VFK255
Library VF
(Link to library)
Clone ID VFK255
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16081-1
Original site URL
Representative seq. ID VFK255P
(Link to Original site)
Representative DNA sequence
>VFK255 (VFK255Q) /CSM/VF/VFK2-C/VFK255Q.Seq.d/
AAACCTCTCTAAAACAAACAAATAATGCTAAAAATGTCAGCACCAGAAGGACCATCAAAA
TGCACTTGGACTCCAAATACCACTGAAAACACTCCACATACCACCAGAAGAACTCCAAAG
AAATTAATTATGGATAATATTCTTGATAATATTGGTGGAACACCATTAGTTAGAGTTAAT
AAAGTTTCATCAGATTTAGAATGTGAATTAGTTGCAAAATGTGAATTTTTCAATGCAGGT
GGTTCAGTTAAGGATCGTATTGGTCATCGTATGATTGTTGATGCAGAAGAGAGTGGTAGA
ATTAAGAAAGGAGATACATTAATTGAACCAACCTCTGGTAACACTGGTATTGGTTTAGCA
TTGACAGCAGCCATCAAAGGTTACAAAATGATCATTACACTCCCAGAGAAAATGTCACAA
GAGAAAGTTGATGTCTTGAAAGCATTGGGAGCAGAGATCATTCGTACACCAACTGAAGCA
GCATTTGGTGCACCANAGTCACATATTGGNGTTGCAAAGAAATTAAATTCANAGATTNCA
AATTNCCACATTNTANATXXXXXXXXXXGCGGTGGTAGTTCAGGTTCCGCTATGGTTGGT
GCACTCCTAGCCGCCAAACAATTGAAAAAAGGTCAACGTTGTGTTGTCTTATTAGCCGAT
TCCATTAGAAACTATATGACCAAACATTTAAATGATGATTGGTTAGTCGACAATGGTTTC
GTTGATCCAGAATACAAAACTAAAGATCAACAAGAAGAAGAGAAATATCATGGTGCCACC
GTCAAAGATTTAACACTCCCAAAACCAATCACCATCTCTGCCACCACCACTTGTGCTGCC
GCAGTTCAACTCCTCCAACAATATGGTTTCGATCAATTACCAGTCGTTAGTGAATCAAAA
AAAGTTTTAGGTCAACTCACTCTTGGTAACTTACTCTCACATATTGCCTCTAAAAAAGCT
GTCCCAACTGATGCTGTCAGTAAAGTTATGTTCCGTTTCACTAAAAATGAAAAATATATT
CCAATCACTCAATCAACTTCTTTAGCTACTCTTAGCAAATTTTTCGAAAATCATAGCAGT
GCTATCGTAACTNAAAATGATNAAATCATTTCAATGTAACTAAAAT
sequence update 2001.11.22
Translated Amino Acid sequence
kpl*NKQIMLKMSAPEGPSKCTWTPNTTENTPHTTRRTPKKLIMDNILDNIGGTPLVRVN
KVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDTLIEPTSGNTGIGLA
LTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFGAPXSHIGVAKKLNSXIX
NXHIXX---

---GGSSGSAMVGALLAAKQLKKGQRCVVLLADSIRNYMTKHLNDDWLVDNGFVDPEYKT
KDQQEEEKYHGATVKDLTLPKPITISATTTCAAAVQLLQQYGFDQLPVVSESKKVLGQLT
LGNLLSHIASKKAVPTDAVSKVMFRFTKNEKYIPITQSTSLATLSKFFENHSSAIVTXND
XIISM*lk


Translated Amino Acid sequence (All Frames)
Frame A:
kpl*NKQIMLKMSAPEGPSKCTWTPNTTENTPHTTRRTPKKLIMDNILDNIGGTPLVRVN
KVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDTLIEPTSGNTGIGLA
LTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFGAPXSHIGVAKKLNSXIX
NXHIXX---

---avvvqvplwlvhs*ppnn*kkvnvvlsy*pipleti*pni*mmig*stmvsliqntk
lkinkkkrnimvppski*hsqnqspslppplvlpqfnssnnmvsinyqslvnqkkf*vns
llvtyshilplkklsqlmlsvklcsvslkmknifqslnqll*lllanfskiiavls*lkm
xksfqcn*n

Frame B:
nlsktnk*c*kcqhqkdhqnalglqiplktlhippeelqrn*lwiifliilvehh*leli
kfhqi*nvn*lqnvnfsmqvvqlrivlviv*llmqkrvvelrkeih*lnqplvtlvlv*h
*qqpskvtk*slhsqrkchkrklms*khweqrsfvhqlkqhlvhxshilxlqrn*ixrxq
ixtxx---

---rw*frfrygwctpsrqtiekrstlcclisrfh*klydqtfk**lvsrqwfr*sriqn
*rstrrreiswchrqrfntpktnhhlchhhlccrsstpptiwfrsitsr**ikksfrsth
sw*ltltycl*kscpn*ccq*syvpfh*k*kiysnhsinffsys*qifrks*qcyrnxk*
xnhfnvtk

Frame C:
tslkqtnnaknvstrrtikmhldskyh*khstyhqknskeinyg*ys**ywwntis*s**
sfirfrm*isckm*ifqcrwfs*gsywssydc*crrew*n*erryin*tnlw*hwywfsi
dsshqrlqndhytprenvtres*clesigsrdhsytn*ssiwctxvtywxckeikfxdxk
xphxx---

---GGSSGSAMVGALLAAKQLKKGQRCVVLLADSIRNYMTKHLNDDWLVDNGFVDPEYKT
KDQQEEEKYHGATVKDLTLPKPITISATTTCAAAVQLLQQYGFDQLPVVSESKKVLGQLT
LGNLLSHIASKKAVPTDAVSKVMFRFTKNEKYIPITQSTSLATLSKFFENHSSAIVTXND
XIISM*lk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK255 (VFK255Q) /CSM/VF/VFK2-C/VFK255Q.Seq.d/ 2077 0.0
VFN236 (VFN236Q) /CSM/VF/VFN2-B/VFN236Q.Seq.d/ 1041 0.0
VFK535 (VFK535Q) /CSM/VF/VFK5-B/VFK535Q.Seq.d/ 1041 0.0
SFI528 (SFI528Q) /CSM/SF/SFI5-B/SFI528Q.Seq.d/ 1041 0.0
SFH362 (SFH362Q) /CSM/SF/SFH3-C/SFH362Q.Seq.d/ 1041 0.0
SFH131 (SFH131Q) /CSM/SF/SFH1-B/SFH131Q.Seq.d/ 1041 0.0
SFD668 (SFD668Q) /CSM/SF/SFD6-C/SFD668Q.Seq.d/ 1041 0.0
VFO728 (VFO728Q) /CSM/VF/VFO7-B/VFO728Q.Seq.d/ 1039 0.0
VFH584 (VFH584Q) /CSM/VF/VFH5-D/VFH584Q.Seq.d/ 1039 0.0
CFF550 (CFF550Q) /CSM/CF/CFF5-C/CFF550Q.Seq.d/ 1039 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(U27536) Dictyostelium discoideum cystathionine beta synthas... 983 0.0 4
(BJ415168) Dictyostelium discoideum cDNA clone:ddv21m14, 5' ... 1065 0.0 1
(BJ433382) Dictyostelium discoideum cDNA clone:ddv21m14, 3' ... 648 0.0 2
(BJ400041) Dictyostelium discoideum cDNA clone:dds8g18, 3' e... 648 0.0 2
(BJ434425) Dictyostelium discoideum cDNA clone:ddv16g21, 3' ... 648 0.0 2
(BJ436195) Dictyostelium discoideum cDNA clone:ddv30h07, 3' ... 648 0.0 2
(BJ372406) Dictyostelium discoideum cDNA clone:ddc12c13, 3' ... 648 0.0 2
(BJ416796) Dictyostelium discoideum cDNA clone:ddv27g10, 5' ... 1003 0.0 2
(BJ388236) Dictyostelium discoideum cDNA clone:dds8g18, 5' e... 1003 0.0 2
(BJ391214) Dictyostelium discoideum cDNA clone:dds15l15, 5' ... 1003 0.0 2
dna update 2009. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U27536_1(U27536|pid:none) Dictyostelium discoideum cystathionine... 286 1e-75
AF424661_1(AF424661|pid:none) Phytophthora infestans clone MY-10... 199 2e-49
AK077669_1(AK077669|pid:none) Mus musculus 8 days embryo whole b... 198 3e-49
(Q58H57) RecName: Full=Cystathionine beta-synthase; EC=... 197 4e-49
D01098_1(D01098|pid:none) Rattus norvegicus mRNA for hemoprotein... 197 6e-49
CP000675_3151(CP000675|pid:none) Legionella pneumophila str. Cor... 197 6e-49
M88346_1(M88346|pid:none) Rat cystathionine beta-synthase mRNA, ... 197 6e-49
AE017354_2889(AE017354|pid:none) Legionella pneumophila subsp. p... 197 6e-49
(P32232) RecName: Full=Cystathionine beta-synthase; EC=... 197 6e-49
CR628337_2894(CR628337|pid:none) Legionella pneumophila str. Len... 197 6e-49
protein update 2009. 6.22
PSORT

psg: 0.74 gvh: 0.39 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal

>> prediction for VFK255 is nuc

5' end seq. ID VFK255F
5' end seq.
>VFK255F.Seq
AAACCTCTCTAAAACAAACAAATAATGCTAAAAATGTCAGCACCAGAAGGACCATCAAAA
TGCACTTGGACTCCAAATACCACTGAAAACACTCCACATACCACCAGAAGAACTCCAAAG
AAATTAATTATGGATAATATTCTTGATAATATTGGTGGAACACCATTAGTTAGAGTTAAT
AAAGTTTCATCAGATTTAGAATGTGAATTAGTTGCAAAATGTGAATTTTTCAATGCAGGT
GGTTCAGTTAAGGATCGTATTGGTCATCGTATGATTGTTGATGCAGAAGAGAGTGGTAGA
ATTAAGAAAGGAGATACATTAATTGAACCAACCTCTGGTAACACTGGTATTGGTTTAGCA
TTGACAGCAGCCATCAAAGGTTACAAAATGATCATTACACTCCCAGAGAAAATGTCACAA
GAGAAAGTTGATGTCTTGAAAGCATTGGGAGCAGAGATCATTCGTACACCAACTGAAGCA
GCATTTGGTGCACCANAGTCACATATTGGNGTTGCAAAGAAATTAAATTCANAGATTNCA
AATTNCCACATTNTANATNNNNNNNNNN
Length of 5' end seq. 568
3' end seq. ID VFK255Z
3' end seq.
>VFK255Z.Seq
NNNNNNNNNNGCGGTGGTAGTTCAGGTTCCGCTATGGTTGGTGCACTCCTAGCCGCCAAA
CAATTGAAAAAAGGTCAACGTTGTGTTGTCTTATTAGCCGATTCCATTAGAAACTATATG
ACCAAACATTTAAATGATGATTGGTTAGTCGACAATGGTTTCGTTGATCCAGAATACAAA
ACTAAAGATCAACAAGAAGAAGAGAAATATCATGGTGCCACCGTCAAAGATTTAACACTC
CCAAAACCAATCACCATCTCTGCCACCACCACTTGTGCTGCCGCAGTTCAACTCCTCCAA
CAATATGGTTTCGATCAATTACCAGTCGTTAGTGAATCAAAAAAAGTTTTAGGTCAACTC
ACTCTTGGTAACTTACTCTCACATATTGCCTCTAAAAAAGCTGTCCCAACTGATGCTGTC
AGTAAAGTTATGTTCCGTTTCACTAAAAATGAAAAATATATTCCAATCACTCAATCAACT
TCTTTAGCTACTCTTAGCAAATTTTTCGAAAATCATAGCAGTGCTATCGTAACTNAAAAT
GATNAAATCATTTCAATGTAACTAAAAT
Length of 3' end seq. 568
Connected seq. ID VFK255P
Connected seq.
>VFK255P.Seq
AAACCTCTCTAAAACAAACAAATAATGCTAAAAATGTCAGCACCAGAAGGACCATCAAAA
TGCACTTGGACTCCAAATACCACTGAAAACACTCCACATACCACCAGAAGAACTCCAAAG
AAATTAATTATGGATAATATTCTTGATAATATTGGTGGAACACCATTAGTTAGAGTTAAT
AAAGTTTCATCAGATTTAGAATGTGAATTAGTTGCAAAATGTGAATTTTTCAATGCAGGT
GGTTCAGTTAAGGATCGTATTGGTCATCGTATGATTGTTGATGCAGAAGAGAGTGGTAGA
ATTAAGAAAGGAGATACATTAATTGAACCAACCTCTGGTAACACTGGTATTGGTTTAGCA
TTGACAGCAGCCATCAAAGGTTACAAAATGATCATTACACTCCCAGAGAAAATGTCACAA
GAGAAAGTTGATGTCTTGAAAGCATTGGGAGCAGAGATCATTCGTACACCAACTGAAGCA
GCATTTGGTGCACCANAGTCACATATTGGNGTTGCAAAGAAATTAAATTCANAGATTNCA
AATTNCCACATTNTANAT----------GCGGTGGTAGTTCAGGTTCCGCTATGGTTGGT
GCACTCCTAGCCGCCAAACAATTGAAAAAAGGTCAACGTTGTGTTGTCTTATTAGCCGAT
TCCATTAGAAACTATATGACCAAACATTTAAATGATGATTGGTTAGTCGACAATGGTTTC
GTTGATCCAGAATACAAAACTAAAGATCAACAAGAAGAAGAGAAATATCATGGTGCCACC
GTCAAAGATTTAACACTCCCAAAACCAATCACCATCTCTGCCACCACCACTTGTGCTGCC
GCAGTTCAACTCCTCCAACAATATGGTTTCGATCAATTACCAGTCGTTAGTGAATCAAAA
AAAGTTTTAGGTCAACTCACTCTTGGTAACTTACTCTCACATATTGCCTCTAAAAAAGCT
GTCCCAACTGATGCTGTCAGTAAAGTTATGTTCCGTTTCACTAAAAATGAAAAATATATT
CCAATCACTCAATCAACTTCTTTAGCTACTCTTAGCAAATTTTTCGAAAATCATAGCAGT
GCTATCGTAACTNAAAATGATNAAATCATTTCAATGTAACTAAAAT
Length of connected seq. 1116
Full length Seq ID -
Full length Seq. -
Length of full length seq. -