AFM791
Library AF
(Link to library)
Clone ID AFM791
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM791P
(Link to Original site)
Representative DNA sequence
>AFM791 (AFM791Q) /CSM/AF/AFM7-D/AFM791Q.Seq.d/
ATGGTTTAGAAAAGAAAGGTTCTGGTGAAAAGAATATTTTAATTTTCGATTTAGGTGGTG
GTACATTTGATGTTTCTCTCCTTACCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCG
CTGGTGATACTCATTTAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTG
ATGAATTTAAACGTAAACATAAAAAAGATATTATGGGTAATCAACGTGCTGTTCGTCGTT
TAAGAACTGCTTGTGAACGTGCCAAAAGAACTCTTTCATCATCTGCTCAAGCTTCAATTG
AAATTGATTCACTCTTTGAAGGTATTGATTTCTATACTTCAATTACTAGAGCACGTTTTG
AAGAACTCTGTGCTGATCTTTTCCGTGGTTGTTTAGATCCAGTTGAAAAAGTATTAAAAG
ATAGTAAATTGGATAAGAAATCAATTCATGAAATTGTTTTAGTTGGTGGTTCAACTCGTA
TTCCAAAGGTACAACAATTATTACAAGAATTTTTCAATGGTAAAGAATTGAATAAATCAA
TTAATCCAGATGAAGCTGTTGCTTATGGTGCCCGCTGTACAAGCTGCAATTCTTTCAXXX
XXXXXXXGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGAC
CAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGG
TGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGC
TGAAGATAAATCAACTGGTAACAAACAAAAGACTACAATTACCAATGATAAAGGTCGTCT
TTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGA
ACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAA
AAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTAT
TGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGA
TGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACT
CTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTC
ACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAA
CATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTCTC
ATATA
sequence update 2009. 4. 3
Translated Amino Acid sequence
GLEKKGSGEKNILIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDFDNRLVSHFVD
EFKRKHKKDIMGNQRAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFE
ELCADLFRGCLDPVEKVLKDSKLDKKSIHEIVLVGGSTRIPKVQQLLQEFFNGKELNKSI
NPDEAVAYGARCTSCNSF---

---DNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVS
AEDKSTGNKQKTTITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTV
KNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSK
LYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sf
sy


Translated Amino Acid sequence (All Frames)
Frame A:
mv*krkvlvkrif*fsi*vvvhlmflslplkmvylklkpplvili*vvkiliivsfltll
mnlnvnikkilwvinvlfvv*ellvnvpkelfhhllklqlklihslkvlisilqllehvl
knsvlifsvvv*iqlkky*kivnwirnqfmklf*lvvqlvfqrynnyyknfsmvkn*inq
liqmklllmvpavqaails---

---DNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVS
AEDKSTGNKQKTTITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTV
KNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSK
LYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sf
sy

Frame B:
wfrkerfw*keyfnfrfrwwyi*cfspyh*rwci*s*shrw*ysfrw*rf**ssrfslc*
*i*t*t*kryyg*stccssfkncl*tcqknsfiicssfn*n*ftl*ry*flyfny*stf*
rtlc*sfpwlfrss*ksikr**ig*eins*ncfswwfnsyskgttiitrifqw*rie*in
*sr*scclwcplyklqff---

---iinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*myq
lkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsll
kiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*vn
sikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk**vskinkas
hi

Frame C:
GLEKKGSGEKNILIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDFDNRLVSHFVD
EFKRKHKKDIMGNQRAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFE
ELCADLFRGCLDPVEKVLKDSKLDKKSIHEIVLVGGSTRIPKVQQLLQEFFNGKELNKSI
NPDEAVAYGARCTSCNSF---

---*strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkcis
*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc*
kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*t
lsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidflknnklvksikll
i

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM791 (AFM791Q) /CSM/AF/AFM7-D/AFM791Q.Seq.d/ 2567 0.0
VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/ 1415 0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/ 1415 0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/ 1415 0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/ 1415 0.0
VHP420 (VHP420Q) /CSM/VH/VHP4-A/VHP420Q.Seq.d/ 1415 0.0
VHP236 (VHP236Q) /CSM/VH/VHP2-B/VHP236Q.Seq.d/ 1415 0.0
VHP232 (VHP232Q) /CSM/VH/VHP2-B/VHP232Q.Seq.d/ 1415 0.0
VHP224 (VHP224Q) /CSM/VH/VHP2-A/VHP224Q.Seq.d/ 1415 0.0
VHP111 (VHP111Q) /CSM/VH/VHP1-A/VHP111Q.Seq.d/ 1415 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ347338) Dictyostelium discoideum cDNA clone:dda26f23, 3' ... 1421 0.0 1
(X75263) D.discoideum (AX3) mRNA for heat shock cognate prot... 1413 0.0 1
(BJ446704) Dictyostelium discoideum cDNA clone:ddv63g16, 3' ... 1413 0.0 1
(BJ446275) Dictyostelium discoideum cDNA clone:ddv62p03, 3' ... 1413 0.0 1
(BJ446228) Dictyostelium discoideum cDNA clone:ddv62f05, 3' ... 1413 0.0 1
(BJ446038) Dictyostelium discoideum cDNA clone:ddv61o08, 3' ... 1413 0.0 1
(BJ446016) Dictyostelium discoideum cDNA clone:ddv61j10, 3' ... 1413 0.0 1
(BJ446000) Dictyostelium discoideum cDNA clone:ddv61g10, 3' ... 1413 0.0 1
(BJ445963) Dictyostelium discoideum cDNA clone:ddv61o06, 3' ... 1413 0.0 1
(BJ445929) Dictyostelium discoideum cDNA clone:ddv61h06, 3' ... 1413 0.0 1
dna update 2009. 4.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB170103_1(AB170103|pid:none) Macaca fascicularis brain cDNA clo... 246 e-130
EU684308_1(EU684308|pid:none) Exorista civilis heat shock protei... 275 e-125
(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 355 2e-96
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 355 2e-96
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 330 5e-89
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 327 6e-88
BC121673_1(BC121673|pid:none) Xenopus tropicalis heat shock 70kD... 313 1e-83
(P17879) RecName: Full=Heat shock 70 kDa protein 1B; AltName: Fu... 311 3e-83
AK171820_1(AK171820|pid:none) Mus musculus activated spleen cDNA... 311 3e-83
(Q61696) RecName: Full=Heat shock 70 kDa protein 1A; AltName: Fu... 311 3e-83
protein update 2009. 4. 6
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM791 is

5' end seq. ID AFM791F
5' end seq.
>AFM791F.Seq
ATGGTTTAGAAAAGAAAGGTTCTGGTGAAAAGAATATTTTAATTTTCGATTTAGGTGGTG
GTACATTTGATGTTTCTCTCCTTACCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCG
CTGGTGATACTCATTTAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTG
ATGAATTTAAACGTAAACATAAAAAAGATATTATGGGTAATCAACGTGCTGTTCGTCGTT
TAAGAACTGCTTGTGAACGTGCCAAAAGAACTCTTTCATCATCTGCTCAAGCTTCAATTG
AAATTGATTCACTCTTTGAAGGTATTGATTTCTATACTTCAATTACTAGAGCACGTTTTG
AAGAACTCTGTGCTGATCTTTTCCGTGGTTGTTTAGATCCAGTTGAAAAAGTATTAAAAG
ATAGTAAATTGGATAAGAAATCAATTCATGAAATTGTTTTAGTTGGTGGTTCAACTCGTA
TTCCAAAGGTACAACAATTATTACAAGAATTTTTCAATGGTAAAGAATTGAATAAATCAA
TTAATCCAGATGAAGCTGTTGCTTATGGTGCCCGCTGTACAAGCTGCAATTCTTTCAXXX
XXXXXXX
Length of 5' end seq. 607
3' end seq. ID AFM791Z
3' end seq.
>AFM791Z.Seq
XXXXXXXXXXGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTAT
GACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAG
AGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATC
AGCTGAAGATAAATCAACTGGTAACAAACAAAAGACTACAATTACCAATGATAAAGGTCG
TCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGA
TGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGT
TAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAAC
TATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAA
GGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAA
ACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGA
TTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGA
AAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTT
CTCATATA
Length of 3' end seq. 728
Connected seq. ID AFM791P
Connected seq.
>AFM791P.Seq
ATGGTTTAGAAAAGAAAGGTTCTGGTGAAAAGAATATTTTAATTTTCGATTTAGGTGGTG
GTACATTTGATGTTTCTCTCCTTACCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCG
CTGGTGATACTCATTTAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTG
ATGAATTTAAACGTAAACATAAAAAAGATATTATGGGTAATCAACGTGCTGTTCGTCGTT
TAAGAACTGCTTGTGAACGTGCCAAAAGAACTCTTTCATCATCTGCTCAAGCTTCAATTG
AAATTGATTCACTCTTTGAAGGTATTGATTTCTATACTTCAATTACTAGAGCACGTTTTG
AAGAACTCTGTGCTGATCTTTTCCGTGGTTGTTTAGATCCAGTTGAAAAAGTATTAAAAG
ATAGTAAATTGGATAAGAAATCAATTCATGAAATTGTTTTAGTTGGTGGTTCAACTCGTA
TTCCAAAGGTACAACAATTATTACAAGAATTTTTCAATGGTAAAGAATTGAATAAATCAA
TTAATCCAGATGAAGCTGTTGCTTATGGTGCCCGCTGTACAAGCTGCAATTCTTTCA---
-------GATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGAC
CAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGG
TGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGC
TGAAGATAAATCAACTGGTAACAAACAAAAGACTACAATTACCAATGATAAAGGTCGTCT
TTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGA
ACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAA
AAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTAT
TGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGA
TGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACT
CTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTC
ACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAA
CATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTCTC
ATATA
Length of connected seq. 1315
Full length Seq ID -
Full length Seq. -
Length of full length seq. -