Seq.d/ 991 0.0
CFE212 (CFE212Q) /CSM/CF/CFE2-A/CFE212Q.Seq.d/ 991 0.0
CFB770 (CFB770Q) /CSM/CF/CFB7-C/CFB770Q.Seq.d/ 991 0.0
CFB214 (CFB214Q) /CSM/CF/CFB2-A/CFB214Q.Seq.d/ 991 0.0
AHA738 (AHA738Q) /CSM/AH/AHA7-B/AHA738Q.Seq.d/ 991 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039509) Dictyostelium discoideum slug cDNA, clone SLA763. 817 0.0 3
(AU039487) Dictyostelium discoideum slug cDNA, clone SLH875. 817 0.0 3
(BJ400403) Dictyostelium discoideum cDNA clone:dds13j02, 3' ... 817 0.0 2
(BJ347267) Dictyostelium discoideum cDNA clone:dda26i13, 3' ... 817 0.0 2
(BJ347144) Dictyostelium discoideum cDNA clone:dda26b08, 3' ... 817 0.0 2
(BJ346924) Dictyostelium discoideum cDNA clone:dda25f14, 3' ... 817 0.0 3
(BJ346818) Dictyostelium discoideum cDNA clone:dda25m01, 3' ... 817 0.0 3
(BJ343757) Dictyostelium discoideum cDNA clone:dda17g03, 3' ... 817 0.0 2
(BJ342172) Dictyostelium discoideum cDNA clone:dda9e19, 3' e... 817 0.0 2
(BJ341664) Dictyostelium discoideum cDNA clone:dda7k14, 3' e... 817 0.0 2
dna update 2009. 4.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 613 e-174
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 185 2e-45
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 182 3e-44
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 105 4e-21
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 92 3e-17
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 90 1e-16
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 61 9e-08
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName... 60 2e-07
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 59 3e-07
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 52 4e-05
protein update 2009. 4. 6
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM825 is

5' end seq. ID AFM825F
5' end seq.
>AFM825F.Seq
AACTAAATTAAATAAATAATAAAATAAAAAAATAAAAAAAATGAGGATAAATAATTTATT
AGTATGTTTGGTTTTAGTTTTCTCAACATTATCAATTAGTAATGCAAATCCGGAACATGA
TAAATGGTGGAAACCTCCTCCTAGAAATTGTGATAGTTTGTCAGAGGACCAATGTAAAGC
ACCAAATTCTGGTTGTAAGTATTTACCTTTTGTTTCATGTTGTGGTACAAAGAAATTCTT
TTGTGTAGAAGATAATGGAAATGGTTGTGGAAATGCTCCATTAAGTTGTATGAAAGATTC
AAAAACCGATGCAATTTATGAGATTTGGAGTTCATGTAGACCAAATTCACCATTTTTATA
TGATTATCAAGTTAGAAATGAAACTTGTGATCAAAAGCTATGTGAAGCAAGTGGAGGAGT
TTGTGAATGGGTTGACCCAGTACCATGTATGGGTACATCATGTTGTCCACGTTATCCAGT
TTGTAAGGGTGGTGGTGGCGGTGGTGGACCAGTCTCACCATGTAAGAATGTAATTTGTCC
AXXXXXXXXXX
Length of 5' end seq. 551
3' end seq. ID AFM825Z
3' end seq.
>AFM825Z.Seq
XXXXXXXXXXATTGTGTAGAATGTGAAGAAAAGGAATGCGAGCATCACCATTGTCCACCA
GGATATGATTGCGTGGTCGACTCTCACCATCGTCCACATTGCCAAAGACCAAATCCAGGC
TCATTATGTCGTAATGTAACTTGTCCATATGGCTATGTTTGCAAGGCAATTAATAATCTT
CCAACATGTATTCGTAATCCATTACCACCAAACTACCCATGTAGAGATTTACATTGCCCA
TNTGGATACTCTTGCGAAATCATCAATGATCTCCCATCATGCGTAAGAGAAACCCATCCA
GGTCATTGTAAAACTTGTCATGATGTTAATTGTGGTTCATTGGATTGCGCAATGGTTCCT
AATAAATGTCCAANAGGTTCTCGTGACTGCTGTATTCAAATTCCATCGTGTCGTTTACCA
TCAAATTCTAATGATGATTATGATAATGATCCTAATGGATATGATGATAATGAAAATGAG
GGTGATGGATTATCAATTCCATGTGGCCCAATTATCACTTGTAAATTAAATGAAATTTGT
TTATTAGAACAATCNCGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCNCCAGGAACT
AAATGTGTTGCTGANACAACTGGAATTCCAGTTTGTTTACCAAAGGAATAACNCCATATT
AAATTTAAATAAAAAAAAAATATA
Length of 3' end seq. 684
Connected seq. ID AFM825P
Connected seq.
>AFM825P.Seq
AACTAAATTAAATAAATAATAAAATAAAAAAATAAAAAAAATGAGGATAAATAATTTATT
AGTATGTTTGGTTTTAGTTTTCTCAACATTATCAATTAGTAATGCAAATCCGGAACATGA
TAAATGGTGGAAACCTCCTCCTAGAAATTGTGATAGTTTGTCAGAGGACCAATGTAAAGC
ACCAAATTCTGGTTGTAAGTATTTACCTTTTGTTTCATGTTGTGGTACAAAGAAATTCTT
TTGTGTAGAAGATAATGGAAATGGTTGTGGAAATGCTCCATTAAGTTGTATGAAAGATTC
AAAAACCGATGCAATTTATGAGATTTGGAGTTCATGTAGACCAAATTCACCATTTTTATA
TGATTATCAAGTTAGAAATGAAACTTGTGATCAAAAGCTATGTGAAGCAAGTGGAGGAGT
TTGTGAATGGGTTGACCCAGTACCATGTATGGGTACATCATGTTGTCCACGTTATCCAGT
TTGTAAGGGTGGTGGTGGCGGTGGTGGACCAGTCTCACCATGTAAGAATGTAATTTGTCC
A----------ATTGTGTAGAATGTGAAGAAAAGGAATGCGAGCATCACCATTGTCCACC
AGGATATGATTGCGTGGTCGACTCTCACCATCGTCCACATTGCCAAAGACCAAATCCAGG
CTCATTATGTCGTAATGTAACTTGTCCATATGGCTATGTTTGCAAGGCAATTAATAATCT
TCCAACATGTATTCGTAATCCATTACCACCAAACTACCCATGTAGAGATTTACATTGCCC
ATNTGGATACTCTTGCGAAATCATCAATGATCTCCCATCATGCGTAAGAGAAACCCATCC
AGGTCATTGTAAAACTTGTCATGATGTTAATTGTGGTTCATTGGATTGCGCAATGGTTCC
TAATAAATGTCCAANAGGTTCTCGTGACTGCTGTATTCAAATTCCATCGTGTCGTTTACC
ATCAAATTCTAATGATGATTATGATAATGATCCTAATGGATATGATGATAATGAAAATGA
GGGTGATGGATTATCAATTCCATGTGGCCCAATTATCACTTGTAAATTAAATGAAATTTG
TTTATTAGAACAATCNCGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCNCCAGGAAC
TAAATGTGTTGCTGANACAACTGGAATTCCAGTTTGTTTACCAAAGGAATAACNCCATAT
TAAATTTAAATAAAAAAAAAATATA
Length of connected seq. 1215
Full length Seq ID -
Full length Seq. -
Length of full length seq. -