VFK183
Library VF
(Link to library)
Clone ID VFK183
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID VFK183P
(Link to Original site)
Representative DNA sequence
>VFK183 (VFK183Q) /CSM/VF/VFK1-D/VFK183Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNCNTTTTTNGAAAAAAAAAA
XXXXXXXXXXTTGAGAATGTAAAACNAANTTTCAAGATAAANAAGGTTTTCCNCCANATC
AACAANGTTTCATTTTCGNTGGTAANCAATTAAAANATGGTNGNACTCTNTTCTGATTAC
AATATCCAAAAAGAATCANCTCTCCACTTGGTCCTCAGATTAANAGGTGGTATGCAAATN
TTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATT
GAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTA
ATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACC
CTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAA
GCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGT
AAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTC
CATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAA
ACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAA
GACAAAGAAGGTATTCCA
sequence update 2001.11.22
Translated Amino Acid sequence
KFIFIIQILNSYFIFLYIVTFHKKKKKKKXLKXXXFXKKK---

---ENVKXXFKIXKVFXXINXVSFSXVXN*xmvxlxsdyniqkesxlhlvlrlxggmqxf
vktltgktitlevegsdnienvktkiqdkegippdqqrlifagkqledgrtlsdyniqke
stlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagk
qledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqd
kegip


Translated Amino Acid sequence (All Frames)
Frame A:
KFIFIIQILNSYFIFLYIVTFHKKKKKKKXLKXXXFXKKK---

---lrm*nxxsr*xrfsxxstxfhfrw*xikxwxxsxlitiskknxlstwssd*xvvckx
lskh*lvrpsllklraqiilkmlkqrfktkkvshqtnkd*fslvnn*kmvvlslittfkr
nplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspv
nnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfk
tkkvf

Frame B:
nsfllyky*ihilffyil*hfikkkkkkkx*kxxfxekk---

---*ecktxfqdkxgfppxqqxfifxgxqlkxgxtlf*lqypkrixsplgpqixrwyanx
cqninw*dhhs*s*glr*y*kc*nkdsrqrryptrptkinfrw*tirrwsysl*lqhskg
ihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*
tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsr
qrrys

Frame C:
ihfyytnikfifyffiycnis*kkkkkkkxkkxxfxkkk---

---ENVKXXFKIXKVFXXINXVSFSXVXN*xmvxlxsdyniqkesxlhlvlrlxggmqxf
vktltgktitlevegsdnienvktkiqdkegippdqqrlifagkqledgrtlsdyniqke
stlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagk
qledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqd
kegip

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK183 (VFK183Q) /CSM/VF/VFK1-D/VFK183Q.Seq.d/ 1354 0.0
SFD545 (SFD545Q) /CSM/SF/SFD5-B/SFD545Q.Seq.d/ 1308 0.0
CHE361 (CHE361Q) /CSM/CH/CHE3-C/CHE361Q.Seq.d/ 1302 0.0
CFG340 (CFG340Q) /CSM/CF/CFG3-B/CFG340Q.Seq.d/ 1302 0.0
AFI524 (AFI524Q) /CSM/AF/AFI5-A/AFI524Q.Seq.d/ 1300 0.0
SFK754 (SFK754Q) /CSM/SF/SFK7-C/SFK754Q.Seq.d/ 1294 0.0
SFF471 (SFF471Q) /CSM/SF/SFF4-C/SFF471Q.Seq.d/ 1294 0.0
CFF239 (CFF239Q) /CSM/CF/CFF2-B/CFF239Q.Seq.d/ 1294 0.0
SFF529 (SFF529Q) /CSM/SF/SFF5-B/SFF529Q.Seq.d/ 1292 0.0
CFJ521 (CFJ521Q) /CSM/CF/CFJ5-A/CFJ521Q.Seq.d/ 1292 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ433417) Dictyostelium discoideum cDNA clone:ddv21e21, 3' ... 1354 0.0 1
(BJ375887) Dictyostelium discoideum cDNA clone:ddc20m08, 3' ... 1283 0.0 2
(BJ374831) Dictyostelium discoideum cDNA clone:ddc16o11, 3' ... 1279 0.0 1
(BJ402596) Dictyostelium discoideum cDNA clone:dds17o07, 3' ... 1273 0.0 1
(BJ347182) Dictyostelium discoideum cDNA clone:dda26i07, 3' ... 1271 0.0 1
(BJ376058) Dictyostelium discoideum cDNA clone:ddc21f03, 3' ... 1259 0.0 2
(BJ340682) Dictyostelium discoideum cDNA clone:dda3f12, 3' e... 1259 0.0 1
(BJ379173) Dictyostelium discoideum cDNA clone:ddc34c02, 3' ... 1251 0.0 1
(BJ401255) Dictyostelium discoideum cDNA clone:dds22l13, 3' ... 1225 0.0 2
(BJ399993) Dictyostelium discoideum cDNA clone:dds8i11, 3' e... 1225 0.0 2
dna update 2009. 2. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 401 e-115
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 401 e-115
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 401 e-115
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 397 e-113
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 386 e-111
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 384 e-110
AM270080_13(AM270080|pid:none) Aspergillus niger contig An04c019... 382 e-110
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 384 e-109
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 384 e-109
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 384 e-109
protein update 2009. 6.22
PSORT

psg: 0.96 gvh: 0.32 alm: 0.26 top: 0.97 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.50 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VFK183 is nuc

5' end seq. ID VFK183F
5' end seq.
>VFK183F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNCNTTTTTNGAAAAAAAAAA
NNNNNNNNNN
Length of 5' end seq. 130
3' end seq. ID VFK183Z
3' end seq.
>VFK183Z.Seq
NNNNNNNNNNTTGAGAATGTAAAACNAANTTTCAAGATAAANAAGGTTTTCCNCCANATC
AACAANGTTTCATTTTCGNTGGTAANCAATTAAAANATGGTNGNACTCTNTTCTGATTAC
AATATCCAAAAAGAATCANCTCTCCACTTGGTCCTCAGATTAANAGGTGGTATGCAAATN
TTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATT
GAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTA
ATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACC
CTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAA
GCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGT
AAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTC
CATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAA
ACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAA
GACAAAGAAGGTATTCCA
Length of 3' end seq. 738
Connected seq. ID VFK183P
Connected seq.
>VFK183P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNCNTTTTTNGAAAAAAAAAA
----------TTGAGAATGTAAAACNAANTTTCAAGATAAANAAGGTTTTCCNCCANATC
AACAANGTTTCATTTTCGNTGGTAANCAATTAAAANATGGTNGNACTCTNTTCTGATTAC
AATATCCAAAAAGAATCANCTCTCCACTTGGTCCTCAGATTAANAGGTGGTATGCAAATN
TTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATT
GAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTA
ATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACC
CTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAA
GCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGT
AAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTC
CATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAA
ACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAA
GACAAAGAAGGTATTCCA
Length of connected seq. 848
Full length Seq ID -
Full length Seq. -
Length of full length seq. -