VFK405 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFK405
Library	VF (Link to library)
Clone ID	VFK405 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15070-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFK4-A/VFK405Q.Seq.d/
Representative seq. ID	VFK405E (Link to Original site)
Representative DNA sequence	>VFK405 (VFK405Q) /CSM/VF/VFK4-A/VFK405Q.Seq.d/ ATTAAATTTAATATGACACCAGTTATCACAGCATTTTTATCGTTTGCATTTCTTTGTTTT GCATCTTGGTGTGTTGGTGAAGGTGGTGAAATCCTTGGTAAGAAATATGATGCCTCAATT ATTGGTGGTCTAATTATAGCTTGGTTAAATACAGCACCAGAAGCAATTTTCTTTATAACA GCATTAACAAGTGATAATACAAGATTTGCAGTTGGAGCAGTTAGTGGTAGTAGTATTGTA GTTTGTACAGTAGCGTTGGGATGTTGTATAGTTTTAGGTACAAGAAATAGAAAAGGTGGA TCATTTCAATTACAACCACCAGTTAAAAAGCAATGTTTAATTTTACTATTATCATTATTG ATACCATTATTCTTATCATTGGTTGGATATAATGTTTTCTTTGGTATTTTCGGAATAATC TATTATTTAATATTCATTGGATATTCATTATTTCATAAATTACCAGAAGACGAGAAAAAA GAAGATCGTGATATTGAAATGGGTGAAAGAAAGAATGGTGCAAATGAACAAACGACAGCA TCAACAACAGCATCATCAACAGAATCCGACGACGAAGACACCGATGAAGAAGATGAACAT GACGAACCATTATATAAAGGTGTATTTTATTTATTTTTAGGTGGTCTTTTAATTTGTTAC TTTAGTAAACCATTCATTGACTCAATTGTATCATTAGCATCATCTTGGGAAATTAATCCA ATNTTATTAGCATTCTTTTTAGCTCCAATTGCTTCANAAATGCCTGAAATNTTANAATCA ATTTCATTATCAANAAAAGGTCATTCTCAAAGTATTAATATAGCTTTTTCAAATTTAATT GGTGGTACAATAACCAAAACAACTTTATTAATGGGTATTTTCTGTTTCTTTGGAGTTGTT AAAGGATTTGAATGGGAATCACCTACATATTCATTATGCTTGATATTATTGACAATTTGT GCAGCTGCAGCATCTGGTATTGGTTATTTTGTGAACAAGATAAAACAACAACAAGGTTTA ATGTTATTCGCNATTTTCTTATTAGCCGGAATAATACAATATTAATAAAATATAA
sequence update	2001.11.24
Translated Amino Acid sequence	IKFNMTPVITAFLSFAFLCFASWCVGEGGEILGKKYDASIIGGLIIAWLNTAPEAIFFIT ALTSDNTRFAVGAVSGSSIVVCTVALGCCIVLGTRNRKGGSFQLQPPVKKQCLILLLSLL IPLFLSLVGYNVFFGIFGIIYYLIFIGYSLFHKLPEDEKKEDRDIEMGERKNGANEQTTA STTASSTESDDEDTDEEDEHDEPLYKGVFYLFLGGLLICYFSKPFIDSIVSLASSWEINP XLLAFFLAPIASXMPEXLXSISLSXKGHSQSINIAFSNLIGGTITKTTLLMGIFCFFGVV KGFEWESPTYSLCLILLTICAAAASGIGYFVNKIKQQQGLMLFAIFLLAGIIQY**ni
Translated Amino Acid sequence (All Frames)	Frame A: IKFNMTPVITAFLSFAFLCFASWCVGEGGEILGKKYDASIIGGLIIAWLNTAPEAIFFIT ALTSDNTRFAVGAVSGSSIVVCTVALGCCIVLGTRNRKGGSFQLQPPVKKQCLILLLSLL IPLFLSLVGYNVFFGIFGIIYYLIFIGYSLFHKLPEDEKKEDRDIEMGERKNGANEQTTA STTASSTESDDEDTDEEDEHDEPLYKGVFYLFLGGLLICYFSKPFIDSIVSLASSWEINP XLLAFFLAPIASXMPEXLXSISLSXKGHSQSINIAFSNLIGGTITKTTLLMGIFCFFGVV KGFEWESPTYSLCLILLTICAAAASGIGYFVNKIKQQQGLMLFAIFLLAGIIQY*ni Frame B: lnlihqlsqhfyrlhffvlhlgvlvkvvkslvrnmmpqllvvllgiqhqkqfslq hqviiqdlqleqlvvvvlfvqrwdvvfvqeiekvdhfnynhqlksnvfyyyhy* yhysyhwldimfslvfsesiiysldihyfinyqktrkkkivilkwvkermvqmnkrqh qqqhhqqnpttktpmkkmnmtnhyikvyfiyfvvffvtlvnhsltqlyhhhlgkliq xyhsflqllxkclkxxnqfhyqxkvilkvlilfqilvvqpkqlywvfsvslell kdlngnhlhihyayyqfvqlqhlvlviltrnnnkvcysxfsypeyninki* Frame C: iydtsyhsifivcislfcilvcwrwnpweiclnywwsnyslvkystrsnflyns ink*ykicswssw*ycslyssvgmlysfrykkkrwiisitttskamfnftiiiid tiiliigwicflwyfrnnllfnihwifiisitrrrekrrsyngkkewcktndsi nnsiinrirrrrhrrrtrtiircilfifrwsfnllltihlnciisiilgnsn xisilfssncfxnanxxinfiixkrsfskyysffkfnwwynnqnnfingyflflwsc ri*mgityifimldiidnlcscsiwywlfceqdktttrfnvirxflisrnntiliky
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFK405 (VFK405Q) /CSM/VF/VFK4-A/VFK405Q.Seq.d/ 2095 0.0 VFE592 (VFE592Q) /CSM/VF/VFE5-D/VFE592Q.Seq.d/ 2056 0.0 CFK315 (CFK315Q) /CSM/CF/CFK3-A/CFK315Q.Seq.d/ 2046 0.0 CFK314 (CFK314Q) /CSM/CF/CFK3-A/CFK314Q.Seq.d/ 1334 0.0 SFI661 (SFI661Q) /CSM/SF/SFI6-C/SFI661Q.Seq.d/ 1241 0.0 CFK310 (CFK310Q) /CSM/CF/CFK3-A/CFK310Q.Seq.d/ 1235 0.0 SFI548 (SFI548Q) /CSM/SF/SFI5-B/SFI548Q.Seq.d/ 950 0.0 SFF365 (SFF365Q) /CSM/SF/SFF3-C/SFF365Q.Seq.d/ 795 0.0 CFK409 (CFK409Q) /CSM/CF/CFK4-A/CFK409Q.Seq.d/ 424 e-117 VFF585 (VFF585Q) /CSM/VF/VFF5-D/VFF585Q.Seq.d/ 222 9e-57
own update	2001.12. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 5e-11 21 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 38 8e-10 19 AC116988\|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 48 1e-09 18 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 2e-09 20 AE014827\|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence. 34 7e-09 18 AE014837\|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence. 34 1e-07 20 AC115577\|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 38 1e-07 17 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 1e-07 22 AE014828\|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence. 48 2e-07 16 AL844505\|AL844505.1 Plasmodium falciparum chromosome 6. 48 4e-07 22
dna update	2003.10.29
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP001399_2159(CP001399\|pid:none) Sulfolobus islandicus L.S.2.15,... 50 1e-04 CP001400_2012(CP001400\|pid:none) Sulfolobus islandicus M.14.25, ... 50 1e-04 AE006641_2942(AE006641\|pid:none) Sulfolobus solfataricus P2, com... 49 2e-04 CP001399_1018(CP001399\|pid:none) Sulfolobus islandicus L.S.2.15,... 41 0.063 CP001400_931(CP001400\|pid:none) Sulfolobus islandicus M.14.25, c... 41 0.063 CP001401_987(CP001401\|pid:none) Sulfolobus islandicus M.16.27, c... 41 0.063 CP001402_1018(CP001402\|pid:none) Sulfolobus islandicus M.16.4, c... 40 0.14 CP000300_394(CP000300\|pid:none) Methanococcoides burtonii DSM 62... 39 0.31 AE017285_2604(AE017285\|pid:none) Desulfovibrio vulgaris subsp. v... 39 0.31 CP000742_384(CP000742\|pid:none) Methanococcus vannielii SB, comp... 38 0.53
protein update	2009. 7.11
PSORT	psg: 0.97 gvh: 0.75 alm: 0.15 top: 0.33 tms: 0.53 mit: 0.28 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 1.00 m3b: 0.00 m_ : 0.00 40.0 %: endoplasmic reticulum 36.0 %: plasma membrane 12.0 %: mitochondrial 4.0 %: Golgi 4.0 %: vacuolar 4.0 %: extracellular, including cell wall >> prediction for VFK405 is end
5' end seq. ID	VFK405F
5' end seq.	>VFK405F.Seq ATTAAATTTAATATGACACCAGTTATCACAGCATTTTTATCGTTTGCATTTCTTTGTTTT GCATCTTGGTGTGTTGGTGAAGGTGGTGAAATCCTTGGTAAGAAATATGATGCCTCAATT ATTGGTGGTCTAATTATAGCTTGGTTAAATACAGCACCAGAAGCAATTTTCTTTATAACA GCATTAACAAGTGATAATACAAGATTTGCAGTTGGAGCAGTTAGTGGTAGTAGTATTGTA GTTTGTACAGTAGCGTTGGGATGTTGTATAGTTTTAGGTACAAGAAATAGAAAAGGTGGA TCATTTCAATTACAACCACCAGTTAAAAAGCAATGTTTAATTTTACTATTATCATTATTG ATACCATTATTCTTATCATTGGTTGGATATAATGTTTTCTTTGGTATTTTCGGAATAATC TATTATTTAATATTCATTGGATATTCATTATTTCATAAATTACCAGAAGACGAGAAAAAA GAAGATCGTGATATTGAAATGGGTGAAAGAAAGAATGGTGCAAATGAACAAACGACAGCA TCAACAACAGCATCATCAACAGAATCCGACGACGAAGACACCGATGAAGAAGATGAACAT GACGAACCATTATATAAAGGTGTATTTTATTTATTTTTAGGTGGTCTTTTAATTTGTNNN NNNNNNN
Length of 5' end seq.	667
3' end seq. ID	VFK405Z
3' end seq.	>VFK405Z.Seq NNNNNNNNNNGAACATGACGAACCATTATATAAAGGTGTATTTTATTTATTTTTAGGTGG TCTTTTAATTTGTTACTTTAGTAAACCATTCATTGACTCAATTGTATCATTAGCATCATC TTGGGAAATTAATCCAATNTTATTAGCATTCTTTTTAGCTCCAATTGCTTCANAAATGCC TGAAATNTTANAATCAATTTCATTATCAANAAAAGGTCATTCTCAAAGTATTAATATAGC TTTTTCAAATTTAATTGGTGGTACAATAACCAAAACAACTTTATTAATGGGTATTTTCTG TTTCTTTGGAGTTGTTAAAGGATTTGAATGGGAATCACCTACATATTCATTATGCTTGAT ATTATTGACAATTTGTGCAGCTGCAGCATCTGGTATTGGTTATTTTGTGAACAAGATAAA ACAACAACAAGGTTTAATGTTATTCGCNATTTTCTTATTAGCCGGAATAATACAATATTA ATAAAATATAA
Length of 3' end seq.	491
Connected seq. ID	VFK405P
Connected seq.	>VFK405P.Seq ATTAAATTTAATATGACACCAGTTATCACAGCATTTTTATCGTTTGCATTTCTTTGTTTT GCATCTTGGTGTGTTGGTGAAGGTGGTGAAATCCTTGGTAAGAAATATGATGCCTCAATT ATTGGTGGTCTAATTATAGCTTGGTTAAATACAGCACCAGAAGCAATTTTCTTTATAACA GCATTAACAAGTGATAATACAAGATTTGCAGTTGGAGCAGTTAGTGGTAGTAGTATTGTA GTTTGTACAGTAGCGTTGGGATGTTGTATAGTTTTAGGTACAAGAAATAGAAAAGGTGGA TCATTTCAATTACAACCACCAGTTAAAAAGCAATGTTTAATTTTACTATTATCATTATTG ATACCATTATTCTTATCATTGGTTGGATATAATGTTTTCTTTGGTATTTTCGGAATAATC TATTATTTAATATTCATTGGATATTCATTATTTCATAAATTACCAGAAGACGAGAAAAAA GAAGATCGTGATATTGAAATGGGTGAAAGAAAGAATGGTGCAAATGAACAAACGACAGCA TCAACAACAGCATCATCAACAGAATCCGACGACGAAGACACCGATGAAGAAGATGAACAT GACGAACCATTATATAAAGGTGTATTTTATTTATTTTTAGGTGGTCTTTTAATTTGT--- -------GAACATGACGAACCATTATATAAAGGTGTATTTTATTTATTTTTAGGTGGTCT TTTAATTTGTTACTTTAGTAAACCATTCATTGACTCAATTGTATCATTAGCATCATCTTG GGAAATTAATCCAATNTTATTAGCATTCTTTTTAGCTCCAATTGCTTCANAAATGCCTGA AATNTTANAATCAATTTCATTATCAANAAAAGGTCATTCTCAAAGTATTAATATAGCTTT TTCAAATTTAATTGGTGGTACAATAACCAAAACAACTTTATTAATGGGTATTTTCTGTTT CTTTGGAGTTGTTAAAGGATTTGAATGGGAATCACCTACATATTCATTATGCTTGATATT ATTGACAATTTGTGCAGCTGCAGCATCTGGTATTGGTTATTTTGTGAACAAGATAAAACA ACAACAAGGTTTAATGTTATTCGCNATTTTCTTATTAGCCGGAATAATACAATATTAATA AAATATAA
Length of connected seq.	1138
Full length Seq ID	VFK405E
Full length Seq.	>VFK405E.Seq ATTAAATTTAATATGACACCAGTTATCACAGCATTTTTATCGTTTGCATTTCTTTGTTTT GCATCTTGGTGTGTTGGTGAAGGTGGTGAAATCCTTGGTAAGAAATATGATGCCTCAATT ATTGGTGGTCTAATTATAGCTTGGTTAAATACAGCACCAGAAGCAATTTTCTTTATAACA GCATTAACAAGTGATAATACAAGATTTGCAGTTGGAGCAGTTAGTGGTAGTAGTATTGTA GTTTGTACAGTAGCGTTGGGATGTTGTATAGTTTTAGGTACAAGAAATAGAAAAGGTGGA TCATTTCAATTACAACCACCAGTTAAAAAGCAATGTTTAATTTTACTATTATCATTATTG ATACCATTATTCTTATCATTGGTTGGATATAATGTTTTCTTTGGTATTTTCGGAATAATC TATTATTTAATATTCATTGGATATTCATTATTTCATAAATTACCAGAAGACGAGAAAAAA GAAGATCGTGATATTGAAATGGGTGAAAGAAAGAATGGTGCAAATGAACAAACGACAGCA TCAACAACAGCATCATCAACAGAATCCGACGACGAAGACACCGATGAAGAAGATGAACAT GACGAACCATTATATAAAGGTGTATTTTATTTATTTTTAGGTGGTCTTTTAATTTGTTAC TTTAGTAAACCATTCATTGACTCAATTGTATCATTAGCATCATCTTGGGAAATTAATCCA ATNTTATTAGCATTCTTTTTAGCTCCAATTGCTTCANAAATGCCTGAAATNTTANAATCA ATTTCATTATCAANAAAAGGTCATTCTCAAAGTATTAATATAGCTTTTTCAAATTTAATT GGTGGTACAATAACCAAAACAACTTTATTAATGGGTATTTTCTGTTTCTTTGGAGTTGTT AAAGGATTTGAATGGGAATCACCTACATATTCATTATGCTTGATATTATTGACAATTTGT GCAGCTGCAGCATCTGGTATTGGTTATTTTGTGAACAAGATAAAACAACAACAAGGTTTA ATGTTATTCGCNATTTTCTTATTAGCCGGAATAATACAATATTAATAAAATATAA
Length of full length seq.	1075

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas