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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM772
Library AF
(Link to library)
Clone ID AFM772
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM772P
(Link to Original site)
Representative DNA sequence 
>AFM772 (AFM772Q) /CSM/AF/AFM7-C/AFM772Q.Seq.d/
ATTTAATAATACACATTCTTTCACACCAATCATTTTTTATATAAATTTTTATAAAAACGT
TTTTTAATTTAATTGTTGCGTTTAAACAATGAGGTTAGGATCCATATCATCTCTATCTTG
TGATCAACTGTGTAAATATTTACATTCATCACTTGGTGATGAATATTCAAACATCATTAA
TAGTTTTAAAATAAATCAAGTCACTGGTGATGATTTTGTTTTATTTGAACAAAAAGATTA
TGAAACTTTATCAGTACCTTGGAAATTTCAAAAAAAACTTAAAGAAATACAAGGTTCTGG
TGTTGTAGATAATCCAGGCTCAACTCCAAACCCAAGCCCAAACCCAAGTCCAAACCCAGT
ACCTGGCAATACTTCAAATGCACCAACATCAACAGGTAGAGAATCACTTGAGACCCAAAG
AGATATCATACAAATGAAAAGTAAAATTGATCTTCTCAGTAATTCATTGTTACAACTAGT
TGAGCAAATGAAAGTTACCAAACCACCTACAAATAACTTTTCAAATTTATCACCAGCAAC
ACAAAATAAAATATTGAATCCATCACCTCAATCAAAGAGAATCCCAATCATTGATCCAAX
XXXXXXXXXGGTTAATGTCAATCCACCTGAAAGCATTATACTTCCCCAAAAAGTTTATGA
TTAAAACACCTCTTAGTGAACCTATAGATGGTACTATTGAATTGATGTATGGTGGTAGAA
ATATGTTTACTGGCAGTGTTACACAAGGTGATGCTGATCTTCCTCTAAACCTCTTGGATG
GTACATTTGAGGTTATCATTAAACCCAATAAGAGTAATTTATTACCTTTAAAGTTTAAAA
TGATTATACATGACTCTGTAAGAACCACTTCAAGCCATCAAAATGTCGGTAGACCTAAAA
AGCCTAAAGAAATGGATTTCGTTTTAGCTTGGGGGGAATCACCACTGGATTTGGATTCTC
ATATGTGGTGTATTCATCCTAATGGTTCTATTAGTCATGTTTATTTCGGGGGTAGGAGTG
TAGATAAAATGTCCTTGGAAGCTGATACTCAAAATGGTTTTGGTCCCGAAACCATAAGTA
TTATACGTTTAGATGGTTGTAAATATGTTTATGCAGTTCATAATTTCTCAACTGAAGGAG
AAATAGCTCAATCAGGTGCCAAGCTTACAATTGCCCATGAAACCTCAACATTATTTGAAA
GATGTATCCCAAACACTCGACAAACTGGTGCAAGATTTTGGGTAGTATGTACTATTGATG
GAACATCTGGAGATATTGACTTCAAAGATCATTTTGAATTCCACAATTCACAAACAGATA
TTCCATTAAAATATAAATAAGTATAAAAAATTT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
fnnthsftpiifyinfyknvf*fnccv*TMRLGSISSLSCDQLCKYLHSSLGDEYSNIIN
SFKINQVTGDDFVLFEQKDYETLSVPWKFQKKLKEIQGSGVVDNPGSTPNPSPNPSPNPV
PGNTSNAPTSTGRESLETQRDIIQMKSKIDLLSNSLLQLVEQMKVTKPPTNNFSNLSPAT
QNKILNPSPQSKRIPIIDP---

---LMSIHLKALYFPKKFMIKTPLSEPIDGTIELMYGGRNMFTGSVTQGDADLPLNLLDG
TFEVIIKPNKSNLLPLKFKMIIHDSVRTTSSHQNVGRPKKPKEMDFVLAWGESPLDLDSH
MWCIHPNGSISHVYFGGRSVDKMSLEADTQNGFGPETISIIRLDGCKYVYAVHNFSTEGE
IAQSGAKLTIAHETSTLFERCIPNTRQTGARFWVVCTIDGTSGDIDFKDHFEFHNSQTDI
PLKYK*v*ki
Translated Amino Acid sequence (All Frames) 
Frame A:
i**ytffhtnhflykfl*krfli*llrlnnevrihiisil*stv*iftfitw**ifkhh*
*f*nksshw**fcfi*tkrl*nfistleiskkt*rntrfwccr*srlnskpkpkpkskps
twqyfkctninr*rit*dpkryhtnek*n*ssq*fivtts*anesyqttyk*lfkfitsn
tk*niesitsikenpnh*s---

---g*cqst*khytspksl*lkhllvnl*mvlln*cmvveicllavlhkvmlifl*tswm
vhlrlslnpirviyyl*slk*lymtl*eplqaikmsvdlkslkkwisf*lggnhhwiwil
icgvfilmvllvmfisgvgv*ikcpwklilkmvlvpkp*vlyv*mvvnmfmqfiisqlke
k*lnqvpslqlpmkpqhylkdvsqtldklvqdfg*yvllmehleiltskiilnstihkqi
fh*ninkykkf

Frame B:
fnnthsftpiifyinfyknvf*fnccv*TMRLGSISSLSCDQLCKYLHSSLGDEYSNIIN
SFKINQVTGDDFVLFEQKDYETLSVPWKFQKKLKEIQGSGVVDNPGSTPNPSPNPSPNPV
PGNTSNAPTSTGRESLETQRDIIQMKSKIDLLSNSLLQLVEQMKVTKPPTNNFSNLSPAT
QNKILNPSPQSKRIPIIDP---

---vnvnppesiilpqkvyd*nts**tyrwyy*idvww*kyvywqcytr*c*ssskplgw
yi*gyh*tq*e*fitfkv*ndyt*lcknhfkpskcr*t*ka*rngfrfslggittgfgfs
yvvyss*wfy*sclfrg*ecr*nvlgs*yskwfwsrnhkyytfrwl*iclcss*fln*rr
nssircqayncp*nlnii*kmypkhstnwckilgsmyy*wniwry*lqrsf*ipqftnry
siki*isikn

Frame C:
liihilshqsffi*ifiktffnlivafkq*g*dpyhlylvincvniyihhlvmniqtsli
vlk*ikslvmilfylnkkimklyqylgnfkknlkkykvlvl*iiqaqlqtqaqtqvqtqy
lailqmhqhqqvenhlrpkeisyk*kvklifsvihcyn*lsk*klpnhlqitfqiyhqqh
kiky*ihhlnqresqsliq---

---LMSIHLKALYFPKKFMIKTPLSEPIDGTIELMYGGRNMFTGSVTQGDADLPLNLLDG
TFEVIIKPNKSNLLPLKFKMIIHDSVRTTSSHQNVGRPKKPKEMDFVLAWGESPLDLDSH
MWCIHPNGSISHVYFGGRSVDKMSLEADTQNGFGPETISIIRLDGCKYVYAVHNFSTEGE
IAQSGAKLTIAHETSTLFERCIPNTRQTGARFWVVCTIDGTSGDIDFKDHFEFHNSQTDI
PLKYK*v*ki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM772 (AFM772Q) /CSM/AF/AFM7-C/AFM772Q.Seq.d/                       2436   0.0
AFK644 (AFK644Q) /CSM/AF/AFK6-B/AFK644Q.Seq.d/                       1475   0.0
SFF683 (SFF683Q) /CSM/SF/SFF6-D/SFF683Q.Seq.d/                       1453   0.0
AFG278 (AFG278Q) /CSM/AF/AFG2-D/AFG278Q.Seq.d/                       1453   0.0
AFK810 (AFK810Q) /CSM/AF/AFK8-A/AFK810Q.Seq.d/                       1449   0.0
SFE535 (SFE535Q) /CSM/SF/SFE5-B/SFE535Q.Seq.d/                       1443   0.0
CFH243 (CFH243Q) /CSM/CF/CFH2-B/CFH243Q.Seq.d/                       1427   0.0
AFF489 (AFF489Q) /CSM/AF/AFF4-D/AFF489Q.Seq.d/                       1427   0.0
AFM455 (AFM455Q) /CSM/AF/AFM4-C/AFM455Q.Seq.d/                       1423   0.0
AFE181 (AFE181Q) /CSM/AF/AFE1-D/AFE181Q.Seq.d/                       1415   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347310) Dictyostelium discoideum cDNA clone:dda26p17, 3' ...  1471   0.0    1
(BJ343198) Dictyostelium discoideum cDNA clone:dda22g12, 3' ...  1471   0.0    1
(BJ398529) Dictyostelium discoideum cDNA clone:dds12e22, 3' ...  1405   0.0    2
(BJ342157) Dictyostelium discoideum cDNA clone:dda9a21, 3' e...  1405   0.0    2
(BJ397938) Dictyostelium discoideum cDNA clone:dds10e09, 3' ...  1403   0.0    3
(BJ342415) Dictyostelium discoideum cDNA clone:dda13k20, 3' ...  1400   0.0    2
(BJ343592) Dictyostelium discoideum cDNA clone:dda16f17, 3' ...  1380   0.0    1
(BJ340129) Dictyostelium discoideum cDNA clone:dda11b24, 3' ...  1378   0.0    2
(BJ342978) Dictyostelium discoideum cDNA clone:dda15m16, 3' ...  1374   0.0    1
(BJ346629) Dictyostelium discoideum cDNA clone:dda24d14, 3' ...  1366   0.0    1
dna update 2009. 4.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000478_3794(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    70   2e-10
CP000112_1873(CP000112|pid:none) Desulfovibrio desulfuricans G20...    67   1e-09
CP000880_2513(CP000880|pid:none) Salmonella enterica subsp. ariz...    67   1e-09
AE014075_780(AE014075|pid:none) Escherichia coli CFT073, complet...    62   3e-08
CU928162_679(CU928162|pid:none) Escherichia coli ED1a chromosome...    62   5e-08
CP000247_733(CP000247|pid:none) Escherichia coli 536, complete g...    61   1e-07
CP000243_708(CP000243|pid:none) Escherichia coli UTI89, complete...    60   2e-07
AE001437_1067(AE001437|pid:none) Clostridium acetobutylicum ATCC...    57   1e-06
FM954973_832(FM954973|pid:none) Vibrio splendidus LGP32 chromoso...    56   2e-06
AE001437_1068(AE001437|pid:none) Clostridium acetobutylicum ATCC...    55   6e-06
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM772 is

5' end seq. ID AFM772F
5' end seq. 
>AFM772F.Seq
ATTTAATAATACACATTCTTTCACACCAATCATTTTTTATATAAATTTTTATAAAAACGT
TTTTTAATTTAATTGTTGCGTTTAAACAATGAGGTTAGGATCCATATCATCTCTATCTTG
TGATCAACTGTGTAAATATTTACATTCATCACTTGGTGATGAATATTCAAACATCATTAA
TAGTTTTAAAATAAATCAAGTCACTGGTGATGATTTTGTTTTATTTGAACAAAAAGATTA
TGAAACTTTATCAGTACCTTGGAAATTTCAAAAAAAACTTAAAGAAATACAAGGTTCTGG
TGTTGTAGATAATCCAGGCTCAACTCCAAACCCAAGCCCAAACCCAAGTCCAAACCCAGT
ACCTGGCAATACTTCAAATGCACCAACATCAACAGGTAGAGAATCACTTGAGACCCAAAG
AGATATCATACAAATGAAAAGTAAAATTGATCTTCTCAGTAATTCATTGTTACAACTAGT
TGAGCAAATGAAAGTTACCAAACCACCTACAAATAACTTTTCAAATTTATCACCAGCAAC
ACAAAATAAAATATTGAATCCATCACCTCAATCAAAGAGAATCCCAATCATTGATCCAAX
XXXXXXXXX
Length of 5' end seq. 609
3' end seq. ID AFM772Z
3' end seq. 
>AFM772Z.Seq
XXXXXXXXXXGGTTAATGTCAATCCACCTGAAAGCATTATACTTCCCCAAAAAGTTTATG
ATTAAAACACCTCTTAGTGAACCTATAGATGGTACTATTGAATTGATGTATGGTGGTAGA
AATATGTTTACTGGCAGTGTTACACAAGGTGATGCTGATCTTCCTCTAAACCTCTTGGAT
GGTACATTTGAGGTTATCATTAAACCCAATAAGAGTAATTTATTACCTTTAAAGTTTAAA
ATGATTATACATGACTCTGTAAGAACCACTTCAAGCCATCAAAATGTCGGTAGACCTAAA
AAGCCTAAAGAAATGGATTTCGTTTTAGCTTGGGGGGAATCACCACTGGATTTGGATTCT
CATATGTGGTGTATTCATCCTAATGGTTCTATTAGTCATGTTTATTTCGGGGGTAGGAGT
GTAGATAAAATGTCCTTGGAAGCTGATACTCAAAATGGTTTTGGTCCCGAAACCATAAGT
ATTATACGTTTAGATGGTTGTAAATATGTTTATGCAGTTCATAATTTCTCAACTGAAGGA
GAAATAGCTCAATCAGGTGCCAAGCTTACAATTGCCCATGAAACCTCAACATTATTTGAA
AGATGTATCCCAAACACTCGACAAACTGGTGCAAGATTTTGGGTAGTATGTACTATTGAT
GGAACATCTGGAGATATTGACTTCAAAGATCATTTTGAATTCCACAATTCACAAACAGAT
ATTCCATTAAAATATAAATAAGTATAAAAAATTT
Length of 3' end seq. 754
Connected seq. ID AFM772P
Connected seq. 
>AFM772P.Seq
ATTTAATAATACACATTCTTTCACACCAATCATTTTTTATATAAATTTTTATAAAAACGT
TTTTTAATTTAATTGTTGCGTTTAAACAATGAGGTTAGGATCCATATCATCTCTATCTTG
TGATCAACTGTGTAAATATTTACATTCATCACTTGGTGATGAATATTCAAACATCATTAA
TAGTTTTAAAATAAATCAAGTCACTGGTGATGATTTTGTTTTATTTGAACAAAAAGATTA
TGAAACTTTATCAGTACCTTGGAAATTTCAAAAAAAACTTAAAGAAATACAAGGTTCTGG
TGTTGTAGATAATCCAGGCTCAACTCCAAACCCAAGCCCAAACCCAAGTCCAAACCCAGT
ACCTGGCAATACTTCAAATGCACCAACATCAACAGGTAGAGAATCACTTGAGACCCAAAG
AGATATCATACAAATGAAAAGTAAAATTGATCTTCTCAGTAATTCATTGTTACAACTAGT
TGAGCAAATGAAAGTTACCAAACCACCTACAAATAACTTTTCAAATTTATCACCAGCAAC
ACAAAATAAAATATTGAATCCATCACCTCAATCAAAGAGAATCCCAATCATTGATCCAA-
---------GGTTAATGTCAATCCACCTGAAAGCATTATACTTCCCCAAAAAGTTTATGA
TTAAAACACCTCTTAGTGAACCTATAGATGGTACTATTGAATTGATGTATGGTGGTAGAA
ATATGTTTACTGGCAGTGTTACACAAGGTGATGCTGATCTTCCTCTAAACCTCTTGGATG
GTACATTTGAGGTTATCATTAAACCCAATAAGAGTAATTTATTACCTTTAAAGTTTAAAA
TGATTATACATGACTCTGTAAGAACCACTTCAAGCCATCAAAATGTCGGTAGACCTAAAA
AGCCTAAAGAAATGGATTTCGTTTTAGCTTGGGGGGAATCACCACTGGATTTGGATTCTC
ATATGTGGTGTATTCATCCTAATGGTTCTATTAGTCATGTTTATTTCGGGGGTAGGAGTG
TAGATAAAATGTCCTTGGAAGCTGATACTCAAAATGGTTTTGGTCCCGAAACCATAAGTA
TTATACGTTTAGATGGTTGTAAATATGTTTATGCAGTTCATAATTTCTCAACTGAAGGAG
AAATAGCTCAATCAGGTGCCAAGCTTACAATTGCCCATGAAACCTCAACATTATTTGAAA
GATGTATCCCAAACACTCGACAAACTGGTGCAAGATTTTGGGTAGTATGTACTATTGATG
GAACATCTGGAGATATTGACTTCAAAGATCATTTTGAATTCCACAATTCACAAACAGATA
TTCCATTAAAATATAAATAAGTATAAAAAATTT
Length of connected seq. 1343
Full length Seq ID -
Full length Seq. -
Length of full length seq. -