VFK143
Library VF
(Link to library)
Clone ID VFK143
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16544-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFK143 (VFK143Q) /CSM/VF/VFK1-B/VFK143Q.Seq.d/
XXXXXXXXXXATGAATGGTGAATTCTCAATGTGTAGCCAAGTTTGCAAAGTCAGCAAAGT
AGTTCAAAAGAATCCATCATTCGAATGTGTTAAGAAGATCGTTTTGTGGGAAGATATCGT
TCAAACCGGTATCCTCTTTGCAATTATAAACCTCGTCTTTATTCTCATCTCTTTCTGTAA
CTATAGCTTAATTTCACTCTTTGGTTATACAGCTTTCACTGTAACTATCACCTCTATACT
TTTCCATTTAATCTCTTTAATTTTATCAAAATATGTTCAAGGTGTATCTTTAAATAATCA
ATTCACTGATCAATTAAAAACTCTCAGTTTCCATATTCATGATGCTGTCATTGAAAAACA
AGTTAATAATGTTGCTGAATTAATCAACACTGTTTTAAGTATTGCAAAGGACGTATTTGG
TTGCAAGAGTGTTTATCTCTCTGCTCAATTTGCCATCGTTTTTTATTTAATCGGTTGTTT
AAGCAAATGTTTATCAAATACTGCCATCCTCTACTTTGGTTTCCTCGTTTCCTTTGTTGT
TCCAAGACTCTACGTTGAAAAGAAAGAAGTTATTGACCAACAATTCTCTAAAGTATGTGC
TCTTGCCAAAGAACCACTTTCAAAACTCCACTCTCTCATTCCACAATCTCAAACTACCTC
AACTAAAAAATCAAACTAAATTAA
sequence update 2001.11.22
Translated Amino Acid sequence
---NGEFSMCSQVCKVSKVVQKNPSFECVKKIVLWEDIVQTGILFAIINLVFILISFCNY
SLISLFGYTAFTVTITSILFHLISLILSKYVQGVSLNNQFTDQLKTLSFHIHDAVIEKQV
NNVAELINTVLSIAKDVFGCKSVYLSAQFAIVFYLIGCLSKCLSNTAILYFGFLVSFVVP
RLYVEKKEVIDQQFSKVCALAKEPLSKLHSLIPQSQTTSTKKSN*i


Translated Amino Acid sequence (All Frames)
Frame A:
---*mvnsqcvakfaksak*fkrihhsnvlrrsfcgkisfkpvsslql*tsslfsslsvt
ia*fhslviqlsl*lsplyfsi*sl*fyqnmfkvyl*iinslin*klsvsifmmlslknk
limlln*stlf*vlqrtylvarvfisllnlpsffi*svv*anvyqilpsstlvssfpllf
qdstlkrkklltnnslkyvllpknhfqnstlsfhnlklpqlknqtkl


Frame B:
---ew*ilnv*pslqsqqssskesiirmc*edrfvgryrsnryplcnykprlyshlfl*l
*lnftlwlysfhcnyhlytfpfnlfnfikicsrcifk*sih*siknsqfpys*cch*kts
**cc*inqhcfkyckgriwlqeclslcsichrflfnrlfkqmfikychpllwfprflccs
ktlr*kersy*ptil*smcscqrttfktplshstisnyln*kikln*


Frame C:
---NGEFSMCSQVCKVSKVVQKNPSFECVKKIVLWEDIVQTGILFAIINLVFILISFCNY
SLISLFGYTAFTVTITSILFHLISLILSKYVQGVSLNNQFTDQLKTLSFHIHDAVIEKQV
NNVAELINTVLSIAKDVFGCKSVYLSAQFAIVFYLIGCLSKCLSNTAILYFGFLVSFVVP
RLYVEKKEVIDQQFSKVCALAKEPLSKLHSLIPQSQTTSTKKSN*i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK143 (VFK143Q) /CSM/VF/VFK1-B/VFK143Q.Seq.d/ 1336 0.0
VFG843 (VFG843Q) /CSM/VF/VFG8-B/VFG843Q.Seq.d/ 1336 0.0
VFG780 (VFG780Q) /CSM/VF/VFG7-D/VFG780Q.Seq.d/ 1336 0.0
SLC352 (SLC352Q) /CSM/SL/SLC3-C/SLC352Q.Seq.d/ 1336 0.0
SFE831 (SFE831Q) /CSM/SF/SFE8-B/SFE831Q.Seq.d/ 1336 0.0
AHD492 (AHD492Q) /CSM/AH/AHD4-D/AHD492Q.Seq.d/ 1336 0.0
AFG189 (AFG189Q) /CSM/AF/AFG1-D/AFG189Q.Seq.d/ 1336 0.0
VHN302 (VHN302Q) /CSM/VH/VHN3-A/VHN302Q.Seq.d/ 1330 0.0
AFD644 (AFD644Q) /CSM/AF/AFD6-B/AFD644Q.Seq.d/ 1326 0.0
VFN288 (VFN288Q) /CSM/VF/VFN2-D/VFN288Q.Seq.d/ 1322 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ433271) Dictyostelium discoideum cDNA clone:ddv21e11, 3' ... 1336 0.0 1
(BJ431476) Dictyostelium discoideum cDNA clone:ddv14f12, 3' ... 1336 0.0 1
(BJ397965) Dictyostelium discoideum cDNA clone:dds10n08, 3' ... 1336 0.0 1
(BJ349852) Dictyostelium discoideum cDNA clone:dda37h24, 3' ... 1336 0.0 1
(BJ342383) Dictyostelium discoideum cDNA clone:dda13a23, 3' ... 1336 0.0 1
(BJ444645) Dictyostelium discoideum cDNA clone:ddv57d01, 3' ... 1330 0.0 1
(BJ341824) Dictyostelium discoideum cDNA clone:dda8g12, 3' e... 1326 0.0 1
(BJ429664) Dictyostelium discoideum cDNA clone:ddv4p09, 3' e... 1320 0.0 1
(BJ434064) Dictyostelium discoideum cDNA clone:ddv23e20, 3' ... 1318 0.0 1
(BJ433196) Dictyostelium discoideum cDNA clone:ddv21f05, 3' ... 1318 0.0 1
dna update 2009. 2. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK297492_1(AK297492|pid:none) Homo sapiens cDNA FLJ55108 complet... 54 6e-06
EF061090_1(EF061090|pid:none) Danio rerio Nogo-C1 mRNA, complete... 54 6e-06
AY555032_1(AY555032|pid:none) Takifugu rubripes reticulon 4-N (R... 53 7e-06
AY555046_1(AY555046|pid:none) Danio rerio reticulon 5-a1(265/158... 53 1e-05
L10334_1(L10334|pid:none) Homo sapiens neuroendocrine-specific p... 53 1e-05
AY555049_1(AY555049|pid:none) Danio rerio reticulon 5-a2 (rtn5) ... 53 1e-05
BC090486_1(BC090486|pid:none) Danio rerio reticulon 1a, mRNA (cD... 53 1e-05
BC163936_1(BC163936|pid:none) Danio rerio reticulon 1a, mRNA (cD... 53 1e-05
(Q5IS59) RecName: Full=Reticulon-1; &AY665269_1(AY665269|pid:no... 53 1e-05
AY555029_1(AY555029|pid:none) Takifugu rubripes reticulon 4-L1 (... 53 1e-05
protein update 2009. 6.22
PSORT

psg: 0.75 gvh: 0.52 alm: 0.18 top: 0.70 tms: 0.27 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

28.0 %: plasma membrane
24.0 %: endoplasmic reticulum
16.0 %: nuclear
12.0 %: vacuolar
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for VFK143 is pla

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFK143Z
3' end seq.
>VFK143Z.Seq
NNNNNNNNNNATGAATGGTGAATTCTCAATGTGTAGCCAAGTTTGCAAAGTCAGCAAAGT
AGTTCAAAAGAATCCATCATTCGAATGTGTTAAGAAGATCGTTTTGTGGGAAGATATCGT
TCAAACCGGTATCCTCTTTGCAATTATAAACCTCGTCTTTATTCTCATCTCTTTCTGTAA
CTATAGCTTAATTTCACTCTTTGGTTATACAGCTTTCACTGTAACTATCACCTCTATACT
TTTCCATTTAATCTCTTTAATTTTATCAAAATATGTTCAAGGTGTATCTTTAAATAATCA
ATTCACTGATCAATTAAAAACTCTCAGTTTCCATATTCATGATGCTGTCATTGAAAAACA
AGTTAATAATGTTGCTGAATTAATCAACACTGTTTTAAGTATTGCAAAGGACGTATTTGG
TTGCAAGAGTGTTTATCTCTCTGCTCAATTTGCCATCGTTTTTTATTTAATCGGTTGTTT
AAGCAAATGTTTATCAAATACTGCCATCCTCTACTTTGGTTTCCTCGTTTCCTTTGTTGT
TCCAAGACTCTACGTTGAAAAGAAAGAAGTTATTGACCAACAATTCTCTAAAGTATGTGC
TCTTGCCAAAGAACCACTTTCAAAACTCCACTCTCTCATTCCACAATCTCAAACTACCTC
AACTAAAAAATCAAACTAAATTAA
Length of 3' end seq. 684
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -