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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFJ896
Library VF
(Link to library)
Clone ID VFJ896
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10832-1
Original site URL
Representative seq. ID VFJ896P
(Link to Original site)
Representative DNA sequence 
>VFJ896 (VFJ896Q) /CSM/VF/VFJ8-D/VFJ896Q.Seq.d/
ATATTTTATCGCCAAACGAAAAGTGAACTCATAATACACACAAAAATGAATAATNAGGCG
GAGCTGTTGCAGCAAATGGCCAAAGACCACAAGCTCAACAACAACAACAACAAGGTGGTA
TAATGGGAATTATTTCAACATTAATTAGATTTATGGCAATTTATTATATTGCAAGTTTTG
CTCTTTCCAAATTTTTAGGTACAGGTAATAATAATAATAATGGAGGTGTTGTTTTAAATA
ATAATAATGGTACTACAAATACATCAATACCATCAAATTCAGTTAGATTAGCAAATTCAT
GGCCAGAAGGTATTGAATTTAATATGAAAGTTTATCTATCAACTTCAAATGAAACTGTTG
GAGATTGGTTAGTTTGGGAACAAGATAAATTATCTTATGATTGGAAAGATAGTAACACAA
TTCCAACTAAAAACATTACATTTGATACAACACCTTATTTACAAAATAATGGCTCATTAT
TCGCTCACATTATAACTTCAAGACGTGCTTATTTAAATCAACCAAAATCACAATTACATA
AAGTTCATCCATTAATTGTTTATTTACCAAAACCAAAACCAAAGGGTAAAAATTTATTAG
AAGAAAAATCAAAAGATGAACCAGAAGTCGAATATGATCCAACTGAATTAATTTCATATT
GGAAAXXXXXXXXXXTTACATTAAATTGTGTTTGCATGGGTATTATATTTTTATATTTAT
TAGATAATGAAACTAGTTATATGATTTTAGCAAGTAGTGGATTTGGATTTTTAGTTGAAT
TTTGGAAATTAGGTAAAGCAATGACAATTAAAATTACATGGATGACAAGTTTACCATTAC
CAAAACGTATTGAATTCATTAATAAGGATGAATACATGTCAAAAACTAAACAATATGATG
ATATGGCAATGAAGTATTTATCATGGTTACTATTCCCATTGGTTATTGGTACTTCCATTT
ACTCATTATACTATCACGAGCATAAGAGTTGGTATTCTTGGGTAGTTTCAAGTTTAGTAC
GTACCGTTTACACTTTTGAATTCATTATGATGACACCACAATTATTCATCAATTATAAAT
TAAAATCAGTTTCACATTTACCTTGGAGAGTATTCATGTATCGTGCTTTGAATACCTTTA
TAGATGATCTATTTGCTTTCATCATTAAAATGCCATTACTTCATCGTTTAAGTTGTCTTC
GTGATGATATTATCTTTATAGTTTATCTCTATCAAAGATGGATTTATCCAGTTNATAAAA
AGAGATCACATTATGGTTCTGAAGAAGCTGAAGAAGTACAACAACAAGATAAAAAAGAAA
TTAAAGAAAAGGTTGAGGAGAGAGAGGAGGAAAAACAAGAAGAAGAAGAAGAAGAAAAAG
AAAAAGAGGAAGAATCAACAT
sequence update 2001.11.22
Translated Amino Acid sequence 
ilspnek*thnthkne*XGGAVAANGQRPQAQQQQQQGGIMGIISTLIRFMAIYYIASFA
LSKFLGTGNNNNNGGVVLNNNNGTTNTSIPSNSVRLANSWPEGIEFNMKVYLSTSNETVG
DWLVWEQDKLSYDWKDSNTIPTKNITFDTTPYLQNNGSLFAHIITSRRAYLNQPKSQLHK
VHPLIVYLPKPKPKGKNLLEEKSKDEPEVEYDPTELISYWK---

---TLNCVCMGIIFLYLLDNETSYMILASSGFGFLVEFWKLGKAMTIKITWMTSLPLPKR
IEFINKDEYMSKTKQYDDMAMKYLSWLLFPLVIGTSIYSLYYHEHKSWYSWVVSSLVRTV
YTFEFIMMTPQLFINYKLKSVSHLPWRVFMYRALNTFIDDLFAFIIKMPLLHRLSCLRDD
IIFIVYLYQRWIYPVXKKRSHYGSEEAEEVQQQDKKEIKEKVEEREEEKQEEEEEEKEKE
EEST
Translated Amino Acid sequence (All Frames) 
Frame A:
ifyrqtkseliihtkmnnxaellqqmakdhklnnnnnkvv*welfqh*ldlwqfiilqvl
lfpnf*vqviiiimevlf*iiimvlqihqyhqiqld*qihgqkvlnli*kfiyqlqmkll
eig*fgnkinylmigkivtqfqlktlhliqhliykimahysltl*lqdvli*inqnhnyi
kfih*lfiyqnqnqrvkiy*kknqkmnqksnmiqln*fhig---

---lh*ivfawvlyfyiy*imklvi*f*qvvdldf*lnfgn*vkq*qlklhg*qvyhyqn
vlnslirmntcqklnnmmiwq*siyhgyyshwllvlpfthytitsirvgilg*fqv*yvp
ftllnsl**hhnyssiin*nqfhiylgeyscivl*ipl*miyllsslkchyfiv*vvfvm
ilsl*fisikdgfiqxikrdhimvlkklkkynnkikkklkkrlrrerrknkkkkkkkkkk
rknqh

Frame B:
yfiakrkvns*ytqk*ixrrsccskwpkttsstttttrwyngnyfnin*iygnllyckfc
sfqifryr*****wrccfk***wyykyintikfs*iskfmarry*i*yeslsinfk*ncw
rlvslgtr*iil*ler**hnsn*khyi*yntlftk*wliirshynfktclfkstkitit*
sssinclftktktkg*kfirrkikr*trsri*sn*infile---

---yiklclhgyyififir**n*lydfsk*wiwifs*ileir*sndn*nymddkftitkt
y*ih**g*ihvkn*ti**ygnevfimvtipigywyfhlliilsra*elvflgsfkfstyr
lhf*ihyddttiihql*ikisftftlesihvscfeylyr*sicfhh*naitssfklss**
yylyslslskmdlssx*keitlwf*rs*rstttr*krn*rkg*gerggktrrrrrrkrkr
grin

Frame C:
ilspnek*thnthkne*XGGAVAANGQRPQAQQQQQQGGIMGIISTLIRFMAIYYIASFA
LSKFLGTGNNNNNGGVVLNNNNGTTNTSIPSNSVRLANSWPEGIEFNMKVYLSTSNETVG
DWLVWEQDKLSYDWKDSNTIPTKNITFDTTPYLQNNGSLFAHIITSRRAYLNQPKSQLHK
VHPLIVYLPKPKPKGKNLLEEKSKDEPEVEYDPTELISYWK---

---TLNCVCMGIIFLYLLDNETSYMILASSGFGFLVEFWKLGKAMTIKITWMTSLPLPKR
IEFINKDEYMSKTKQYDDMAMKYLSWLLFPLVIGTSIYSLYYHEHKSWYSWVVSSLVRTV
YTFEFIMMTPQLFINYKLKSVSHLPWRVFMYRALNTFIDDLFAFIIKMPLLHRLSCLRDD
IIFIVYLYQRWIYPVXKKRSHYGSEEAEEVQQQDKKEIKEKVEEREEEKQEEEEEEKEKE
EEST
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ896 (VFJ896Q) /CSM/VF/VFJ8-D/VFJ896Q.Seq.d/                       1304   0.0
VHK681 (VHK681Q) /CSM/VH/VHK6-D/VHK681Q.Seq.d/                       1243   0.0
VFD742 (VFD742Q) /CSM/VF/VFD7-B/VFD742Q.Seq.d/                       1243   0.0
SFA873 (SFA873Q) /CSM/SF/SFA8-D/SFA873Q.Seq.d/                       1237   0.0
CFK158 (CFK158Q) /CSM/CF/CFK1-C/CFK158Q.Seq.d/                       1235   0.0
CFA684 (CFA684Q) /CSM/CF/CFA6-D/CFA684Q.Seq.d/                       1213   0.0
CHL516 (CHL516Q) /CSM/CH/CHL5-A/CHL516Q.Seq.d/                       1189   0.0
VFF189 (VFF189Q) /CSM/VF/VFF1-D/VFF189Q.Seq.d/                       1168   0.0
VFK187 (VFK187Q) /CSM/VF/VFK1-D/VFK187Q.Seq.d/                       1154   0.0
AFE481 (AFE481Q) /CSM/AF/AFE4-D/AFE481Q.Seq.d/                       1047   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443377) Dictyostelium discoideum cDNA clone:ddv52a22, 3' ...  1243   0.0    1
(BJ433166) Dictyostelium discoideum cDNA clone:ddv20p24, 3' ...  1243   0.0    1
(BJ430679) Dictyostelium discoideum cDNA clone:ddv8d11, 3' e...  1243   0.0    1
(BJ398861) Dictyostelium discoideum cDNA clone:dds2b20, 3' e...  1237   0.0    1
(BJ376181) Dictyostelium discoideum cDNA clone:ddc21c15, 3' ...  1235   0.0    1
(BJ373327) Dictyostelium discoideum cDNA clone:ddc2g22, 3' e...  1213   0.0    1
(BJ382578) Dictyostelium discoideum cDNA clone:ddc45o03, 3' ...  1189   0.0    1
(BJ433448) Dictyostelium discoideum cDNA clone:ddv21m21, 3' ...  1154   0.0    1
(BJ428384) Dictyostelium discoideum cDNA clone:ddv11a23, 3' ...  1144   0.0    3
(BJ342163) Dictyostelium discoideum cDNA clone:dda9b22, 3' e...  1047   0.0    1
dna update 2009. 2. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK317745_1(AK317745|pid:none) Arabidopsis thaliana AT5G23575 mRN...   265   3e-69
AY064127_1(AY064127|pid:none) Arabidopsis thaliana AT5g08500/MAH...   265   3e-69
AB006697_6(AB006697|pid:none) Arabidopsis thaliana genomic DNA, ...   265   4e-69
EU968184_1(EU968184|pid:none) Zea mays clone 316348 unknown mRNA.     262   3e-68
AP008210_891(AP008210|pid:none) Oryza sativa (japonica cultivar-...   259   2e-67
BX548156_9(BX548156|pid:none) Oryza sativa genomic DNA, chromoso...   259   2e-67
BC166290_1(BC166290|pid:none) Xenopus tropicalis hypothetical pr...   233   1e-59
AB045223_1(AB045223|pid:none) Homo sapiens CRR9 mRNA for cisplat...   233   1e-59
(Q5ZKJ0) RecName: Full=Cleft lip and palate transmembrane protei...   233   1e-59
(Q5R7B1) RecName: Full=Cleft lip and palate transmembrane protei...   233   2e-59
protein update 2009. 6.22
PSORT 

 psg: 0.94  gvh: 0.46  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.13
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VFJ896 is cyt
5' end seq. ID VFJ896F
5' end seq. 
>VFJ896F.Seq
ATATTTTATCGCCAAACGAAAAGTGAACTCATAATACACACAAAAATGAATAATNAGGCG
GAGCTGTTGCAGCAAATGGCCAAAGACCACAAGCTCAACAACAACAACAACAAGGTGGTA
TAATGGGAATTATTTCAACATTAATTAGATTTATGGCAATTTATTATATTGCAAGTTTTG
CTCTTTCCAAATTTTTAGGTACAGGTAATAATAATAATAATGGAGGTGTTGTTTTAAATA
ATAATAATGGTACTACAAATACATCAATACCATCAAATTCAGTTAGATTAGCAAATTCAT
GGCCAGAAGGTATTGAATTTAATATGAAAGTTTATCTATCAACTTCAAATGAAACTGTTG
GAGATTGGTTAGTTTGGGAACAAGATAAATTATCTTATGATTGGAAAGATAGTAACACAA
TTCCAACTAAAAACATTACATTTGATACAACACCTTATTTACAAAATAATGGCTCATTAT
TCGCTCACATTATAACTTCAAGACGTGCTTATTTAAATCAACCAAAATCACAATTACATA
AAGTTCATCCATTAATTGTTTATTTACCAAAACCAAAACCAAAGGGTAAAAATTTATTAG
AAGAAAAATCAAAAGATGAACCAGAAGTCGAATATGATCCAACTGAATTAATTTCATATT
GGAAANNNNNNNNNN
Length of 5' end seq. 675
3' end seq. ID VFJ896Z
3' end seq. 
>VFJ896Z.Seq
NNNNNNNNNNTTACATTAAATTGTGTTTGCATGGGTATTATATTTTTATATTTATTAGAT
AATGAAACTAGTTATATGATTTTAGCAAGTAGTGGATTTGGATTTTTAGTTGAATTTTGG
AAATTAGGTAAAGCAATGACAATTAAAATTACATGGATGACAAGTTTACCATTACCAAAA
CGTATTGAATTCATTAATAAGGATGAATACATGTCAAAAACTAAACAATATGATGATATG
GCAATGAAGTATTTATCATGGTTACTATTCCCATTGGTTATTGGTACTTCCATTTACTCA
TTATACTATCACGAGCATAAGAGTTGGTATTCTTGGGTAGTTTCAAGTTTAGTACGTACC
GTTTACACTTTTGAATTCATTATGATGACACCACAATTATTCATCAATTATAAATTAAAA
TCAGTTTCACATTTACCTTGGAGAGTATTCATGTATCGTGCTTTGAATACCTTTATAGAT
GATCTATTTGCTTTCATCATTAAAATGCCATTACTTCATCGTTTAAGTTGTCTTCGTGAT
GATATTATCTTTATAGTTTATCTCTATCAAAGATGGATTTATCCAGTTNATAAAAAGAGA
TCACATTATGGTTCTGAAGAAGCTGAAGAAGTACAACAACAAGATAAAAAAGAAATTAAA
GAAAAGGTTGAGGAGAGAGAGGAGGAAAAACAAGAAGAAGAAGAAGAAGAAAAAGAAAAA
GAGGAAGAATCAACAT
Length of 3' end seq. 736
Connected seq. ID VFJ896P
Connected seq. 
>VFJ896P.Seq
ATATTTTATCGCCAAACGAAAAGTGAACTCATAATACACACAAAAATGAATAATNAGGCG
GAGCTGTTGCAGCAAATGGCCAAAGACCACAAGCTCAACAACAACAACAACAAGGTGGTA
TAATGGGAATTATTTCAACATTAATTAGATTTATGGCAATTTATTATATTGCAAGTTTTG
CTCTTTCCAAATTTTTAGGTACAGGTAATAATAATAATAATGGAGGTGTTGTTTTAAATA
ATAATAATGGTACTACAAATACATCAATACCATCAAATTCAGTTAGATTAGCAAATTCAT
GGCCAGAAGGTATTGAATTTAATATGAAAGTTTATCTATCAACTTCAAATGAAACTGTTG
GAGATTGGTTAGTTTGGGAACAAGATAAATTATCTTATGATTGGAAAGATAGTAACACAA
TTCCAACTAAAAACATTACATTTGATACAACACCTTATTTACAAAATAATGGCTCATTAT
TCGCTCACATTATAACTTCAAGACGTGCTTATTTAAATCAACCAAAATCACAATTACATA
AAGTTCATCCATTAATTGTTTATTTACCAAAACCAAAACCAAAGGGTAAAAATTTATTAG
AAGAAAAATCAAAAGATGAACCAGAAGTCGAATATGATCCAACTGAATTAATTTCATATT
GGAAA----------TTACATTAAATTGTGTTTGCATGGGTATTATATTTTTATATTTAT
TAGATAATGAAACTAGTTATATGATTTTAGCAAGTAGTGGATTTGGATTTTTAGTTGAAT
TTTGGAAATTAGGTAAAGCAATGACAATTAAAATTACATGGATGACAAGTTTACCATTAC
CAAAACGTATTGAATTCATTAATAAGGATGAATACATGTCAAAAACTAAACAATATGATG
ATATGGCAATGAAGTATTTATCATGGTTACTATTCCCATTGGTTATTGGTACTTCCATTT
ACTCATTATACTATCACGAGCATAAGAGTTGGTATTCTTGGGTAGTTTCAAGTTTAGTAC
GTACCGTTTACACTTTTGAATTCATTATGATGACACCACAATTATTCATCAATTATAAAT
TAAAATCAGTTTCACATTTACCTTGGAGAGTATTCATGTATCGTGCTTTGAATACCTTTA
TAGATGATCTATTTGCTTTCATCATTAAAATGCCATTACTTCATCGTTTAAGTTGTCTTC
GTGATGATATTATCTTTATAGTTTATCTCTATCAAAGATGGATTTATCCAGTTNATAAAA
AGAGATCACATTATGGTTCTGAAGAAGCTGAAGAAGTACAACAACAAGATAAAAAAGAAA
TTAAAGAAAAGGTTGAGGAGAGAGAGGAGGAAAAACAAGAAGAAGAAGAAGAAGAAAAAG
AAAAAGAGGAAGAATCAACAT
Length of connected seq. 1391
Full length Seq ID -
Full length Seq. -
Length of full length seq. -