NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM817
Library AF
(Link to library)
Clone ID AFM817
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM817P
(Link to Original site)
Representative DNA sequence 
>AFM817 (AFM817Q) /CSM/AF/AFM8-A/AFM817Q.Seq.d/
AATTATTTAGACCACACACATTTTACACGCACGCACAATACGTTAGAATATATAATTATA
TTAATATACGATAAAAAAACATTATACAGCAAACGCAAATTATTGTATCTTTCAAATTAA
AAAAAAAAXXXXXXXXXXTACAACAGCAAAACCNNCCNAATAATAATAATAATAATAATG
ATGATGAGGATGAAGATGAAGATGGTGATATTCCAGATTTAGATGATTTCCAAGATGATA
ATATAATTGAAGAAGAGGATCCAGCTGTATTATCAAAAAATAATAAAACAACAACTACTA
CAACAGCTAACAACAATAATAATAATAATTCAGAAAATAAAGTTGAAGATAATGATAATA
TTTTACGTACTCGTACATATGATATTTCAATCACTTATGATAAATATTATCAAACACCAA
GAGTTTGGTTATTTGGATATGATGAAAATAGAAAACCATTGAAACCAGAAGAAATCTTTG
AAGATATTTCAGAAGATCATGCACATAAAACTGTCACAATCGATAGCCACCCACATTTAG
GTATCTCATTTGCATACATTCATCCATGTAGACATGCTGCCGTCATGAAAAAATTGGTTG
ATAGACAATCCGAAAATGGTAAAGAACCAAGAGTTGACCAATATTTATT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
ii*tthilhartir*ni*ly*YTIKKHYTANANYCIFQIKKK---

---QQQNXPNNNNNNNDDEDEDEDGDIPDLDDFQDDNIIEEEDPAVLSKNNKTTTTTTAN
NNNNNNSENKVEDNDNILRTRTYDISITYDKYYQTPRVWLFGYDENRKPLKPEEIFEDIS
EDHAHKTVTIDSHPHLGISFAYIHPCRHAAVMKKLVDRQSENGKEPRVDQYL
Translated Amino Acid sequence (All Frames) 
Frame A:
nyldhthftrthntleyiiiliydkktlyskrkllylsn*kk---

---ynsktxxiiiiiimmmrmkmkmvifqi*miskmii*lkkriqlyyqkiikqqllqql
ttiiiiiqkiklkimiifyvlvhmifqslminiikhqefgyldmmkienh*nqkkslkif
qkimhiklsqsiathi*vshlhtfihvdmlps*knwlidnpkmvknqeltniy

Frame B:
ii*tthilhartir*ni*ly*YTIKKHYTANANYCIFQIKKK---

---ttakpxx*********g*r*rw*ysrfr*fpr**yn*rrgssciikk**nnnyyns*
qq****frk*s*r***yftysyi*yfnhl**ilsntkslviwi**k*ktietrrnl*ryf
rrsct*nchnr*pptfrylicihssm*tccrhekig**tirkw*rtks*pifi

Frame C:
lfrphtfythaqyvriynyinir*kniiqqtqiivsfklkkk---

---QQQNXPNNNNNNNDDEDEDEDGDIPDLDDFQDDNIIEEEDPAVLSKNNKTTTTTTAN
NNNNNNSENKVEDNDNILRTRTYDISITYDKYYQTPRVWLFGYDENRKPLKPEEIFEDIS
EDHAHKTVTIDSHPHLGISFAYIHPCRHAAVMKKLVDRQSENGKEPRVDQYL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB748 (SLB748Q) /CSM/SL/SLB7-B/SLB748Q.Seq.d/                        634   0.0
AFM817 (AFM817Q) /CSM/AF/AFM8-A/AFM817Q.Seq.d/                        634   0.0
VFI445 (VFI445Q) /CSM/VF/VFI4-B/VFI445Q.Seq.d/                        622   e-177
CFB657 (CFB657Q) /CSM/CF/CFB6-C/CFB657Q.Seq.d/                        622   e-177
CFH171 (CFH171Q) /CSM/CF/CFH1-C/CFH171Q.Seq.d/                        617   e-176
AFL613 (AFL613Q) /CSM/AF/AFL6-A/AFL613Q.Seq.d/                        611   e-174
CFI566 (CFI566Q) /CSM/CF/CFI5-C/CFI566Q.Seq.d/                        605   e-172
SFH850 (SFH850Q) /CSM/SF/SFH8-C/SFH850Q.Seq.d/                        601   e-171
AFE201 (AFE201Q) /CSM/AF/AFE2-A/AFE201Q.Seq.d/                        599   e-170
AFM210 (AFM210Q) /CSM/AF/AFM2-A/AFM210Q.Seq.d/                        593   e-168
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...   611   0.0    4
(BJ347066) Dictyostelium discoideum cDNA clone:dda26b06, 3' ...   611   0.0    3
(AU034106) Dictyostelium discoideum slug cDNA, clone SLB748.      611   0.0    2
(BJ432028) Dictyostelium discoideum cDNA clone:ddv17j12, 3' ...   599   e-179  3
(BJ373681) Dictyostelium discoideum cDNA clone:ddc4a16, 3' e...   599   e-179  2
(BJ373086) Dictyostelium discoideum cDNA clone:ddc15m17, 3' ...   593   e-177  2
(BJ346492) Dictyostelium discoideum cDNA clone:dda24i04, 3' ...   587   e-176  3
(BJ375383) Dictyostelium discoideum cDNA clone:ddc18c17, 3' ...   581   e-174  3
(BJ402364) Dictyostelium discoideum cDNA clone:dds16d14, 3' ...   577   e-173  2
(BJ341974) Dictyostelium discoideum cDNA clone:dda9a02, 3' e...   575   e-172  2
dna update 2009. 4.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ747649_1(FJ747649|pid:none) Triticum aestivum ATG3 protein (AT...   144   2e-33
EU972874_1(EU972874|pid:none) Zea mays clone 389483 autophagy-re...   144   2e-33
BT052164_1(BT052164|pid:none) Medicago truncatula clone MTYF9_FA...   144   2e-33
AY350711_16(AY350711|pid:none) Sisymbrium irio clone BAC Sio11E1...   144   3e-33
(Q0WWQ1) RecName: Full=Autophagy-related protein 3; AltName: Ful...   143   4e-33
AM910989_29(AM910989|pid:none) Plasmodium knowlesi strain H chro...   133   4e-30
FJ416327_1(FJ416327|pid:none) Bombyx mori autophagy related prot...   132   1e-29
(Q6GQE7) RecName: Full=Autophagy-related protein 3; AltName: Ful...   130   3e-29
(Q0VCL3) RecName: Full=Autophagy-related protein 3;  &BC120110_1...   130   4e-29
(Q9NT62) RecName: Full=Autophagy-related protein 3; AltName: Ful...   130   4e-29
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM817 is

5' end seq. ID AFM817F
5' end seq. 
>AFM817F.Seq
AATTATTTAGACCACACACATTTTACACGCACGCACAATACGTTAGAATATATAATTATA
TTAATATACGATAAAAAAACATTATACAGCAAACGCAAATTATTGTATCTTTCAAATTAA
AAAAAAAAXXXXXXXXXX
Length of 5' end seq. 138
3' end seq. ID AFM817Z
3' end seq. 
>AFM817Z.Seq
XXXXXXXXXXTACAACAGCAAAACCNNCCNAATAATAATAATAATAATAATGATGATGAG
GATGAAGATGAAGATGGTGATATTCCAGATTTAGATGATTTCCAAGATGATAATATAATT
GAAGAAGAGGATCCAGCTGTATTATCAAAAAATAATAAAACAACAACTACTACAACAGCT
AACAACAATAATAATAATAATTCAGAAAATAAAGTTGAAGATAATGATAATATTTTACGT
ACTCGTACATATGATATTTCAATCACTTATGATAAATATTATCAAACACCAAGAGTTTGG
TTATTTGGATATGATGAAAATAGAAAACCATTGAAACCAGAAGAAATCTTTGAAGATATT
TCAGAAGATCATGCACATAAAACTGTCACAATCGATAGCCACCCACATTTAGGTATCTCA
TTTGCATACATTCATCCATGTAGACATGCTGCCGTCATGAAAAAATTGGTTGATAGACAA
TCCGAAAATGGTAAAGAACCAAGAGTTGACCAATATTTATT
Length of 3' end seq. 521
Connected seq. ID AFM817P
Connected seq. 
>AFM817P.Seq
AATTATTTAGACCACACACATTTTACACGCACGCACAATACGTTAGAATATATAATTATA
TTAATATACGATAAAAAAACATTATACAGCAAACGCAAATTATTGTATCTTTCAAATTAA
AAAAAAAA----------TACAACAGCAAAACCNNCCNAATAATAATAATAATAATAATG
ATGATGAGGATGAAGATGAAGATGGTGATATTCCAGATTTAGATGATTTCCAAGATGATA
ATATAATTGAAGAAGAGGATCCAGCTGTATTATCAAAAAATAATAAAACAACAACTACTA
CAACAGCTAACAACAATAATAATAATAATTCAGAAAATAAAGTTGAAGATAATGATAATA
TTTTACGTACTCGTACATATGATATTTCAATCACTTATGATAAATATTATCAAACACCAA
GAGTTTGGTTATTTGGATATGATGAAAATAGAAAACCATTGAAACCAGAAGAAATCTTTG
AAGATATTTCAGAAGATCATGCACATAAAACTGTCACAATCGATAGCCACCCACATTTAG
GTATCTCATTTGCATACATTCATCCATGTAGACATGCTGCCGTCATGAAAAAATTGGTTG
ATAGACAATCCGAAAATGGTAAAGAACCAAGAGTTGACCAATATTTATT
Length of connected seq. 639
Full length Seq ID -
Full length Seq. -
Length of full length seq. -