>VFJ635 (VFJ635Q) /CSM/VF/VFJ6-B/VFJ635Q.Seq.d/
XXXXXXXXXXTAAAACTGATTGTGTAGCTATGGCTTCTAATTATATTCCAGCAATTATTA
AAATGTTGGAAAATGATAATTCACCAGGTCAAGTTTGTCAAAAACTTAATCTTTGTCCAG
CACCAACTCCAACTTCAACACCTTCAACAATCAAGATTGATGTGAATATTAATAAATGTG
AAATTTGTGAAACTGTAATTGGTTTTGCTGAAAAATATTTAGGTTCAGCATTAGATTCTC
AAACTGTAAAGACATTCCTCCAAAATGAATGTAACAAACTTCCAGGTGTTGTTGGTGATG
TTTGTAATGAAGTTGTAAATGAATATCTTGAATTTGCAGTCACTCAACTCGAAGCTAAAT
TTAACCCAACTGAAATTTGTCAATTATTTTCATTCTGTACTGCTGGATCTGAATCATCAG
ATGCATCTGAAATCAAAATTAATAACAACTCATATATTGATTGTCAAATTTGTGAAGTTT
TAGCAAATTTCGTAGTCTATGATAAGAATTATACAACTCATTTCGAAGATAAACTCAATA
AATTATGTAGTTGTTTATCTCGTAGTTTAATTGAACCATGTCTTAACTTTGTTTCACAAT
ATGGTTCTGATCTTGTACAAATCATCGTTCAAGGTGGT

---KTDCVAMASNYIPAIIKMLENDNSPGQVCQKLNLCPAPTPTSTPSTIKIDVNINKCE
ICETVIGFAEKYLGSALDSQTVKTFLQNECNKLPGVVGDVCNEVVNEYLEFAVTQLEAKF
NPTEICQLFSFCTAGSESSDASEIKINNNSYIDCQICEVLANFVVYDKNYTTHFEDKLNK
LCSCLSRSLIEPCLNFVSQYGSDLVQIIVQGG

Frame A:
---KTDCVAMASNYIPAIIKMLENDNSPGQVCQKLNLCPAPTPTSTPSTIKIDVNINKCE
ICETVIGFAEKYLGSALDSQTVKTFLQNECNKLPGVVGDVCNEVVNEYLEFAVTQLEAKF
NPTEICQLFSFCTAGSESSDASEIKINNNSYIDCQICEVLANFVVYDKNYTTHFEDKLNK
LCSCLSRSLIEPCLNFVSQYGSDLVQIIVQGG


Frame B:
---kliv*lwlliifqqllkcwkmiihqvkfvknlifvqhqlqlqhlqqsrlm*ilinvk
fvkl*lvllkni*vqh*ilkl*rhsskmnvtnfqvllvmfvmkl*mnilnlqslnsklnl
tqlkfvnyfhsvlldlnhqmhlksklitthilivkfvkf*qis*smiriiqliskinsin
yvvvylvv*lnhvltlfhnmvlilykssfkv


Frame C:
---n*lcsygf*lyssny*nvgk**ftrsslskt*slsstnsnfntfnnqd*cey**m*n
l*ncnwfc*kifrfsirfsnckdippk*m*qtsrccw*cl**sck*is*icshstrs*i*
pn*nlsiifilycwi*iirci*nqn**qliy*lsnl*sfskfrsl**elynsfrr*tq*i
m*lfis*fn*tms*lcftiwf*sctnhrsrw

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ635 (VFJ635Q) /CSM/VF/VFJ6-B/VFJ635Q.Seq.d/                       1245   0.0
VFB595 (VFB595Q) /CSM/VF/VFB5-D/VFB595Q.Seq.d/                       1237   0.0
VFB732 (VFB732Q) /CSM/VF/VFB7-B/VFB732Q.Seq.d/                       1176   0.0
VFM205 (VFM205Q) /CSM/VF/VFM2-A/VFM205Q.Seq.d/                       1164   0.0
VFG662 (VFG662Q) /CSM/VF/VFG6-C/VFG662Q.Seq.d/                       1148   0.0
VFD617 (VFD617Q) /CSM/VF/VFD6-A/VFD617Q.Seq.d/                       1146   0.0
VFA464 (VFA464Q) /CSM/VF/VFA4-C/VFA464Q.Seq.d/                       1114   0.0
VFH580 (VFH580Q) /CSM/VF/VFH5-D/VFH580Q.Seq.d/                       1096   0.0
VFH555 (VFH555Q) /CSM/VF/VFH5-C/VFH555Q.Seq.d/                       1082   0.0
VFI241 (VFI241Q) /CSM/VF/VFI2-B/VFI241Q.Seq.d/                       1057   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U66367|U66367.1 Dictyostelium discoideum SapA (sapA) mRNA, partial cds.  1237   0.0    1
AJ235272|AJ235272.1 Rickettsia prowazekii strain Madrid E, complete genome; segment 3/4.    40   0.007  9
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    36   0.011  10
AC010477|AC010477.8 Homo sapiens chromosome 5 clone CTD-2313D3, complete sequence.    42   0.011  7
AR300198|AR300198.1 Sequence 1 from patent US 6537773.             36   0.013  15
AC053535|AC053535.4 Homo sapiens chromosome 8 clone RP11-745D6, WORKING DRAFT SEQUENCE, 10 unordered pieces.    40   0.13   5
AC146199|AC146199.2 Pan troglodytes BAC clone RP43-25F11 from 7, complete sequence.    32   0.17   8
AL929495|AL929495.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-136M16.    34   0.20   8
AC018642|AC018642.7 Homo sapiens chromosome 7 clone RP11-329I5, complete sequence.    32   0.21   8
BX248585|BX248585.1 Blochmannia floridanus complete genome; segment 2/3.    32   0.23   11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m...   400   e-110
BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei...    75   1e-12
AF196308_1(AF196308|pid:none) Naegleria fowleri naegleriapore A ...    71   3e-11
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (...    71   3e-11
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m...    71   3e-11
(Q6IBQ6) RecName: Full=Proactivator polypeptide; Contains:   Rec...    71   3e-11
AY892719_1(AY892719|pid:none) Synthetic construct Homo sapiens c...    71   3e-11
DQ062781_1(DQ062781|pid:none) Drosophila simulans saposin-relate...    71   3e-11
CR456746_1(CR456746|pid:none) Homo sapiens full open reading fra...    70   7e-11
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com...    69   1e-10

 psg: 0.83  gvh: 0.40  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFJ635 is cyt

>VFJ635Z.Seq
NNNNNNNNNNTAAAACTGATTGTGTAGCTATGGCTTCTAATTATATTCCAGCAATTATTA
AAATGTTGGAAAATGATAATTCACCAGGTCAAGTTTGTCAAAAACTTAATCTTTGTCCAG
CACCAACTCCAACTTCAACACCTTCAACAATCAAGATTGATGTGAATATTAATAAATGTG
AAATTTGTGAAACTGTAATTGGTTTTGCTGAAAAATATTTAGGTTCAGCATTAGATTCTC
AAACTGTAAAGACATTCCTCCAAAATGAATGTAACAAACTTCCAGGTGTTGTTGGTGATG
TTTGTAATGAAGTTGTAAATGAATATCTTGAATTTGCAGTCACTCAACTCGAAGCTAAAT
TTAACCCAACTGAAATTTGTCAATTATTTTCATTCTGTACTGCTGGATCTGAATCATCAG
ATGCATCTGAAATCAAAATTAATAACAACTCATATATTGATTGTCAAATTTGTGAAGTTT
TAGCAAATTTCGTAGTCTATGATAAGAATTATACAACTCATTTCGAAGATAAACTCAATA
AATTATGTAGTTGTTTATCTCGTAGTTTAATTGAACCATGTCTTAACTTTGTTTCACAAT
ATGGTTCTGATCTTGTACAAATCATCGTTCAAGGTGGT