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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM794
Library AF
(Link to library)
Clone ID AFM794
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM794P
(Link to Original site)
Representative DNA sequence 
>AFM794 (AFM794Q) /CSM/AF/AFM7-D/AFM794Q.Seq.d/
TAATAATAATTATTATTATAATAATAATAATAATTATAGTAATAATTATTATAATAATAA
TTATAATAATAATAATTTGAATAATAATTATACCAGTTGTAGTAATCATCTCAACCTAAC
TCCTGAAGAATCTATGATTGATCAACCAAAGGAAAAAGAACAACCTATGCCTTTCTCTGC
ACAAGACAGAACTTTGGCAGTTACTACACCGTCCAATCTAGCAATAGAATCTCAAGTTAC
CGATCTGTTGAGAGAGGATGAGGAACCATCTGCTGATGCATCGCCAGCTACTACCTTTTC
CATACAATTAATCGCCAAAGGAGGGCATGTTATTTACCTTAACCATCCAAATGCTCAAGT
AGCTACTCTCAAGGTTCAACTACCTGATACCGCACCATCCACTTTAGAATTACCATTACA
AATAACTCCAGCAATAGACGTAAAGCAACTTGCAATATCGACCCATGATTACCAAAAAAA
TCGGGTGAAGGTATGCGTACCTCGATTAGATCCTAAGGGTAAAGGATATGTACGTATTGA
AGCATATGGTTTAAAAGGAGGATCAGGCGGTATAGAACTAGATACAGAGAAATTGATTAC
AGATATCGTATCAXXXXXXXXXXCTAAGGGTAAAGGATATGTACGTATTGAAGCATATGG
TTTAAAAGGAGGATCAGGCGGTATAGAACTAGATACAGAGAAATTGATTACAGATATCGT
ATCAGGGTTCCATTTAGTAGGCATGCAGCCTTCTTCGGAAATGATCAATAGTTGGCGTCC
TTTTTTAAGAGACTTCTCTACTACACTCTCCAATATGACTCTGGACTTAAAGGATACCCC
TTCTCCGATGTCAATTAATTCTTATGATCCAGGTAACTATCGCAGTACCTTTGAGCGAAT
AGCGAGTCATGCTACTAATAGAAGAATTACCCTCACACGATATGGGGCAGCCTACTTGCA
TATCGTGAGCCAAATAAGAACAAAGATCAAACAACAGCAAAGCCTTCCCATTGACCCAGT
TGAGTATCCTTCCCATAGCTATACGGTAAGCTTACAACCCAACTTATTGCATATGCTACC
CTTGGTGGCCTCGCTGAATCATCTCTATGCTACGCCCATAGGAGGAGAATTTACCTTTGA
TGTAGGTAGTTTAATGCAGATAGCCCAGGTCGCTGTATGCTTTCATCCTGCTTTTTTAAA
TTTTGAAAATTCTAAAAGAATTACTTCTACTGGCATCAACCTAGATGATTTACTCACTGC
TGCTTTACAAGAAACCACTTTGCAAGAGACGCAAGAAAGCAAAGGACAACA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
NNNYYYNNNNNYSNNYYNNNYNNNNLNNNYTSCSNHLNLTPEESMIDQPKEKEQPMPFSA
QDRTLAVTTPSNLAIESQVTDLLREDEEPSADASPATTFSIQLIAKGGHVIYLNHPNAQV
ATLKVQLPDTAPSTLELPLQITPAIDVKQLAISTHDYQKNRVKVCVPRLDPKGKGYVRIE
AYGLKGGSGGIELDTEKLITDIVS---

---KGKGYVRIEAYGLKGGSGGIELDTEKLITDIVSGFHLVGMQPSSEMINSWRPFLRDF
STTLSNMTLDLKDTPSPMSINSYDPGNYRSTFERIASHATNRRITLTRYGAAYLHIVSQI
RTKIKQQQSLPIDPVEYPSHSYTVSLQPNLLHMLPLVASLNHLYATPIGGEFTFDVGSLM
QIAQVAVCFHPAFLNFENSKRITSTGINLDDLLTAALQETTLQETQESKGQ
Translated Amino Acid sequence (All Frames) 
Frame A:
***lll*****l***ll***l****fe**lyql**ssqpns*riyd*stkgkrttyaflc
trqnfgsyytvqssnrissyrsverg*gtic*ciasyylfhtinrqrracylp*pskcss
sysqgstt*yrtihfrititnnssnrrkatcnidp*lpkksgegmrtsirs*g*ricty*
siwfkrrirryrtryreidyryri---

---lrvkdmyvlkhmv*kedqav*n*iqrn*lqisyqgsi**acsllrk*sivgvlf*et
sllhspi*lwt*ripllrcqlilmiqvtiavplse*rvmllieelpshdmgqptcis*ak
*eqrsnnskafpltqlsilpiair*aynptycicypwwpr*iismlrp*eenlplm*vv*
cr*prslyafillf*ilkilkellllast*miyslllykkplckrrkkakdn

Frame B:
NNNYYYNNNNNYSNNYYNNNYNNNNLNNNYTSCSNHLNLTPEESMIDQPKEKEQPMPFSA
QDRTLAVTTPSNLAIESQVTDLLREDEEPSADASPATTFSIQLIAKGGHVIYLNHPNAQV
ATLKVQLPDTAPSTLELPLQITPAIDVKQLAISTHDYQKNRVKVCVPRLDPKGKGYVRIE
AYGLKGGSGGIELDTEKLITDIVS---

---*g*ricty*siwfkrrirryrtryreidyryrirvpfsrhaaffgndq*lasffkrl
lyytlqydsglkgypfsdvn*fl*sr*lsqyl*ansescy**knyphtiwgsllayrepn
knkdqttakpsh*ps*vsfp*lygklttqliayatlgglaesslcyahrrriyl*cr*fn
adspgrcmlsscffkf*kf*knyfywhqpr*fthccftrnhfardarkqrtt

Frame C:
iiiiiiiiiiiiviiiiiiiiiiii*iiiipvvviist*llknl*linqrkknnlclslh
ktelwqllhrpi*q*nlklpic*ermrnhllmhrqllpfpyn*spkegmlftltiqmlk*
llsrfnyliphhpl*nyhyk*lqq*t*snlqyrpmitkkig*ryayld*ilrvkdmyvlk
hmv*kedqav*n*iqrn*lqisy---

---KGKGYVRIEAYGLKGGSGGIELDTEKLITDIVSGFHLVGMQPSSEMINSWRPFLRDF
STTLSNMTLDLKDTPSPMSINSYDPGNYRSTFERIASHATNRRITLTRYGAAYLHIVSQI
RTKIKQQQSLPIDPVEYPSHSYTVSLQPNLLHMLPLVASLNHLYATPIGGEFTFDVGSLM
QIAQVAVCFHPAFLNFENSKRITSTGINLDDLLTAALQETTLQETQESKGQ
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM794 (AFM794Q) /CSM/AF/AFM7-D/AFM794Q.Seq.d/                       2315   0.0
AFM133 (AFM133Q) /CSM/AF/AFM1-B/AFM133Q.Seq.d/                       1231   0.0
AFK411 (AFK411Q) /CSM/AF/AFK4-A/AFK411Q.Seq.d/                        991   0.0
AFC792 (AFC792Q) /CSM/AF/AFC7-D/AFC792Q.Seq.d/                        955   0.0
AHF313 (AHF313Q) /CSM/AH/AHF3-A/AHF313Q.Seq.d/                        886   0.0
AHD388 (AHD388Q) /CSM/AH/AHD3-D/AHD388Q.Seq.d/                        835   0.0
AFM859 (AFM859Q) /CSM/AF/AFM8-C/AFM859Q.Seq.d/                        805   0.0
AHL347 (AHL347Q) /CSM/AH/AHL3-B/AHL347Q.Seq.d/                        781   0.0
AHK632 (AHK632Q) /CSM/AH/AHK6-B/AHK632Q.Seq.d/                        779   0.0
AHM215 (AHM215Q) /CSM/AH/AHM2-A/AHM215Q.Seq.d/                        775   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347372) Dictyostelium discoideum cDNA clone:dda26l23, 3' ...  1364   0.0    1
(BJ346836) Dictyostelium discoideum cDNA clone:dda25a09, 3' ...  1215   0.0    2
(BJ332033) Dictyostelium discoideum cDNA clone:dda37p21, 5' ...   827   0.0    2
(BJ329969) Dictyostelium discoideum cDNA clone:dda26l23, 5' ...   755   0.0    2
(BJ324548) Dictyostelium discoideum cDNA clone:dda6h23, 5' e...   944   0.0    1
(BJ332997) Dictyostelium discoideum cDNA clone:dda41j03, 5' ...   755   0.0    2
(BJ329864) Dictyostelium discoideum cDNA clone:dda26f16, 5' ...   755   0.0    2
(BJ327598) Dictyostelium discoideum cDNA clone:dda21f04, 5' ...   755   0.0    2
(BJ336304) Dictyostelium discoideum cDNA clone:dda53n11, 5' ...   755   0.0    2
(BJ336022) Dictyostelium discoideum cDNA clone:dda52o08, 5' ...   755   0.0    2
dna update 2009. 4.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001102_760(CP001102|pid:none) Candidatus Amoebophilus asiaticu...    50   1e-04
CP001102_489(CP001102|pid:none) Candidatus Amoebophilus asiaticu...    38   0.67
X76043_1(X76043|pid:none) D.melanogaster DmTnC 41C mRNA for trop...    38   0.87
AY292259_1(AY292259|pid:none) Drosophila subobscura troponin C 4...    37   1.5
CP000607_417(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2...    36   3.3
BA000021_173(BA000021|pid:none) Wigglesworthia glossinidia endos...    35   5.6
CP001291_2956(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    35   5.6
CP001102_977(CP001102|pid:none) Candidatus Amoebophilus asiaticu...    35   5.6
BC033372_1(BC033372|pid:none) Homo sapiens AHNAK nucleoprotein 2...    35   7.4
AB095939_1(AB095939|pid:none) Homo sapiens mRNA for KIAA2019 pro...    35   7.4
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM794 is

5' end seq. ID AFM794F
5' end seq. 
>AFM794F.Seq
TAATAATAATTATTATTATAATAATAATAATAATTATAGTAATAATTATTATAATAATAA
TTATAATAATAATAATTTGAATAATAATTATACCAGTTGTAGTAATCATCTCAACCTAAC
TCCTGAAGAATCTATGATTGATCAACCAAAGGAAAAAGAACAACCTATGCCTTTCTCTGC
ACAAGACAGAACTTTGGCAGTTACTACACCGTCCAATCTAGCAATAGAATCTCAAGTTAC
CGATCTGTTGAGAGAGGATGAGGAACCATCTGCTGATGCATCGCCAGCTACTACCTTTTC
CATACAATTAATCGCCAAAGGAGGGCATGTTATTTACCTTAACCATCCAAATGCTCAAGT
AGCTACTCTCAAGGTTCAACTACCTGATACCGCACCATCCACTTTAGAATTACCATTACA
AATAACTCCAGCAATAGACGTAAAGCAACTTGCAATATCGACCCATGATTACCAAAAAAA
TCGGGTGAAGGTATGCGTACCTCGATTAGATCCTAAGGGTAAAGGATATGTACGTATTGA
AGCATATGGTTTAAAAGGAGGATCAGGCGGTATAGAACTAGATACAGAGAAATTGATTAC
AGATATCGTATCAXXXXXXXXXX
Length of 5' end seq. 623
3' end seq. ID AFM794Z
3' end seq. 
>AFM794Z.Seq
XXXXXXXXXXCTAAGGGTAAAGGATATGTACGTATTGAAGCATATGGTTTAAAAGGAGGA
TCAGGCGGTATAGAACTAGATACAGAGAAATTGATTACAGATATCGTATCAGGGTTCCAT
TTAGTAGGCATGCAGCCTTCTTCGGAAATGATCAATAGTTGGCGTCCTTTTTTAAGAGAC
TTCTCTACTACACTCTCCAATATGACTCTGGACTTAAAGGATACCCCTTCTCCGATGTCA
ATTAATTCTTATGATCCAGGTAACTATCGCAGTACCTTTGAGCGAATAGCGAGTCATGCT
ACTAATAGAAGAATTACCCTCACACGATATGGGGCAGCCTACTTGCATATCGTGAGCCAA
ATAAGAACAAAGATCAAACAACAGCAAAGCCTTCCCATTGACCCAGTTGAGTATCCTTCC
CATAGCTATACGGTAAGCTTACAACCCAACTTATTGCATATGCTACCCTTGGTGGCCTCG
CTGAATCATCTCTATGCTACGCCCATAGGAGGAGAATTTACCTTTGATGTAGGTAGTTTA
ATGCAGATAGCCCAGGTCGCTGTATGCTTTCATCCTGCTTTTTTAAATTTTGAAAATTCT
AAAAGAATTACTTCTACTGGCATCAACCTAGATGATTTACTCACTGCTGCTTTACAAGAA
ACCACTTTGCAAGAGACGCAAGAAAGCAAAGGACAACA
Length of 3' end seq. 698
Connected seq. ID AFM794P
Connected seq. 
>AFM794P.Seq
TAATAATAATTATTATTATAATAATAATAATAATTATAGTAATAATTATTATAATAATAA
TTATAATAATAATAATTTGAATAATAATTATACCAGTTGTAGTAATCATCTCAACCTAAC
TCCTGAAGAATCTATGATTGATCAACCAAAGGAAAAAGAACAACCTATGCCTTTCTCTGC
ACAAGACAGAACTTTGGCAGTTACTACACCGTCCAATCTAGCAATAGAATCTCAAGTTAC
CGATCTGTTGAGAGAGGATGAGGAACCATCTGCTGATGCATCGCCAGCTACTACCTTTTC
CATACAATTAATCGCCAAAGGAGGGCATGTTATTTACCTTAACCATCCAAATGCTCAAGT
AGCTACTCTCAAGGTTCAACTACCTGATACCGCACCATCCACTTTAGAATTACCATTACA
AATAACTCCAGCAATAGACGTAAAGCAACTTGCAATATCGACCCATGATTACCAAAAAAA
TCGGGTGAAGGTATGCGTACCTCGATTAGATCCTAAGGGTAAAGGATATGTACGTATTGA
AGCATATGGTTTAAAAGGAGGATCAGGCGGTATAGAACTAGATACAGAGAAATTGATTAC
AGATATCGTATCA----------CTAAGGGTAAAGGATATGTACGTATTGAAGCATATGG
TTTAAAAGGAGGATCAGGCGGTATAGAACTAGATACAGAGAAATTGATTACAGATATCGT
ATCAGGGTTCCATTTAGTAGGCATGCAGCCTTCTTCGGAAATGATCAATAGTTGGCGTCC
TTTTTTAAGAGACTTCTCTACTACACTCTCCAATATGACTCTGGACTTAAAGGATACCCC
TTCTCCGATGTCAATTAATTCTTATGATCCAGGTAACTATCGCAGTACCTTTGAGCGAAT
AGCGAGTCATGCTACTAATAGAAGAATTACCCTCACACGATATGGGGCAGCCTACTTGCA
TATCGTGAGCCAAATAAGAACAAAGATCAAACAACAGCAAAGCCTTCCCATTGACCCAGT
TGAGTATCCTTCCCATAGCTATACGGTAAGCTTACAACCCAACTTATTGCATATGCTACC
CTTGGTGGCCTCGCTGAATCATCTCTATGCTACGCCCATAGGAGGAGAATTTACCTTTGA
TGTAGGTAGTTTAATGCAGATAGCCCAGGTCGCTGTATGCTTTCATCCTGCTTTTTTAAA
TTTTGAAAATTCTAAAAGAATTACTTCTACTGGCATCAACCTAGATGATTTACTCACTGC
TGCTTTACAAGAAACCACTTTGCAAGAGACGCAAGAAAGCAAAGGACAACA
Length of connected seq. 1301
Full length Seq ID -
Full length Seq. -
Length of full length seq. -