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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM771
Library AF
(Link to library)
Clone ID AFM771
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM771P
(Link to Original site)
Representative DNA sequence 
>AFM771 (AFM771Q) /CSM/AF/AFM7-C/AFM771Q.Seq.d/
GAGGGCAACGGGATATCGGTTACTTCGTTTATCATTTCAAAAATATATAAATATTTTATT
TAAAAAAAAACTTTTTTTTTAAGAAATGGGTCCAAAAGGTAAAAAGAAAGGTCAATCATT
TGATGATTCAGATGAAGAAATTAATAATAAAAAAGGTGGAAATAAAAAAGGACAACAATT
AGAAGATGATATTCCTCAACCAGTTAAAAAGGGTGGAAATAAAAAAGGTCAAAGAGGTAA
ACAAGACTCTGATGATGAACCAGAAAATATTCCTCAACCAGTAGCAAAGAAGAGTAATAA
TAAAAAAGGTCAAAGAGGTAAACAAGATTCAGATGATGAACAAGATGAAATTCCTCAACC
ACAAAAGAAAGGTGGTAAACCAGCTCCACAACCACAAAAGAAAGGTGGTAAACAACAAGA
TTCAGATGATGAACAAGATGAAATTCCTCAACCAGTTAAAAAAGGTGGTAAACCAGCTCC
ACAAAAGAAAGGTGGTAAACAACAACAACAACAAGATTCAGATGATGAACAAGAAGAAAT
TCCTCAACCAGTCAAGAAAGGGTGGTAAACCAGCTCCACAAAAGAAAGGTGGTAAACAAC
AAGATTCAGATGATGAAGAAGATGAAATTCCTCAACCAGTTAAGAAAAGGTGGTAAACCA
GCTCCACAAAGNAAGGTGGAAAACAXXXXXXXXXXAAAATGATAAAAAAAAGGTGTTAAA
CATGTTGAAGAAGAGGAAGAAGGAAGAGGANGAAGAAGAAATTTGNCCACCCAGTTAAAA
AAGGTGGTTAAGCTCCAAAACCAAAAAAAGGTGGTAAGGGTAGTAAACAAGAATCTGAAG
ATGAAGAAGATGATGTTCACCAACCAGTAAAGAAAGGTGGTAAAAAAGATAAAAAGAAAG
GTAGTAAACATGTTGAAGAAGAGGAAGAAGAAGAAGAGGAAGAGGAAATTGAACAACCAG
TTAAAAAAGGTTCAAATAAAAAAGATCAAAAGAAAGGTGGTAAAGGTAAACATGTTGAAG
AAGAAGAGGAAGAAGAAGAAGAAGAGGAAATTGAACAACCAGTAAAAAAAGGTTCAAATA
AAAAAGATCAAAAGAAAGGTGGTAAAGGTAAACAACAACAAGAATCTGAAGATGAAGAAG
AGGAAATTCAACAACCAGTTAAAAAAGGTGGTAAAAAAGATAAAAAATCAAGTTTGGAAG
ATAGTATGTCAGAACTTTCAATTAAATCAAAGAAAGGTGGTAAGGGTAAACATGTTGAAG
AAGAAGAAGAACAAGAACAAGAAGAAGAAGAGGAAAAACCAAAATCAAAATCAAATAAAA
AAGATAAAAAGAAAGGTAAACATGTAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAG
AAAAACCAAAATCAAAATCAAATAAAAAAGATAAAAAGAAAGGTAGTAAACATATTGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAAAAA
AAATGACATTAGCAGAAATTAGAGCAGCAAAAAAAGTTAAAAAAGTT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
egngisvtsfiiskiykyfi*kktfflrngskr*kersii**fr*rn***krwk*krtti
rr*yssts*kgwk*krskr*trl***trkysstsskee***krskr*trfr**tr*nsst
tkerw*tsstttkerw*ttrfr**tr*nssts*krw*tsstkerw*tttttrfr**TRRN
SSTSQERVVNQLHKRKVVNNKIQMMKKMKFLNQLRKGGKPAPQXKVEN---

---NDKKKVLNMLKKRKKEEXEEEIXPPS*krwlssktkkrw*g**tri*r*rr*cspts
kerw*kr*ker**tc*rrgrrrrgrgn*tts*krfk*krskerw*r*tc*rrrgrrrrrg
n*ttskkrfk*krskerw*r*tttri*r*rrgnstts*krw*kr*kikfgr*yvrtfn*i
kerw*g*tc*rrrrtrtrrrrgktkikik*kr*ker*tcrrrgrrrrrrrrktkikik*k
r*ker**ty*rrrrrrrrrrrrrkrrrrrkkndisrn*sskks*ks
Translated Amino Acid sequence (All Frames) 
Frame A:
egngisvtsfiiskiykyfi*kktfflrngskr*kersii**fr*rn***krwk*krtti
rr*yssts*kgwk*krskr*trl***trkysstsskee***krskr*trfr**tr*nsst
tkerw*tsstttkerw*ttrfr**tr*nssts*krw*tsstkerw*tttttrfr**TRRN
SSTSQERVVNQLHKRKVVNNKIQMMKKMKFLNQLRKGGKPAPQXKVEN---

---kmikkrc*tc*rrgrrkrxkkkfxhpvkkgg*apkpkkggkgskqesedeeddvhqp
vkkggkkdkkkgskhveeeeeeeeeeeieqpvkkgsnkkdqkkggkgkhveeeeeeeeee
eieqpvkkgsnkkdqkkggkgkqqqesedeeeeiqqpvkkggkkdkkssledsmselsik
skkggkgkhveeeeeqeqeeeeekpksksnkkdkkkgkhveeeeeeeeeeeekpksksnk
kdkkkgskhieeeeeeeeeeeeeekeeeeekkmtlaeiraakkvkkv

Frame B:
ratgyrllrlsfqkyinilfkkklff*emgpkgkkkgqsfddsdeeinnkkggnkkgqql
eddipqpvkkggnkkgqrgkqdsddepenipqpvakksnnkkgqrgkqdsddeqdeipqp
qkkggkpapqpqkkggkqqdsddeqdeipqpvkkggkpapqkkggkqqqqqdsddeqeei
pqpvkkgw*tsstkerw*ttrfr**rr*nssts*ekvvnqlhkxrwkt---

---k**kkgvkhveeeeegrgxrrnlxtqlkkvvklqnqkkvvrvvnknlkmkkmmftnq
*rkvvkkikrkvvnmlkkrkkkkrkrklnnqlkkvqikkikrkvvkvnmlkkkrkkkkkr
klnnq*kkvqikkikrkvvkvnnnknlkmkkrkfnnqlkkvvkkiknqvwkivcqnfqln
qrkvvrvnmlkkkknknkkkkrknqnqnqikkikrkvnm*kkrkkkkkkkkknqnqnqik
kikrkvvnilkkkkkkkkkkkkkkkkkkkkkk*h*qkleqqkklkk

Frame C:
gqrdigyfvyhfkni*ifylkknfffkkwvqkvkrkvnhlmiqmkkliikkveikkdnn*
kmiflnqlkrveikkvkevnktlmmnqkiflnq*qrrviikkvkevnkiqmmnkmkflnh
krkvvnqlhnhkrkvvnnkiqmmnkmkflnqlkkvvnqlhkrkvvnnnnnkiqmmnkkkf
lnqsrkggkpapqkkggkqqdsddeedeipqpvkkrw*tsstkxggk---

---NDKKKVLNMLKKRKKEEXEEEIXPPS*krwlssktkkrw*g**tri*r*rr*cspts
kerw*kr*ker**tc*rrgrrrrgrgn*tts*krfk*krskerw*r*tc*rrrgrrrrrg
n*ttskkrfk*krskerw*r*tttri*r*rrgnstts*krw*kr*kikfgr*yvrtfn*i
kerw*g*tc*rrrrtrtrrrrgktkikik*kr*ker*tcrrrgrrrrrrrrktkikik*k
r*ker**ty*rrrrrrrrrrrrrkrrrrrkkndisrn*sskks*ks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA717 (SLA717Q) /CSM/SL/SLA7-A/SLA717Q.Seq.d/                        827   0.0
SHC375 (SHC375Q) /CSM/SH/SHC3-D/SHC375Q.Seq.d/                        827   0.0
CFE387 (CFE387Q) /CSM/CF/CFE3-D/CFE387Q.Seq.d/                        827   0.0
AHM477 (AHM477Q) /CSM/AH/AHM4-D/AHM477Q.Seq.d/                        827   0.0
AFM771 (AFM771Q) /CSM/AF/AFM7-C/AFM771Q.Seq.d/                        827   0.0
AHA469 (AHA469Q) /CSM/AH/AHA4-C/AHA469Q.Seq.d/                        821   0.0
CFG683 (CFG683Q) /CSM/CF/CFG6-D/CFG683Q.Seq.d/                        815   0.0
VHG833 (VHG833Q) /CSM/VH/VHG8-B/VHG833Q.Seq.d/                        813   0.0
SHH682 (SHH682Q) /CSM/SH/SHH6-D/SHH682Q.Seq.d/                        813   0.0
CHR213 (CHR213Q) /CSM/CH/CHR2-A/CHR213Q.Seq.d/                        807   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF479256) Dictyostelium discoideum non-transporter ABC prot...   650   0.0    15
(BJ329904) Dictyostelium discoideum cDNA clone:dda26n17, 5' ...   650   0.0    4
(BJ361119) Dictyostelium discoideum cDNA clone:ddc9n21, 5' e...   650   0.0    10
(BJ330457) Dictyostelium discoideum cDNA clone:dda31j18, 5' ...   644   0.0    9
(BJ421915) Dictyostelium discoideum cDNA clone:ddv44b10, 5' ...   422   0.0    10
(AU060252) Dictyostelium discoideum slug cDNA, clone SLA717.      650   0.0    7
(BJ370961) Dictyostelium discoideum cDNA clone:ddc56i04, 5' ...   389   0.0    10
(BJ336989) Dictyostelium discoideum cDNA clone:dda55j20, 5' ...   650   0.0    6
(BJ359453) Dictyostelium discoideum cDNA clone:ddc14e22, 5' ...   644   0.0    8
(BJ395678) Dictyostelium discoideum cDNA clone:dds39c22, 5' ...   626   0.0    7
dna update 2009. 4.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T6B4) RecName: Full=ABC transporter F family member 4;  &AF47...   164   2e-45
AE014186_397(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.63
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM771 is

5' end seq. ID AFM771F
5' end seq. 
>AFM771F.Seq
GAGGGCAACGGGATATCGGTTACTTCGTTTATCATTTCAAAAATATATAAATATTTTATT
TAAAAAAAAACTTTTTTTTTAAGAAATGGGTCCAAAAGGTAAAAAGAAAGGTCAATCATT
TGATGATTCAGATGAAGAAATTAATAATAAAAAAGGTGGAAATAAAAAAGGACAACAATT
AGAAGATGATATTCCTCAACCAGTTAAAAAGGGTGGAAATAAAAAAGGTCAAAGAGGTAA
ACAAGACTCTGATGATGAACCAGAAAATATTCCTCAACCAGTAGCAAAGAAGAGTAATAA
TAAAAAAGGTCAAAGAGGTAAACAAGATTCAGATGATGAACAAGATGAAATTCCTCAACC
ACAAAAGAAAGGTGGTAAACCAGCTCCACAACCACAAAAGAAAGGTGGTAAACAACAAGA
TTCAGATGATGAACAAGATGAAATTCCTCAACCAGTTAAAAAAGGTGGTAAACCAGCTCC
ACAAAAGAAAGGTGGTAAACAACAACAACAACAAGATTCAGATGATGAACAAGAAGAAAT
TCCTCAACCAGTCAAGAAAGGGTGGTAAACCAGCTCCACAAAAGAAAGGTGGTAAACAAC
AAGATTCAGATGATGAAGAAGATGAAATTCCTCAACCAGTTAAGAAAAGGTGGTAAACCA
GCTCCACAAAGNAAGGTGGAAAACAXXXXXXXXXX
Length of 5' end seq. 695
3' end seq. ID AFM771Z
3' end seq. 
>AFM771Z.Seq
XXXXXXXXXXAAAATGATAAAAAAAAGGTGTTAAACATGTTGAAGAAGAGGAAGAAGGAA
GAGGANGAAGAAGAAATTTGNCCACCCAGTTAAAAAAGGTGGTTAAGCTCCAAAACCAAA
AAAAGGTGGTAAGGGTAGTAAACAAGAATCTGAAGATGAAGAAGATGATGTTCACCAACC
AGTAAAGAAAGGTGGTAAAAAAGATAAAAAGAAAGGTAGTAAACATGTTGAAGAAGAGGA
AGAAGAAGAAGAGGAAGAGGAAATTGAACAACCAGTTAAAAAAGGTTCAAATAAAAAAGA
TCAAAAGAAAGGTGGTAAAGGTAAACATGTTGAAGAAGAAGAGGAAGAAGAAGAAGAAGA
GGAAATTGAACAACCAGTAAAAAAAGGTTCAAATAAAAAAGATCAAAAGAAAGGTGGTAA
AGGTAAACAACAACAAGAATCTGAAGATGAAGAAGAGGAAATTCAACAACCAGTTAAAAA
AGGTGGTAAAAAAGATAAAAAATCAAGTTTGGAAGATAGTATGTCAGAACTTTCAATTAA
ATCAAAGAAAGGTGGTAAGGGTAAACATGTTGAAGAAGAAGAAGAACAAGAACAAGAAGA
AGAAGAGGAAAAACCAAAATCAAAATCAAATAAAAAAGATAAAAAGAAAGGTAAACATGT
AGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAAACCAAAATCAAAATCAAATAA
AAAAGATAAAAAGAAAGGTAGTAAACATATTGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAAAAAAAATGACATTAGCAGAAATTAGAGC
AGCAAAAAAAGTTAAAAAAGTT
Length of 3' end seq. 862
Connected seq. ID AFM771P
Connected seq. 
>AFM771P.Seq
GAGGGCAACGGGATATCGGTTACTTCGTTTATCATTTCAAAAATATATAAATATTTTATT
TAAAAAAAAACTTTTTTTTTAAGAAATGGGTCCAAAAGGTAAAAAGAAAGGTCAATCATT
TGATGATTCAGATGAAGAAATTAATAATAAAAAAGGTGGAAATAAAAAAGGACAACAATT
AGAAGATGATATTCCTCAACCAGTTAAAAAGGGTGGAAATAAAAAAGGTCAAAGAGGTAA
ACAAGACTCTGATGATGAACCAGAAAATATTCCTCAACCAGTAGCAAAGAAGAGTAATAA
TAAAAAAGGTCAAAGAGGTAAACAAGATTCAGATGATGAACAAGATGAAATTCCTCAACC
ACAAAAGAAAGGTGGTAAACCAGCTCCACAACCACAAAAGAAAGGTGGTAAACAACAAGA
TTCAGATGATGAACAAGATGAAATTCCTCAACCAGTTAAAAAAGGTGGTAAACCAGCTCC
ACAAAAGAAAGGTGGTAAACAACAACAACAACAAGATTCAGATGATGAACAAGAAGAAAT
TCCTCAACCAGTCAAGAAAGGGTGGTAAACCAGCTCCACAAAAGAAAGGTGGTAAACAAC
AAGATTCAGATGATGAAGAAGATGAAATTCCTCAACCAGTTAAGAAAAGGTGGTAAACCA
GCTCCACAAAGNAAGGTGGAAAACA----------AAAATGATAAAAAAAAGGTGTTAAA
CATGTTGAAGAAGAGGAAGAAGGAAGAGGANGAAGAAGAAATTTGNCCACCCAGTTAAAA
AAGGTGGTTAAGCTCCAAAACCAAAAAAAGGTGGTAAGGGTAGTAAACAAGAATCTGAAG
ATGAAGAAGATGATGTTCACCAACCAGTAAAGAAAGGTGGTAAAAAAGATAAAAAGAAAG
GTAGTAAACATGTTGAAGAAGAGGAAGAAGAAGAAGAGGAAGAGGAAATTGAACAACCAG
TTAAAAAAGGTTCAAATAAAAAAGATCAAAAGAAAGGTGGTAAAGGTAAACATGTTGAAG
AAGAAGAGGAAGAAGAAGAAGAAGAGGAAATTGAACAACCAGTAAAAAAAGGTTCAAATA
AAAAAGATCAAAAGAAAGGTGGTAAAGGTAAACAACAACAAGAATCTGAAGATGAAGAAG
AGGAAATTCAACAACCAGTTAAAAAAGGTGGTAAAAAAGATAAAAAATCAAGTTTGGAAG
ATAGTATGTCAGAACTTTCAATTAAATCAAAGAAAGGTGGTAAGGGTAAACATGTTGAAG
AAGAAGAAGAACAAGAACAAGAAGAAGAAGAGGAAAAACCAAAATCAAAATCAAATAAAA
AAGATAAAAAGAAAGGTAAACATGTAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAG
AAAAACCAAAATCAAAATCAAATAAAAAAGATAAAAAGAAAGGTAGTAAACATATTGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAAAAA
AAATGACATTAGCAGAAATTAGAGCAGCAAAAAAAGTTAAAAAAGTT
Length of connected seq. 1537
Full length Seq ID -
Full length Seq. -
Length of full length seq. -