VFJ639
Library VF
(Link to library)
Clone ID VFJ639
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VFJ639P
(Link to Original site)
Representative DNA sequence
>VFJ639 (VFJ639Q) /CSM/VF/VFJ6-B/VFJ639Q.Seq.d/
AACACACCAAATATATATTTATATTTATATATTTATATATTTTTTTTTATTTTATTTTNA
CACCCTATTCTATATAAATTAATTTTTTTTTTTTTTANCNCCAATTTAAAAAAAAAAXXX
XXXXXXXTCTATGCTGACTCTTTAGCTCGTTACAGTAAATCACCATACATTTATCCATTA
TATGGTTTAGGTGAATTACCACAAGCATTTGCCCGTTTATCTGCTATCTATGGTGGTACA
TATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAA
GTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTC
CCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCA
ATTCCATCTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTT
AAACGTCAATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAG
GGTAAATACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTA
GCACCAGCTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTC
ATTGAACCAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCACATGATGCT
ACCTCTCACTTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACGGTA
AAGATTTAGTTCTCACTGTTCATCCAAATATTCTTAACAACAAGAAGAAGCNGAACCAAG
AACAAGAAGAACAA
sequence update 2001.11.22
Translated Amino Acid sequence
NTPNIYLYLYIYIFFFILFXHPILYKLIFFFFXXNLKKK---

---YADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIVFDEEKKIIK
VTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQV
KRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQEKFVYISDF
IEPIADGTADNVFISKSHDATSHFETTCEDVMDMYKRITVKI*fslfiqiflttrrsxtk
nkkn


Translated Amino Acid sequence (All Frames)
Frame A:
NTPNIYLYLYIYIFFFILFXHPILYKLIFFFFXXNLKKK---

---smltl*lvtvnhhtfihymv*vnyhkhlpvyllsmvvhiclinqlkilfsmkkrkll
klhlkvkl*hviklfvihhisqikfkrkvklfvqfvf*mvqfhllirnlnhskslshknk
lnvnqictlvlchplivsvqrvntlpsfqpllkpmnqrkn*hqltly*vqfkrnlsifli
slnqllmvlptmfssqnhmmlpltlkplvkmswictresr*rfsshcsskys*qqeeaep
rtrrt

Frame B:
thqiyiyiyifiyfflfyfxtlfyin*fffflxpi*kk---

---lc*lfsslq*itihlsiiwfr*ittsicpficylwwyiya**tn*kycfr*rkeny*
syi*r*ncnm**ncl*siifpk*ssker*nysfnlyfewsnsic**ei*itpnhyptkts
*tsiryvrwcyvirslclskg*ihchrfshc*nq*treristslrfirsnsreiclyf*f
h*tnc*wycrqcfhlkit*cylsl*nhl*rchgyvqenhgkdlvltvhpnilnnkkkxnq
eqeeq

Frame C:
htkyififiylyiffyfixtpysi*inffffxxqfkkk---

---YADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIVFDEEKKIIK
VTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQV
KRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQEKFVYISDF
IEPIADGTADNVFISKSHDATSHFETTCEDVMDMYKRITVKI*fslfiqiflttrrsxtk
nkkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFJ639 (VFJ639Q) /CSM/VF/VFJ6-B/VFJ639Q.Seq.d/ 1435 0.0
CFH888 (CFH888Q) /CSM/CF/CFH8-D/CFH888Q.Seq.d/ 1425 0.0
CFH515 (CFH515Q) /CSM/CF/CFH5-A/CFH515Q.Seq.d/ 1417 0.0
SFL120 (SFL120Q) /CSM/SF/SFL1-A/SFL120Q.Seq.d/ 1394 0.0
SFL479 (SFL479Q) /CSM/SF/SFL4-D/SFL479Q.Seq.d/ 1390 0.0
AFB514 (AFB514Q) /CSM/AF/AFB5-A/AFB514Q.Seq.d/ 1388 0.0
SFL394 (SFL394Q) /CSM/SF/SFL3-D/SFL394Q.Seq.d/ 1382 0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/ 1374 0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/ 1372 0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/ 1370 0.0

own update 2003. 6.19
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ005836|AJ005836.1 Cicer arietinum mRNA for GDP dissociation inhibitor (gdi). 38 1e-08 4
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 5e-08 2
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 5e-08 2
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 5e-08 2
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 5e-08 2
AL408803|AL408803.1 T3 end of clone AV0AA010G06 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 54 4e-07 2
BZ296562|BZ296562.1 CG2922.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG2922, DNA sequence. 66 9e-07 1
AW831512|AW831512.1 sm26g12.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-5087 5' similar to TR:O22402 O22402 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 44 5e-06 3
AJ618983|AJ618983.1 Medicago truncatula gdi gene for GDP dissociation inhibitor. 38 9e-06 3
AW306227|AW306227.1 se47g11.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-2109 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 54 1e-05 2
dna update 2004. 1.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ... 271 2e-71
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia... 270 4e-71
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 270 4e-71
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 270 4e-71
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA. 270 4e-71
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 269 8e-71
(Q8HXX7) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 269 1e-70
(P31150) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 269 1e-70
A54091(A54091;S35964;A37996)rab GDP dissociation inhibitor alpha... 269 1e-70
AB171705_1(AB171705|pid:none) Macaca fascicularis brain cDNA clo... 269 1e-70
protein update 2009. 6.22
PSORT

psg: 1.00 gvh: 0.48 alm: 0.30 top: 0.60 tms: 0.07 mit: 0.26 mip: 0.12
nuc: 0.06 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.02 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: vesicles of secretory system
8.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for VFJ639 is cyt

5' end seq. ID VFJ639F
5' end seq.
>VFJ639F.Seq
AACACACCAAATATATATTTATATTTATATATTTATATATTTTTTTTTATTTTATTTTNA
CACCCTATTCTATATAAATTAATTTTTTTTTTTTTTANCNCCAATTTAAAAAAAAAANNN
NNNNNNN
Length of 5' end seq. 127
3' end seq. ID VFJ639Z
3' end seq.
>VFJ639Z.Seq
NNNNNNNNNNTCTATGCTGACTCTTTAGCTCGTTACAGTAAATCACCATACATTTATCCA
TTATATGGTTTAGGTGAATTACCACAAGCATTTGCCCGTTTATCTGCTATCTATGGTGGT
ACATATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATT
AAAGTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATAT
TTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGT
CCAATTCCATCTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAA
GTTAAACGTCAATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCA
AAGGGTAAATACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAA
TTAGCACCAGCTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGAT
TTCATTGAACCAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCACATGAT
GCTACCTCTCACTTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACG
GTAAAGATTTAGTTCTCACTGTTCATCCAAATATTCTTAACAACAAGAAGAAGCNGAACC
AAGAACAAGAAGAACAA
Length of 3' end seq. 737
Connected seq. ID VFJ639P
Connected seq.
>VFJ639P.Seq
AACACACCAAATATATATTTATATTTATATATTTATATATTTTTTTTTATTTTATTTTNA
CACCCTATTCTATATAAATTAATTTTTTTTTTTTTTANCNCCAATTTAAAAAAAAAA---
-------TCTATGCTGACTCTTTAGCTCGTTACAGTAAATCACCATACATTTATCCATTA
TATGGTTTAGGTGAATTACCACAAGCATTTGCCCGTTTATCTGCTATCTATGGTGGTACA
TATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAA
GTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTC
CCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCA
ATTCCATCTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTT
AAACGTCAATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAG
GGTAAATACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTA
GCACCAGCTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTC
ATTGAACCAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCACATGATGCT
ACCTCTCACTTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACGGTA
AAGATTTAGTTCTCACTGTTCATCCAAATATTCTTAACAACAAGAAGAAGCNGAACCAAG
AACAAGAAGAACAA
Length of connected seq. 844
Full length Seq ID -
Full length Seq. -
Length of full length seq. -