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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFK156
Library VF
(Link to library)
Clone ID VFK156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13942-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFK156 (VFK156Q) /CSM/VF/VFK1-C/VFK156Q.Seq.d/
XXXXXXXXXXAATACAAAGTACTTGATTTTCATTAATACGGAATGCATTTAAATTCTTTT
TATTTAAANCACGTTCATCAATTGTATCTGGTACAGCATCATTAATTAATTTACATAATA
ATAANCCATCATTACATGCTGCAAAGAATTTATCACCATCTTCTGGAATTGGTAATCTTG
ATTTGAGATCAACATCTTTTGCTAAACAATTGTTAATCCAATCAATGTAGGCAACTTTCT
CTTCATCGGAATAGGAATGTTGTACACCAGATGCTGTTGAACCAGAATAACCACCAATGG
TATTGACAGCGCCAACTTTTTTAACAGCTGATGCAAATGCTGGTGATGCATTGGCAGAGT
GTTGTCTTGCTTTTTGCATAACTTGGAGGAACTCTTTGAAATCAATTGAACCATTTCCAT
CGGTATCAACTTCTT
sequence update 2001.11.22
Translated Amino Acid sequence 
---iqst*FSLIRNAFKFFLFKXRSSIVSGTASLINLHNNXPSLHAAKNLSPSSGIGNLD
LRSTSFAKQLLIQSM*atfssse*ecctpdavepe*ppmvltaptfltadanagdalaec
clafcitwrnslksiepfpsvsts
Translated Amino Acid sequence (All Frames) 
Frame A:
---iqst*FSLIRNAFKFFLFKXRSSIVSGTASLINLHNNXPSLHAAKNLSPSSGIGNLD
LRSTSFAKQLLIQSM*atfssse*ecctpdavepe*ppmvltaptfltadanagdalaec
clafcitwrnslksiepfpsvsts


Frame B:
---ykvldfh*ygmhlnsfylxhvhqlylvqhh*liyiiixhhymlqriyhhllelvili
*dqhlllnnc*snqcrqlslhrnrnvvhqmllnqnnhqwy*qrqlf*qlmqmlvmhwqsv
vllfa*lggtl*nqlnhfhryqll


Frame C:
---tkylifinteci*ilfi*xtfinciwysiin*ft***xiitcckefitifwnw*s*f
einifc*tivnpinvgnflfigigmlytrcc*trittngidsanffns*ckcw*cigrvl
scflhnleelfein*tisiginf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFK156 (VFK156Q) /CSM/VF/VFK1-C/VFK156Q.Seq.d/                        831   0.0
AFI128 (AFI128Q) /CSM/AF/AFI1-B/AFI128Q.Seq.d/                        785   0.0
AHK247 (AHK247Q) /CSM/AH/AHK2-B/AHK247Q.Seq.d/                        210   1e-53
VHB552 (VHB552Q) /CSM/VH/VHB5-C/VHB552Q.Seq.d/                        186   2e-46
VHL736 (VHL736Q) /CSM/VH/VHL7-B/VHL736Q.Seq.d/                         40   0.027
VHH352 (VHH352Q) /CSM/VH/VHH3-C/VHH352Q.Seq.d/                         36   0.42
VFB568 (VFB568Q) /CSM/VF/VFB5-C/VFB568Q.Seq.d/                         36   0.42
SSD374 (SSD374Q) /CSM/SS/SSD3-D/SSD374Q.Seq.d/                         36   0.42
SLE674 (SLE674Q) /CSM/SL/SLE6-D/SLE674Q.Seq.d/                         36   0.42
CFD743 (CFD743Q) /CSM/CF/CFD7-B/CFD743Q.Seq.d/                         36   0.42
own update 2002.12.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(L36202) Dictyostelium discoideum fimbrin (fimA) mRNA, compl...   831   0.0    1
(BJ433389) Dictyostelium discoideum cDNA clone:ddv21o13, 3' ...   831   0.0    1
(BJ343825) Dictyostelium discoideum cDNA clone:dda17g07, 3' ...   785   0.0    1
(BJ353790) Dictyostelium discoideum cDNA clone:dda51m12, 3' ...   210   3e-50  1
(BJ437535) Dictyostelium discoideum cDNA clone:ddv34g13, 3' ...   186   5e-43  1
(BG227765) kq13a10.y1 TBN95TM-SSR Strongyloides stercoralis ...    68   3e-08  2
(DY888608) CeleSEQ5758 Cunninghamella elegans pBluescript (E...    70   7e-08  1
(DY887626) CeleSEQ4126 Cunninghamella elegans pBluescript (E...    70   7e-08  1
(DY887525) CeleSEQ3922 Cunninghamella elegans pBluescript (E...    70   7e-08  1
(DY886669) CeleSEQ2410 Cunninghamella elegans pBluescript (E...    70   7e-08  1
dna update 2009. 2. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36202_1(L36202|pid:none) Dictyostelium discoideum fimbrin (fimA...   284   6e-76
(P54680) RecName: Full=Fimbrin;                                       284   6e-76
BC167378_1(BC167378|pid:none) Xenopus tropicalis hypothetical pr...   125   6e-28
BC031083_1(BC031083|pid:none) Homo sapiens plastin 1 (I isoform)...   123   2e-27
(Q14651) RecName: Full=Plastin-1; AltName: Full=Intestine-specif...   123   2e-27
AK290316_1(AK290316|pid:none) Homo sapiens cDNA FLJ78068 complet...   123   2e-27
(A6H742) RecName: Full=Plastin-1;  &BC146105_1(BC146105|pid:none)     120   1e-26
AJ719624_1(AJ719624|pid:none) Gallus gallus mRNA for hypothetica...   120   1e-26
(Q3V0K9) RecName: Full=Plastin-1;  &AK133070_1(AK133070|pid:none...   120   2e-26
AJ720945_1(AJ720945|pid:none) Gallus gallus mRNA for hypothetica...   119   3e-26
protein update 2009. 6.22
PSORT 

 psg: 0.69  gvh: 0.48  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: plasma membrane

>> prediction for VFK156 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFK156Z
3' end seq. 
>VFK156Z.Seq
NNNNNNNNNNAATACAAAGTACTTGATTTTCATTAATACGGAATGCATTTAAATTCTTTT
TATTTAAANCACGTTCATCAATTGTATCTGGTACAGCATCATTAATTAATTTACATAATA
ATAANCCATCATTACATGCTGCAAAGAATTTATCACCATCTTCTGGAATTGGTAATCTTG
ATTTGAGATCAACATCTTTTGCTAAACAATTGTTAATCCAATCAATGTAGGCAACTTTCT
CTTCATCGGAATAGGAATGTTGTACACCAGATGCTGTTGAACCAGAATAACCACCAATGG
TATTGACAGCGCCAACTTTTTTAACAGCTGATGCAAATGCTGGTGATGCATTGGCAGAGT
GTTGTCTTGCTTTTTGCATAACTTGGAGGAACTCTTTGAAATCAATTGAACCATTTCCAT
CGGTATCAACTTCTT
Length of 3' end seq. 435
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -