VFJ869
Library VF
(Link to library)
Clone ID VFJ869
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15102-1
Original site URL
Representative seq. ID VFJ869P
(Link to Original site)
Representative DNA sequence
>VFJ869 (VFJ869Q) /CSM/VF/VFJ8-C/VFJ869Q.Seq.d/
ATTTTTAAAGTATCGAATAAACTTATATTTATAAAAATGACAGAAATTCTTAGATATTGT
CAAGGTATCATGCAACGTGGTATCAAAGAATCTATTAAAACATTATATTACACAGGTGAA
CTCAAATTTGGTACATTAGTTGGTGTTGATAAAGTTGNTNNTAGATATTATGAAAATAGA
CAAGAAATCTATGGAAGACATAGATGGGTAGAATATGGAGATTACAAATCAAATGATCCA
ACCACCATCCCACCAGAATATCACAGTTGGATTCACCACGTTTCTGATAAACTCCCAAGT
GAAATGCTTCCATTTTCACCAACATACAAAAGACCACATATTGCCAATCCAACTGGTACT
GATGGTGCCTATACACCACCAAATTTCTTATTCAATATTGAAAAATCAAAAGAAGAACTT
CAAAAAGAAGAAAAGAATGATAACAAACAATAATTTAGTATGAATAATAATAATAAAATA
ATAATAAATAATATAATATATAAAAAAAAAAAAAAAANTNGGGNTANTAAAAAAAAAAXX
XXXXXXXXATTTTTAAAGTATCGAATAANCTTATATTTATAAAAANGACAGAAATTCTTA
GATATTGTCAAGGTATCATGCAACGTGGTATCAAAGAATCTATTAAAACATTATATTACA
CAGGTGAACTCAAATTTGGTACATTAGTTGGTGTTGATAAAGTTGGTAATAGATATTATG
AAAATAGGCAAGAAATCTATGGAAGACATAGATGGGTAGAATATGNAGATTNCANATCAA
ATGATCCANCCACCATCCCACCAGAATATCACAGTTGGATTCACCACGTTTCNTGATNAA
CTCCCAAGTGAAATGCNTCCATTTTCNCCAACATACGGNAGACCACNTNNNGCCAATCCA
NCTGGTNCTGATGGTGCCTATACACCACCAAATTTCTTATTCAATATGAAAAATCAAAAG
AAGANCTTCAAAAAGAAGANAAGAANATAACAAACAATA
sequence update 2001.11.22
Translated Amino Acid sequence
ifkvsnklifikmteilrycqgimqrgikesiktlyytgelkfgtlvgvdkvxxryyenr
qeiygrhrwveygdyksndpttippeyhswihhvsdklpsemlpfsptykrphianptgt
dgaytppnflfniekskeelqkeekndnkq*FSMNNNNKIIINNIIYKKKKKXXXXKKK-
--

---IFKVSNXLIFIKXTEILRYCQGIMQRGIKESIKTLYYTGELKFGTLVGVDKVGNRYY
ENRQEIYGRHRWVEYXDXXSNDPXTIPPEYHSWIHHVS*xtpk*nasifxnirxttxxqs
xwx*wclyttkfliqyekskexlqkexkxitnn


Translated Amino Acid sequence (All Frames)
Frame A:
ifkvsnklifikmteilrycqgimqrgikesiktlyytgelkfgtlvgvdkvxxryyenr
qeiygrhrwveygdyksndpttippeyhswihhvsdklpsemlpfsptykrphianptgt
dgaytppnflfniekskeelqkeekndnkq*FSMNNNNKIIINNIIYKKKKKXXXXKKK-
--

---IFKVSNXLIFIKXTEILRYCQGIMQRGIKESIKTLYYTGELKFGTLVGVDKVGNRYY
ENRQEIYGRHRWVEYXDXXSNDPXTIPPEYHSWIHHVS*xtpk*nasifxnirxttxxqs
xwx*wclyttkfliqyekskexlqkexkxitnn

Frame B:
flkyrinlyl*k*qkfldivkvscnvvsknllkhyitqvnsnlvh*lvliklxxdimkid
kksmedidg*nmeitnqmiqppshqnitvgfttflinsqvkcfhfhqhtkdhilpiqlvl
mvpihhqisysilknqkknfkkkkrmitnnnlv*iiiik***ii*yikkkkkxgxxkkk-
--

---flkyrixlyl*kxqkfldivkvscnvvsknllkhyitqvnsnlvh*lvliklvidim
kigkksmedidg*nmxixxqmixppshqnitvgfttfxdxlpsemxpfsptygrpxxanp
xgxdgaytppnflfnmknqkkxfkkkxrx*qti

Frame C:
f*sie*tyiykndrns*ilsryhatwyqriy*niilhr*tqiwyiswc**sxx*il*k*t
rnlwkt*mgriwrlqik*snhhptrisqldsprf**tpk*nasiftniqkttycqsnwy*
wclyttkfliqy*kikrrtskrrke**qtii*ye****nnnk*yni*kkkkxxgx*kk--
-

---f*sie*xyiykxdrns*ilsryhatwyqriy*niilhr*tqiwyiswc**sw**il*
k*arnlwkt*mgrixrxxik*sxhhptrisqldsprfxxnsqvkcxhfxqhtxdhxxpix
lvlmvpihhqisysi*kikrrxskrrxexnkq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFJ869 (VFJ869Q) /CSM/VF/VFJ8-C/VFJ869Q.Seq.d/ 775 0.0
SSK426 (SSK426Q) /CSM/SS/SSK4-B/SSK426Q.Seq.d/ 735 0.0
FC-AC10 (FC-AC10Q) /CSM/FC/FC-AC/FC-AC10Q.Seq.d/ 694 0.0
SSM336 (SSM336Q) /CSM/SS/SSM3-B/SSM336Q.Seq.d/ 36 1.00
SLH634 (SLH634Q) /CSM/SL/SLH6-B/SLH634Q.Seq.d/ 36 1.00
SLC223 (SLC223Q) /CSM/SL/SLC2-A/SLC223Q.Seq.d/ 36 1.00
CHP414 (CHP414Q) /CSM/CH/CHP4-A/CHP414Q.Seq.d/ 36 1.00
CHC330 (CHC330Q) /CSM/CH/CHC3-B/CHC330Q.Seq.d/ 36 1.00
CFJ294 (CFJ294Q) /CSM/CF/CFJ2-D/CFJ294Q.Seq.d/ 36 1.00
CFI662 (CFI662Q) /CSM/CF/CFI6-C/CFI662Q.Seq.d/ 36 1.00

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ414854) Dictyostelium discoideum cDNA clone:ddv20j18, 5' ... 773 0.0 1
(C23645) Dictyostelium discoideum gamete cDNA, clone FC-AC10. 694 0.0 1
(BJ433051) Dictyostelium discoideum cDNA clone:ddv20j18, 3' ... 690 0.0 1
(AU074340) Dictyostelium discoideum slug cDNA, clone SSK426. 452 e-122 1
(EL367947) CCES4102.b1_K18.ab1 CCE(LMS) endive Cichorium end... 50 1e-05 2
(EL366777) CCES2888.b1_O02.ab1 CCE(LMS) endive Cichorium end... 50 1e-05 2
(EX684236) JS7BB82JG Salt and heat stressed Fragaria vesca (... 46 4e-05 2
(EX672073) JS3C606JG Heat stressed Fragaria vesca (strain Ha... 46 4e-05 2
(EX688370) JS7CY41JG Salt and heat stressed Fragaria vesca (... 46 4e-05 2
(EX686293) JS7C473JG Salt and heat stressed Fragaria vesca (... 46 4e-05 2
dna update 2009. 1.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017345_399(AE017345|pid:none) Cryptococcus neoformans var. neo... 87 1e-15
BT075977_1(BT075977|pid:none) Caligus rogercresseyi clone crog-e... 82 2e-14
AY814630_1(AY814630|pid:none) Schistosoma japonicum SJCHGC08585 ... 80 8e-14
BT077831_1(BT077831|pid:none) Lepeophtheirus salmonis clone lsal... 78 4e-13
AY118779_1(AY118779|pid:none) Drosophila melanogaster GH12382 fu... 77 1e-12
AE014134_446(AE014134|pid:none) Drosophila melanogaster chromoso... 77 1e-12
BC084520_1(BC084520|pid:none) Xenopus tropicalis hypothetical LO... 75 3e-12
EF084009_1(EF084009|pid:none) Picea sitchensis clone WS0274_K03 ... 75 3e-12
DQ215400_1(DQ215400|pid:none) Taeniopygia guttata clone 0061P000... 75 4e-12
DQ215401_1(DQ215401|pid:none) Taeniopygia guttata clone 0058P005... 75 4e-12
protein update 2009. 6.22
PSORT

psg: 0.81 gvh: 0.42 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.10
nuc: 0.08 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for VFJ869 is cyt

5' end seq. ID VFJ869F
5' end seq.
>VFJ869F.Seq
ATTTTTAAAGTATCGAATAAACTTATATTTATAAAAATGACAGAAATTCTTAGATATTGT
CAAGGTATCATGCAACGTGGTATCAAAGAATCTATTAAAACATTATATTACACAGGTGAA
CTCAAATTTGGTACATTAGTTGGTGTTGATAAAGTTGNTNNTAGATATTATGAAAATAGA
CAAGAAATCTATGGAAGACATAGATGGGTAGAATATGGAGATTACAAATCAAATGATCCA
ACCACCATCCCACCAGAATATCACAGTTGGATTCACCACGTTTCTGATAAACTCCCAAGT
GAAATGCTTCCATTTTCACCAACATACAAAAGACCACATATTGCCAATCCAACTGGTACT
GATGGTGCCTATACACCACCAAATTTCTTATTCAATATTGAAAAATCAAAAGAAGAACTT
CAAAAAGAAGAAAAGAATGATAACAAACAATAATTTAGTATGAATAATAATAATAAAATA
ATAATAAATAATATAATATATAAAAAAAAAAAAAAAANTNGGGNTANTAAAAAAAAAANN
NNNNNNNN
Length of 5' end seq. 548
3' end seq. ID VFJ869Z
3' end seq.
>VFJ869Z.Seq
NNNNNNNNNNATTTTTAAAGTATCGAATAANCTTATATTTATAAAAANGACAGAAATTCT
TAGATATTGTCAAGGTATCATGCAACGTGGTATCAAAGAATCTATTAAAACATTATATTA
CACAGGTGAACTCAAATTTGGTACATTAGTTGGTGTTGATAAAGTTGGTAATAGATATTA
TGAAAATAGGCAAGAAATCTATGGAAGACATAGATGGGTAGAATATGNAGATTNCANATC
AAATGATCCANCCACCATCCCACCAGAATATCACAGTTGGATTCACCACGTTTCNTGATN
AACTCCCAAGTGAAATGCNTCCATTTTCNCCAACATACGGNAGACCACNTNNNGCCAATC
CANCTGGTNCTGATGGTGCCTATACACCACCAAATTTCTTATTCAATATGAAAAATCAAA
AGAAGANCTTCAAAAAGAAGANAAGAANATAACAAACAATA
Length of 3' end seq. 461
Connected seq. ID VFJ869P
Connected seq.
>VFJ869P.Seq
ATTTTTAAAGTATCGAATAAACTTATATTTATAAAAATGACAGAAATTCTTAGATATTGT
CAAGGTATCATGCAACGTGGTATCAAAGAATCTATTAAAACATTATATTACACAGGTGAA
CTCAAATTTGGTACATTAGTTGGTGTTGATAAAGTTGNTNNTAGATATTATGAAAATAGA
CAAGAAATCTATGGAAGACATAGATGGGTAGAATATGGAGATTACAAATCAAATGATCCA
ACCACCATCCCACCAGAATATCACAGTTGGATTCACCACGTTTCTGATAAACTCCCAAGT
GAAATGCTTCCATTTTCACCAACATACAAAAGACCACATATTGCCAATCCAACTGGTACT
GATGGTGCCTATACACCACCAAATTTCTTATTCAATATTGAAAAATCAAAAGAAGAACTT
CAAAAAGAAGAAAAGAATGATAACAAACAATAATTTAGTATGAATAATAATAATAAAATA
ATAATAAATAATATAATATATAAAAAAAAAAAAAAAANTNGGGNTANTAAAAAAAAAA--
--------ATTTTTAAAGTATCGAATAANCTTATATTTATAAAAANGACAGAAATTCTTA
GATATTGTCAAGGTATCATGCAACGTGGTATCAAAGAATCTATTAAAACATTATATTACA
CAGGTGAACTCAAATTTGGTACATTAGTTGGTGTTGATAAAGTTGGTAATAGATATTATG
AAAATAGGCAAGAAATCTATGGAAGACATAGATGGGTAGAATATGNAGATTNCANATCAA
ATGATCCANCCACCATCCCACCAGAATATCACAGTTGGATTCACCACGTTTCNTGATNAA
CTCCCAAGTGAAATGCNTCCATTTTCNCCAACATACGGNAGACCACNTNNNGCCAATCCA
NCTGGTNCTGATGGTGCCTATACACCACCAAATTTCTTATTCAATATGAAAAATCAAAAG
AAGANCTTCAAAAAGAAGANAAGAANATAACAAACAATA
Length of connected seq. 989
Full length Seq ID -
Full length Seq. -
Length of full length seq. -