VFK267
Library VF
(Link to library)
Clone ID VFK267
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15331-1
Original site URL
Representative seq. ID VFK267P
(Link to Original site)
Representative DNA sequence
>VFK267 (VFK267Q) /CSM/VF/VFK2-C/VFK267Q.Seq.d/
AGTAATATTTCACACAATATATAAAATGTCATCTTATTTATTCACTAGTGAATCCGTCAC
CGAAGGTCATCCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTCGATGCTTGTTT
AGCTCAAGATCCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACTGGTATGGTTAT
GATTTTAGGTGAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTTGTTCGTGAAGC
TGTTAAAAAGATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAAACTTGCAATGT
TTTAGTTGCAATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCACATTGGTAAAGT
TAACCCAGAAGATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTATGCCACCAACGA
AACCCCAACTTTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTCAACAAATTAAC
TGAATTACGTCACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAGACTCAAGTCAC
TGTTGAATACAAAAAAGAAGGTCACAAAATCACTCCAGTCAGAGTACACACCATCGTTAT
TXXXXXXXXXXAATTAGTCATCAAAGCTGNTGTTCCAGCTCAATACTTANACGATAACNC
CATNTACCATTTGAATCCATCAGGTCGTTTNGTCATTGGTGGCCCAATGGGTGATTNTGG
TTTAACCGGTNGTAANATCATCATTGATTCATATGGTGGTTGGGGTGCTCACGGTGGTGG
TGCTTTNTCTGGTAAANATGCCACTAAANTCGATCGTTNTGGTGCTTACGCTGCTANATG
GATCGCTAAATCTTTAGTTGCCGCTGGTCTTGCCGATCGTTGTTTAGTTCAAGTTTCANA
CTCTATTGGTGTTGCCAANCCACTCAGTGTCTTTGTTNANACCTATGGGACCGGTAAAAA
NACTGATGCTGAAACCCTTGCCATCATCGATAANAACTTTGATTTACGNCCAGGTTGTTT
AANGNGTGACCNCCAATTAACTCGNCCNATTTTCCAAAAAACNGCCNCTGGTGGACNCTT
TGGTANAAAAGANCCAGACNTTACCTGGGAAACCGNCAAANAACNCAAGANGTAAGGATA
G
sequence update 2001.11.22
Translated Amino Acid sequence
VIFHTIYKMSSYLFTSESVTEGHPDKICDQVSDAVLDACLAQDPLSKVACETATKTGMVM
ILGEITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVHIGKV
NPEDIGAGDQGHMFGYATNETPTLMPLTHFLASELVNKLTELRHNGTLAWARPDAKTQVT
VEYKKEGHKITPVRVHTIVI---

---LVIKAXVPAQYLXDNXXYHLNPSGRXVIGGPMGDXGLTGXXIIIDSYGGWGAHGGGA
XSGKXATKXDRXGAYAAXWIAKSLVAAGLADRCLVQVSXSIGVAXPLSVFVXTYGTGKXT
DAETLAIIDXNFDLRPGCLXXDXQLTRPIFQKTAXGGXFGXKXPDXTWETXKXXKX*g*


Translated Amino Acid sequence (All Frames)
Frame A:
snishni*nvilfih**irhrrssr*nl*ssirccsrclfssrsiikscl*ncnqnwygy
dfr*nyhqsqr*lskscs*sc*kdwl**likrf*lqnlqcfscn*ttitrycsrcphw*s
*prrywcw*srshvwlchqrnpnfnatysfprl*isqqin*itsqwylslgssrcqdssh
c*iqkrrsqnhssqsthhry---

---n*ssklxfqlntxtitpxti*ihqvvxslvaqwvixv*pvvxsslihmvvgvltvvv
lxlvxmplxsivxvltllxgslnl*lplvlpivv*fkfxtllvlpxhsvslxxpmgpvkx
lmlkplpssixtliyxqvv*xvtxn*lxxfskkxplvdxlvxkxqtlpgkpxxnxrxkd

Frame B:
VIFHTIYKMSSYLFTSESVTEGHPDKICDQVSDAVLDACLAQDPLSKVACETATKTGMVM
ILGEITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVHIGKV
NPEDIGAGDQGHMFGYATNETPTLMPLTHFLASELVNKLTELRHNGTLAWARPDAKTQVT
VEYKKEGHKITPVRVHTIVI---

---ishqsxcsssilxr*xhxpfesirsfxhwwpng*xwfnrx*xhh*fiwwlgcsrwwc
fxw*xch*xrsxwclrcxmdr*ifscrwscrslfsssfxlywccqxtqclcxxlwdr*kx
*c*npchhr*xl*ftxrlfxx*ppinsxxfpknxxwwtlwxkrxrxylgnrqxtqxvri

Frame C:
*yftqyikchliyslvnpspkviqiksvikyqmlfsmlv*lkihyqkllvklqpklvwl*
f*vklppkptltikklfvkllkrlvmmthqkvlitklamf*lqlnnnhqillkvstlvkl
tqkilvlvikvtclvmpptkpql*chllisspln*stn*lnyvtmvp*pglvqmprlksl
lntkkkvtkslqseytpsl---

---LVIKAXVPAQYLXDNXXYHLNPSGRXVIGGPMGDXGLTGXXIIIDSYGGWGAHGGGA
XSGKXATKXDRXGAYAAXWIAKSLVAAGLADRCLVQVSXSIGVAXPLSVFVXTYGTGKXT
DAETLAIIDXNFDLRPGCLXXDXQLTRPIFQKTAXGGXFGXKXPDXTWETXKXXKX*g*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK267 (VFK267Q) /CSM/VF/VFK2-C/VFK267Q.Seq.d/ 1994 0.0
VFN312 (VFN312Q) /CSM/VF/VFN3-A/VFN312Q.Seq.d/ 1191 0.0
VFN128 (VFN128Q) /CSM/VF/VFN1-B/VFN128Q.Seq.d/ 1191 0.0
VFM886 (VFM886Q) /CSM/VF/VFM8-D/VFM886Q.Seq.d/ 1191 0.0
VFM766 (VFM766Q) /CSM/VF/VFM7-C/VFM766Q.Seq.d/ 1191 0.0
VFM596 (VFM596Q) /CSM/VF/VFM5-D/VFM596Q.Seq.d/ 1191 0.0
VFL503 (VFL503Q) /CSM/VF/VFL5-A/VFL503Q.Seq.d/ 1191 0.0
VFL319 (VFL319Q) /CSM/VF/VFL3-A/VFL319Q.Seq.d/ 1191 0.0
VFL166 (VFL166Q) /CSM/VF/VFL1-C/VFL166Q.Seq.d/ 1191 0.0
VFI164 (VFI164Q) /CSM/VF/VFI1-C/VFI164Q.Seq.d/ 1191 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ390497|AJ390497.1 Candida albicans partial mRNA for S-adenosylmethionine synthetase 2 (sam2 gene). 107 3e-57 4
AX595308|AX595308.1 Sequence 962 from Patent EP1258494. 109 2e-48 6
M23368|M23368.1 Saccharomyces cerevisiae S-adenosylmethionine synthetase (SAM2) gene, complete cds. 109 2e-47 6
U33057|U33057.1 Saccharomyces cerevisiae chromosome IV cosmids 8166, 9787, 9717, and lambda 3073. 109 6e-40 7
CA754635| (NM_068470) S-adenosylmethionine synthetase [Caenorhabditis, mRNA sequence. 66 1e-30 5
Z71271|Z71271.1 C.roseus mRNA for S-adenosyl-L-methionine synthetase 1. 72 4e-30 4
AL424144|AL424144.1 T7 end of clone AZ0AA012F03 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus. 78 2e-29 5
T37377|T37377.1 EST102487 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence. 70 5e-29 3
CA517680|CA517680.1 KS09087D05 KS09 Capsicum annuum cDNA, mRNA sequence. 60 9e-29 5
BG589726|BG589726.1 EST497568 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI2F2 5' sequence, mRNA sequence. 82 2e-27 3
dna update 2003.10.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54F07) RecName: Full=S-adenosylmethionine synthetase; ... 590 e-167
AY324626_1(AY324626|pid:none) Amoeba proteus S-adenosylmethionin... 429 e-119
AB461924_1(AB461924|pid:none) Cylindrotheca closterium MAT mRNA ... 421 e-116
AB461925_1(AB461925|pid:none) Ditylum brightwellii MAT mRNA for ... 408 e-112
AB461922_1(AB461922|pid:none) Asterionella glacialis MAT mRNA fo... 405 e-111
FJ404748_1(FJ404748|pid:none) Porphyra yezoensis putative S-aden... 405 e-111
(A9NUH8) RecName: Full=S-adenosylmethionine synthetase 1; ... 405 e-111
(P31153) RecName: Full=S-adenosylmethionine synthetase isoform t... 404 e-111
AK166671_1(AK166671|pid:none) Mus musculus morula whole body mor... 403 e-111
(P50301) RecName: Full=S-adenosylmethionine synthetase 1; ... 402 e-110
protein update 2009. 6.22
PSORT

psg: 0.88 gvh: 0.51 alm: 0.35 top: 0.37 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
20.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for VFK267 is mit

5' end seq. ID VFK267F
5' end seq.
>VFK267F.Seq
AGTAATATTTCACACAATATATAAAATGTCATCTTATTTATTCACTAGTGAATCCGTCAC
CGAAGGTCATCCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTCGATGCTTGTTT
AGCTCAAGATCCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACTGGTATGGTTAT
GATTTTAGGTGAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTTGTTCGTGAAGC
TGTTAAAAAGATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAAACTTGCAATGT
TTTAGTTGCAATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCACATTGGTAAAGT
TAACCCAGAAGATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTATGCCACCAACGA
AACCCCAACTTTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTCAACAAATTAAC
TGAATTACGTCACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAGACTCAAGTCAC
TGTTGAATACAAAAAAGAAGGTCACAAAATCACTCCAGTCAGAGTACACACCATCGTTAT
TNNNNNNNNNN
Length of 5' end seq. 611
3' end seq. ID VFK267Z
3' end seq.
>VFK267Z.Seq
NNNNNNNNNNAATTAGTCATCAAAGCTGNTGTTCCAGCTCAATACTTANACGATAACNCC
ATNTACCATTTGAATCCATCAGGTCGTTTNGTCATTGGTGGCCCAATGGGTGATTNTGGT
TTAACCGGTNGTAANATCATCATTGATTCATATGGTGGTTGGGGTGCTCACGGTGGTGGT
GCTTTNTCTGGTAAANATGCCACTAAANTCGATCGTTNTGGTGCTTACGCTGCTANATGG
ATCGCTAAATCTTTAGTTGCCGCTGGTCTTGCCGATCGTTGTTTAGTTCAAGTTTCANAC
TCTATTGGTGTTGCCAANCCACTCAGTGTCTTTGTTNANACCTATGGGACCGGTAAAAAN
ACTGATGCTGAAACCCTTGCCATCATCGATAANAACTTTGATTTACGNCCAGGTTGTTTA
ANGNGTGACCNCCAATTAACTCGNCCNATTTTCCAAAAAACNGCCNCTGGTGGACNCTTT
GGTANAAAAGANCCAGACNTTACCTGGGAAACCGNCAAANAACNCAAGANGTAAGGATAG
Length of 3' end seq. 540
Connected seq. ID VFK267P
Connected seq.
>VFK267P.Seq
AGTAATATTTCACACAATATATAAAATGTCATCTTATTTATTCACTAGTGAATCCGTCAC
CGAAGGTCATCCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTCGATGCTTGTTT
AGCTCAAGATCCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACTGGTATGGTTAT
GATTTTAGGTGAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTTGTTCGTGAAGC
TGTTAAAAAGATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAAACTTGCAATGT
TTTAGTTGCAATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCACATTGGTAAAGT
TAACCCAGAAGATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTATGCCACCAACGA
AACCCCAACTTTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTCAACAAATTAAC
TGAATTACGTCACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAGACTCAAGTCAC
TGTTGAATACAAAAAAGAAGGTCACAAAATCACTCCAGTCAGAGTACACACCATCGTTAT
T----------AATTAGTCATCAAAGCTGNTGTTCCAGCTCAATACTTANACGATAACNC
CATNTACCATTTGAATCCATCAGGTCGTTTNGTCATTGGTGGCCCAATGGGTGATTNTGG
TTTAACCGGTNGTAANATCATCATTGATTCATATGGTGGTTGGGGTGCTCACGGTGGTGG
TGCTTTNTCTGGTAAANATGCCACTAAANTCGATCGTTNTGGTGCTTACGCTGCTANATG
GATCGCTAAATCTTTAGTTGCCGCTGGTCTTGCCGATCGTTGTTTAGTTCAAGTTTCANA
CTCTATTGGTGTTGCCAANCCACTCAGTGTCTTTGTTNANACCTATGGGACCGGTAAAAA
NACTGATGCTGAAACCCTTGCCATCATCGATAANAACTTTGATTTACGNCCAGGTTGTTT
AANGNGTGACCNCCAATTAACTCGNCCNATTTTCCAAAAAACNGCCNCTGGTGGACNCTT
TGGTANAAAAGANCCAGACNTTACCTGGGAAACCGNCAAANAACNCAAGANGTAAGGATA
G
Length of connected seq. 1131
Full length Seq ID -
Full length Seq. -
Length of full length seq. -