AFM818
Library AF
(Link to library)
Clone ID AFM818
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM818 (AFM818Q) /CSM/AF/AFM8-A/AFM818Q.Seq.d/
GGAAGTTAGAGCAGCAGTAGTAGTAGTAGCAGTAGTAGTAGTTAGGTTGTTGTANAAGTN
CGTGATNGGGAGACAAACNCCTTTGNGNGTNTATATAGTTNANAAAANGNGNCGAACCCT
GAAAAAGAAAAGAANGAAAANGTANGXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence
EVRAAVVVVAVVVVRLLXKXVXGRQTPLXVYIVXKXXRTLKKKRXKXX---


Translated Amino Acid sequence (All Frames)
Frame A:
gs*sssssssssss*vvvxvrdxetnxfxxxysxxxxxnpekekxexv---


Frame B:
EVRAAVVVVAVVVVRLLXKXVXGRQTPLXVYIVXKXXRTLKKKRXKXX---


Frame C:
kleqq****q***lgccxsx*xgdkxlxxxi*xxkxxep*krkexkx---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM818 (AFM818Q) /CSM/AF/AFM8-A/AFM818Q.Seq.d/ 119 1e-26
SSL396 (SSL396Q) /CSM/SS/SSL3-D/SSL396Q.Seq.d/ 111 3e-24
SSD511 (SSD511Q) /CSM/SS/SSD5-A/SSD511Q.Seq.d/ 111 3e-24
SLH586 (SLH586Q) /CSM/SL/SLH5-D/SLH586Q.Seq.d/ 111 3e-24
SLD663 (SLD663Q) /CSM/SL/SLD6-C/SLD663Q.Seq.d/ 111 3e-24
SLC389 (SLC389Q) /CSM/SL/SLC3-D/SLC389Q.Seq.d/ 111 3e-24
AFN870 (AFN870Q) /CSM/AF/AFN8-C/AFN870Q.Seq.d/ 111 3e-24
SFK348 (SFK348Q) /CSM/SF/SFK3-B/SFK348Q.Seq.d/ 56 2e-07
SLH303 (SLH303Q) /CSM/SL/SLH3-A/SLH303Q.Seq.d/ 34 0.56
SLC554 (SLC554Q) /CSM/SL/SLC5-C/SLC554Q.Seq.d/ 34 0.56

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ329716) Dictyostelium discoideum cDNA clone:dda26d06, 5' ... 119 2e-26 2
(AU062104) Dictyostelium discoideum slug cDNA, clone SLH586. 111 5e-24 2
(AU060959) Dictyostelium discoideum slug cDNA, clone SLC389. 111 5e-24 2
(BJ328564) Dictyostelium discoideum cDNA clone:dda28l18, 5' ... 111 5e-24 2
(AU074628) Dictyostelium discoideum slug cDNA, clone SSL396. 111 5e-24 2
(AU072143) Dictyostelium discoideum slug cDNA, clone SSD511. 111 5e-24 2
(AU061278) Dictyostelium discoideum slug cDNA, clone SLD663. 111 5e-24 2
(BJ390191) Dictyostelium discoideum cDNA clone:dds21p11, 5' ... 56 4e-04 1
(ED461358) AUAC-aao51b10.g1 Ascaris suum whole genome shotgu... 42 5.6 1
(DU281534) 1098448234568 CHORI-243 Ovis aries genomic clone ... 42 5.6 1
dna update 2009. 4.14
Homology vs Protein

***** No hits found ******

Lambda K H
0.298 0.125 0.343

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 67,778,060
protein update 2009. 4. 6
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM818 is

5' end seq. ID AFM818F
5' end seq.
>AFM818F.Seq
GGAAGTTAGAGCAGCAGTAGTAGTAGTAGCAGTAGTAGTAGTTAGGTTGTTGTANAAGTN
CGTGATNGGGAGACAAACNCCTTTGNGNGTNTATATAGTTNANAAAANGNGNCGAACCCT
GAAAAAGAAAAGAANGAAAANGTANGXXXXXXXXXX
Length of 5' end seq. 156
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -